Wall clock time and date at job start Tue Mar 31 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47058 * 2 1 4 4 H 1.08998 * 109.47488 * 54.99757 * 3 2 1 5 5 C 1.50695 * 109.46887 * 175.00154 * 3 2 1 6 6 H 1.08007 * 120.00124 * 120.00064 * 5 3 2 7 7 C 1.37877 * 120.00073 * 299.99265 * 5 3 2 8 8 N 1.31514 * 119.99831 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00418 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47087 * 59.99806 * 9 7 5 11 11 H 1.48493 * 109.47354 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46888 * 300.00082 * 9 7 5 13 13 N 1.46902 * 109.46891 * 294.99467 * 3 2 1 14 14 C 1.46846 * 110.99947 * 175.00002 * 13 3 2 15 15 C 1.53041 * 109.52385 * 185.84037 * 14 13 3 16 16 C 1.53115 * 109.27724 * 300.82527 * 15 14 13 17 17 C 1.50707 * 109.52152 * 177.55991 * 16 15 14 18 18 C 1.38289 * 119.96926 * 300.02005 * 17 16 15 19 19 C 1.38241 * 120.11011 * 179.97438 * 18 17 16 20 20 C 1.38171 * 120.05827 * 359.76279 * 19 18 17 21 21 C 1.38709 * 119.93737 * 0.49143 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.76780 * 21 20 19 23 23 C 1.38116 * 119.97322 * 120.00034 * 17 16 15 24 24 C 1.53113 * 109.16481 * 57.65464 * 16 15 14 25 25 C 1.46845 * 111.00242 * 299.21459 * 13 3 2 26 26 H 1.08997 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47232 * 300.00896 * 1 2 3 28 28 H 1.09002 * 109.47022 * 60.00225 * 1 2 3 29 29 H 1.08994 * 109.47335 * 239.99397 * 2 1 3 30 30 H 1.09001 * 109.46983 * 119.99220 * 2 1 3 31 31 H 0.97000 * 120.00246 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46033 * 65.83055 * 14 13 3 33 33 H 1.08993 * 109.46365 * 305.85805 * 14 13 3 34 34 H 1.08995 * 109.50540 * 180.88376 * 15 14 13 35 35 H 1.08997 * 109.50155 * 60.76295 * 15 14 13 36 36 H 1.08998 * 109.52576 * 297.68014 * 16 15 14 37 37 H 1.08001 * 119.94341 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.97348 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.02965 * 180.25400 * 20 19 18 40 40 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 41 41 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 42 42 H 1.08997 * 109.50810 * 62.28331 * 24 16 15 43 43 H 1.09001 * 109.50999 * 182.40560 * 24 16 15 44 44 H 1.08997 * 109.46109 * 294.17420 * 25 13 3 45 45 H 1.09001 * 109.46467 * 54.14370 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2815 1.3820 11 1 6.3977 0.2168 2.6504 12 1 6.5974 0.1471 0.2350 13 7 1.6514 2.0992 -1.2553 14 6 2.0207 3.5204 -1.2420 15 6 1.4736 4.2028 -2.4978 16 6 2.0526 3.5174 -3.7385 17 6 1.4712 4.1461 -4.9787 18 6 0.1048 4.1211 -5.1902 19 6 -0.4317 4.6974 -6.3265 20 6 0.3961 5.3043 -7.2515 21 6 1.7674 5.3260 -7.0441 22 8 2.5842 5.9181 -7.9547 23 6 2.3034 4.7471 -5.9027 24 6 1.6948 2.0291 -3.7035 25 6 2.2355 1.4097 -2.4127 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8292 -0.0616 2.9496 32 1 3.1065 3.6134 -1.2220 33 1 1.5992 3.9969 -0.3569 34 1 1.7612 5.2542 -2.4953 35 1 0.3867 4.1223 -2.5115 36 1 3.1364 3.6324 -3.7458 37 1 -0.5443 3.6513 -4.4661 38 1 -1.4992 4.6769 -6.4894 39 1 -0.0239 5.7579 -8.1371 40 1 2.9012 5.3206 -8.6459 41 1 3.3705 4.7663 -5.7370 42 1 0.6114 1.9143 -3.7362 43 1 2.1405 1.5273 -4.5624 44 1 3.3203 1.5125 -2.3873 45 1 1.9701 0.3530 -2.3780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:51 Heat of formation + Delta-G solvation = -31.255529 kcal Electronic energy + Delta-G solvation = -23458.159310 eV Core-core repulsion = 20246.792581 eV Total energy + Delta-G solvation = -3211.366729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05514 -38.50450 -36.86480 -34.79090 -32.35891 -31.32059 -30.29255 -30.02577 -29.03324 -26.42366 -24.17449 -22.83890 -22.68155 -22.34298 -21.17516 -19.53529 -18.85993 -17.92277 -16.50932 -16.32234 -15.61215 -15.47798 -15.10927 -14.35397 -14.18027 -14.00843 -13.58405 -13.33957 -13.20743 -13.01951 -12.68508 -12.23603 -12.13855 -11.95852 -11.71124 -11.56403 -11.37714 -11.12875 -10.91034 -10.76416 -10.64437 -10.55910 -10.36072 -10.22302 -10.10003 -9.67352 -9.64110 -9.25249 -9.06374 -8.84691 -8.55315 -8.34732 -7.08483 -5.97746 -4.11537 1.20306 1.29599 3.27332 3.32849 3.35264 3.57404 4.09144 4.39506 4.74404 4.82737 5.04533 5.07409 5.24815 5.28314 5.31320 5.37052 5.49220 5.57730 5.85454 5.86467 5.96090 6.08622 6.15861 6.17959 6.31297 6.32727 6.37738 6.38396 6.42595 6.47794 6.58574 6.61961 6.67709 6.75360 6.79846 6.81356 6.95056 7.12147 7.21453 7.36402 7.51856 7.63240 7.77631 8.00669 8.18199 8.35991 8.49852 8.98921 9.55988 11.00884 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.003888 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.442946 B = 7199.865808 C = 8016.803591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.532 5.532 14 C 0.064 3.936 15 C -0.104 4.104 16 C -0.051 4.051 17 C -0.046 4.046 18 C -0.120 4.120 19 C -0.104 4.104 20 C -0.157 4.157 21 C 0.100 3.900 22 O -0.502 6.502 23 C -0.145 4.145 24 C -0.105 4.105 25 C 0.060 3.940 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.387 0.613 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 6.015 -15.878 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.142 4.142 16 C -0.069 4.069 17 C -0.046 4.046 18 C -0.138 4.138 19 C -0.122 4.122 20 C -0.176 4.176 21 C 0.056 3.944 22 O -0.312 6.312 23 C -0.164 4.164 24 C -0.143 4.143 25 C -0.068 4.068 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.140 6.393 -15.379 17.751 hybrid contribution 2.163 -0.332 -0.115 2.192 sum -3.977 6.061 -15.494 17.106 Atomic orbital electron populations 1.21706 0.98863 0.98354 1.00589 1.21632 0.92247 0.99276 1.01942 1.19258 0.92934 0.91111 0.85906 0.94425 1.21709 0.92952 1.38080 1.05416 0.92723 1.24899 0.97686 0.95072 0.95707 1.69860 1.34827 1.38277 1.09441 0.86769 0.86367 0.78194 0.77332 1.20400 1.21249 1.20389 1.62400 1.58138 1.01035 1.04109 1.21825 0.98382 0.90319 0.95941 1.21675 1.00804 0.98001 0.93758 1.20295 0.99713 0.95649 0.91255 1.19952 0.93342 0.95836 0.95503 1.21127 0.94904 1.00148 0.97646 1.21022 0.99596 0.97515 0.94057 1.21333 0.93036 1.02195 1.01011 1.18459 0.89093 0.96005 0.90802 1.84823 1.66341 1.39051 1.40984 1.21376 1.00460 0.99543 0.95003 1.21690 1.01412 0.93280 0.97899 1.21917 0.97183 0.98320 0.89424 0.95679 0.94240 0.93374 0.94826 0.89019 0.92865 0.94646 0.91755 0.92578 0.91531 0.90885 0.85414 0.85806 0.85919 0.75721 0.85657 0.91576 0.92690 0.94657 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.39 16 2 C -0.11 -2.61 5.06 -26.73 -0.14 -2.74 16 3 C 0.21 5.14 1.75 -68.86 -0.12 5.02 16 4 H 0.04 1.01 8.08 -51.93 -0.42 0.59 16 5 C -0.54 -14.20 7.19 -34.44 -0.25 -14.45 16 6 H 0.05 1.44 5.84 -52.48 -0.31 1.14 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.62 11.29 55.43 0.63 -23.99 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -10.74 4.10 -228.08 -0.93 -11.68 16 14 C 0.06 1.20 5.12 -3.83 -0.02 1.18 16 15 C -0.10 -1.58 5.23 -26.65 -0.14 -1.72 16 16 C -0.05 -0.72 2.43 -91.65 -0.22 -0.94 16 17 C -0.05 -0.59 4.79 -104.64 -0.50 -1.10 16 18 C -0.12 -1.43 8.66 -39.56 -0.34 -1.77 16 19 C -0.10 -1.09 10.04 -39.60 -0.40 -1.49 16 20 C -0.16 -1.68 9.99 -39.43 -0.39 -2.07 16 21 C 0.10 1.17 6.70 -39.22 -0.26 0.91 16 22 O -0.50 -5.20 13.50 -19.44 -0.26 -5.46 16 23 C -0.15 -1.81 9.61 -39.43 -0.38 -2.19 16 24 C -0.10 -1.57 5.22 -26.65 -0.14 -1.71 16 25 C 0.06 1.12 4.80 -3.83 -0.02 1.10 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.92 7.75 -51.93 -0.40 0.51 16 29 H 0.03 0.76 6.05 -51.93 -0.31 0.45 16 30 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.04 0.73 6.96 -51.93 -0.36 0.37 16 33 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.99 7.31 -51.93 -0.38 0.61 16 36 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 37 H 0.13 1.46 7.05 -52.49 -0.37 1.09 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.39 2.11 9.06 45.56 0.41 2.52 16 41 H 0.13 1.49 7.95 -52.48 -0.42 1.07 16 42 H 0.07 0.97 7.30 -51.93 -0.38 0.59 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.73 6.62 -51.93 -0.34 0.38 16 45 H 0.07 1.39 5.93 -51.93 -0.31 1.09 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -28.48 346.24 -9.82 -38.30 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.40 Total: 4.31 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -3.05 Total: -22.62 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.31 Total: -35.67 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.26 Total: -5.46 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.48 -9.82 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.044 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds