Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47405 * 2 1 4 4 H 1.09002 * 109.46820 * 56.92439 * 3 2 1 5 5 C 1.50695 * 109.47124 * 176.92536 * 3 2 1 6 6 H 1.08001 * 120.00191 * 95.23058 * 5 3 2 7 7 C 1.37873 * 120.00246 * 275.22636 * 5 3 2 8 8 N 1.31522 * 119.99769 * 355.48245 * 7 5 3 9 9 Si 1.86793 * 120.00560 * 175.21072 * 7 5 3 10 10 H 1.48497 * 109.47493 * 89.99729 * 9 7 5 11 11 H 1.48502 * 109.47623 * 210.00298 * 9 7 5 12 12 H 1.48504 * 109.46792 * 329.99760 * 9 7 5 13 13 N 1.46898 * 109.46653 * 296.92750 * 3 2 1 14 14 C 1.46852 * 111.00007 * 299.20450 * 13 3 2 15 15 C 1.53041 * 109.52416 * 174.16355 * 14 13 3 16 16 C 1.53121 * 109.27632 * 59.17785 * 15 14 13 17 17 C 1.50696 * 109.52163 * 182.44069 * 16 15 14 18 18 C 1.38265 * 119.94416 * 59.41508 * 17 16 15 19 19 C 1.38145 * 120.05264 * 179.72594 * 18 17 16 20 20 C 1.38737 * 119.94583 * 0.57015 * 19 18 17 21 21 O 1.35902 * 120.05540 * 179.68373 * 20 19 18 22 22 C 1.38725 * 119.88729 * 359.69844 * 20 19 18 23 23 C 1.38150 * 119.94580 * 0.02562 * 22 20 19 24 24 C 1.53114 * 109.16384 * 302.34921 * 16 15 14 25 25 C 1.46845 * 110.99871 * 174.99859 * 13 3 2 26 26 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47223 * 300.00234 * 1 2 3 28 28 H 1.09001 * 109.47426 * 59.99955 * 1 2 3 29 29 H 1.09005 * 109.47223 * 239.99766 * 2 1 3 30 30 H 1.09001 * 109.47426 * 120.00045 * 2 1 3 31 31 H 0.97001 * 119.99641 * 4.95179 * 8 7 5 32 32 H 1.08998 * 109.46323 * 294.18248 * 14 13 3 33 33 H 1.09000 * 109.45993 * 54.14931 * 14 13 3 34 34 H 1.08997 * 109.50056 * 299.24255 * 15 14 13 35 35 H 1.08993 * 109.50383 * 179.12228 * 15 14 13 36 36 H 1.09009 * 109.57143 * 62.28413 * 16 15 14 37 37 H 1.08001 * 119.97259 * 359.97258 * 18 17 16 38 38 H 1.07998 * 120.02628 * 180.24851 * 19 18 17 39 39 H 0.96696 * 113.99818 * 270.02024 * 21 20 19 40 40 H 1.08006 * 120.02959 * 179.97438 * 22 20 19 41 41 H 1.07997 * 119.97144 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.50138 * 297.70999 * 24 16 15 43 43 H 1.09003 * 109.50053 * 177.59453 * 24 16 15 44 44 H 1.08998 * 109.46328 * 305.85822 * 25 13 3 45 45 H 1.09003 * 109.46502 * 65.83355 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6324 1.9720 0.8612 5 6 3.5450 1.4431 0.0762 6 1 4.1315 1.5119 -0.8281 7 6 4.1734 1.3559 1.3003 8 7 3.4620 1.3618 2.4065 9 14 6.0345 1.2218 1.3876 10 1 6.6260 2.5819 1.4596 11 1 6.4191 0.4500 2.5966 12 1 6.5379 0.5265 0.1757 13 7 1.6119 2.1131 -1.2348 14 6 2.1590 1.4367 -2.4179 15 6 1.5778 2.0705 -3.6839 16 6 1.9344 3.5593 -3.7135 17 6 1.3141 4.2017 -4.9273 18 6 -0.0576 4.1732 -5.0982 19 6 -0.6291 4.7664 -6.2073 20 6 0.1756 5.3806 -7.1560 21 8 -0.3838 5.9592 -8.2511 22 6 1.5520 5.4030 -6.9850 23 6 2.1183 4.8134 -5.8713 24 6 1.3952 4.2305 -2.4474 25 6 1.9817 3.5342 -1.2173 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4931 1.3549 2.3601 32 1 3.2441 1.5394 -2.4257 33 1 1.8946 0.3798 -2.3866 34 1 0.4938 1.9559 -3.6834 35 1 1.9959 1.5786 -4.5620 36 1 3.0177 3.6745 -3.7537 37 1 -0.6831 3.6903 -4.3621 38 1 -1.7009 4.7473 -6.3383 39 1 -0.4789 5.3624 -9.0059 40 1 2.1806 5.8802 -7.7223 41 1 3.1898 4.8302 -5.7379 42 1 0.3084 4.1500 -2.4275 43 1 1.6830 5.2819 -2.4422 44 1 1.5886 4.0006 -0.3139 45 1 3.0676 3.6271 -1.2309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = -53.839123 kcal Electronic energy + Delta-G solvation = -23438.160694 eV Core-core repulsion = 20225.814666 eV Total energy + Delta-G solvation = -3212.346027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06032 -39.93367 -38.03607 -36.28859 -34.03639 -32.90857 -31.91448 -31.60448 -29.91554 -27.71442 -25.54006 -24.46237 -23.99508 -23.72734 -22.38782 -21.30911 -20.47111 -19.30768 -18.65588 -17.28938 -16.67531 -16.56456 -16.16461 -15.79561 -15.62699 -15.44800 -15.03918 -14.89888 -14.61226 -14.40136 -14.19246 -13.90729 -13.68016 -13.25380 -13.11052 -13.00184 -12.84412 -12.76069 -12.45918 -12.37914 -12.02404 -12.00020 -11.82863 -11.66905 -11.65122 -11.30487 -11.15187 -10.98494 -10.89208 -10.46797 -9.90131 -9.35165 -8.87768 -8.48781 -6.30638 0.30494 0.43812 1.48342 1.55752 1.72718 2.54117 2.70714 3.17630 3.34367 3.38315 3.74550 3.81087 4.03903 4.09758 4.13809 4.36591 4.40495 4.42668 4.48980 4.53873 4.60576 4.62138 4.70415 4.74190 4.86714 4.92067 4.97872 4.99317 5.07098 5.10516 5.13691 5.17618 5.22264 5.26877 5.39657 5.43546 5.45588 5.48339 5.50273 5.62219 5.77223 5.94118 5.99731 6.11479 6.57070 6.61394 6.64732 6.89147 7.50776 8.79510 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.003736 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.393070 B = 7493.812835 C = 8165.032064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 C 0.197 3.803 4 H 0.007 0.993 5 C -0.619 4.619 6 H 0.044 0.956 7 C -0.024 4.024 8 N -0.937 5.937 9 Si 1.105 2.895 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.521 5.521 14 C 0.061 3.939 15 C -0.094 4.094 16 C -0.041 4.041 17 C -0.083 4.083 18 C -0.100 4.100 19 C -0.149 4.149 20 C 0.090 3.910 21 O -0.511 6.511 22 C -0.149 4.149 23 C -0.108 4.108 24 C -0.093 4.093 25 C 0.070 3.930 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.012 0.988 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.409 0.591 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 4.832 -19.638 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.140 4.140 3 C 0.090 3.910 4 H 0.025 0.975 5 C -0.658 4.658 6 H 0.062 0.938 7 C -0.224 4.224 8 N -0.575 5.575 9 Si 0.929 3.071 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.245 5.245 14 C -0.067 4.067 15 C -0.131 4.131 16 C -0.060 4.060 17 C -0.083 4.083 18 C -0.118 4.118 19 C -0.168 4.168 20 C 0.046 3.954 21 O -0.324 6.324 22 C -0.168 4.168 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.267 0.733 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -5.754 5.234 -18.275 19.861 hybrid contribution -0.151 -0.344 -0.636 0.739 sum -5.905 4.890 -18.911 20.406 Atomic orbital electron populations 1.21603 0.95195 1.00490 1.01354 1.21532 0.95604 0.97771 0.99051 1.19273 0.92282 0.91271 0.88217 0.97548 1.22765 0.94001 1.54321 0.94750 0.93810 1.26948 1.10178 0.93008 0.92237 1.70878 1.07939 1.48745 1.29949 0.83069 0.70696 0.77354 0.75974 1.20481 1.21082 1.19944 1.62373 1.57895 1.01685 1.02543 1.21973 0.96084 0.98211 0.90479 1.21593 1.01613 0.93886 0.96043 1.20104 0.99233 0.94864 0.91752 1.19894 0.93988 0.98590 0.95789 1.21038 0.94406 0.98831 0.97515 1.21577 1.01003 0.98822 0.95351 1.18586 0.90908 0.96145 0.89758 1.84769 1.82897 1.41134 1.23623 1.21562 0.94467 1.01219 0.99525 1.21150 1.00444 0.97449 0.93563 1.21571 1.00938 0.98282 0.92258 1.21769 0.97024 0.89564 0.97562 0.92797 0.94745 0.91629 0.93118 0.95857 0.93019 0.96984 0.91613 0.90723 0.90868 0.91500 0.85025 0.84236 0.73258 0.84163 0.84862 0.90858 0.91394 0.93790 0.96933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.78 71.98 0.70 -4.04 16 2 C -0.10 -4.51 5.17 30.59 0.16 -4.35 16 3 C 0.20 9.63 1.49 44.17 0.07 9.70 16 4 H 0.01 0.37 6.62 -2.39 -0.02 0.35 16 5 C -0.62 -33.54 6.91 25.60 0.18 -33.37 16 6 H 0.04 2.40 6.07 -2.91 -0.02 2.38 16 7 C -0.02 -1.37 5.45 84.65 0.46 -0.91 16 8 N -0.94 -56.62 13.63 21.45 0.29 -56.33 16 9 Si 1.11 50.48 29.91 68.60 2.05 52.53 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 N -0.52 -21.23 4.01 -875.51 -3.51 -24.75 16 14 C 0.06 2.22 4.81 86.33 0.42 2.64 16 15 C -0.09 -2.60 5.22 30.65 0.16 -2.44 16 16 C -0.04 -1.09 2.43 -11.46 -0.03 -1.12 16 17 C -0.08 -1.90 4.79 -19.85 -0.10 -2.00 16 18 C -0.10 -2.14 8.66 22.25 0.19 -1.95 16 19 C -0.15 -2.92 9.99 22.37 0.22 -2.70 16 20 C 0.09 1.76 6.70 22.51 0.15 1.91 16 21 O -0.51 -8.43 13.50 -92.44 -1.25 -9.68 16 22 C -0.15 -2.88 9.99 22.37 0.22 -2.65 16 23 C -0.11 -2.27 9.66 22.26 0.22 -2.06 16 24 C -0.09 -2.75 5.23 30.64 0.16 -2.59 16 25 C 0.07 2.73 5.13 86.33 0.44 3.18 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 2.28 7.69 -2.39 -0.02 2.26 16 29 H 0.05 2.18 6.14 -2.38 -0.01 2.16 16 30 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.26 15.84 6.66 -92.71 -0.62 15.22 16 32 H 0.01 0.50 6.36 -2.39 -0.02 0.48 16 33 H 0.07 2.42 5.97 -2.39 -0.01 2.41 16 34 H 0.07 1.97 7.28 -2.39 -0.02 1.95 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.88 7.88 -2.38 -0.02 1.86 16 37 H 0.13 2.69 7.05 -2.91 -0.02 2.67 16 38 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.41 2.63 9.06 -74.06 -0.67 1.95 16 40 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.13 2.49 7.94 -2.91 -0.02 2.47 16 42 H 0.07 2.08 7.33 -2.39 -0.02 2.06 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 45 H 0.01 0.55 7.44 -2.39 -0.02 0.53 16 Total: -1.00 -64.71 348.18 1.67 -63.04 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.46 Total: 17.94 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.63 Total: -42.76 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -3.22 Total: -81.08 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.25 Total: -9.68 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -64.71 1.67 -63.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.205 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds