Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46682 * 2 1 4 4 H 1.08998 * 109.47025 * 181.84764 * 3 2 1 5 5 C 1.50704 * 109.47180 * 61.85484 * 3 2 1 6 6 H 1.08006 * 119.99398 * 240.00019 * 5 3 2 7 7 C 1.37870 * 120.00114 * 59.99544 * 5 3 2 8 8 N 1.31511 * 120.00419 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99812 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47325 * 59.99769 * 9 7 5 11 11 H 1.48497 * 109.46995 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46900 * 299.99596 * 9 7 5 13 13 N 1.46900 * 109.47410 * 301.84997 * 3 2 1 14 14 C 1.46845 * 110.99950 * 181.24393 * 13 3 2 15 15 C 1.53039 * 109.52052 * 185.84163 * 14 13 3 16 16 C 1.53124 * 109.27469 * 300.81913 * 15 14 13 17 17 C 1.50706 * 109.51767 * 177.56131 * 16 15 14 18 18 C 1.38286 * 119.97243 * 299.97393 * 17 16 15 19 19 C 1.38247 * 120.10967 * 179.97438 * 18 17 16 20 20 C 1.38162 * 120.05434 * 359.76935 * 19 18 17 21 21 C 1.38708 * 119.94643 * 0.53318 * 20 19 18 22 22 O 1.35902 * 120.06010 * 179.71666 * 21 20 19 23 23 C 1.38125 * 119.96894 * 120.00139 * 17 16 15 24 24 C 1.53118 * 109.16004 * 57.65787 * 16 15 14 25 25 C 1.46847 * 110.99918 * 305.45489 * 13 3 2 26 26 H 1.09000 * 109.47436 * 304.74143 * 1 2 3 27 27 H 1.08995 * 109.47399 * 64.75107 * 1 2 3 28 28 H 1.09008 * 109.46636 * 184.74866 * 1 2 3 29 29 H 1.08997 * 109.46925 * 239.99966 * 2 1 3 30 30 H 1.09004 * 109.47288 * 119.99948 * 2 1 3 31 31 H 0.97001 * 120.00245 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46501 * 65.82565 * 14 13 3 33 33 H 1.09005 * 109.46279 * 305.85578 * 14 13 3 34 34 H 1.08997 * 109.50071 * 180.88356 * 15 14 13 35 35 H 1.08994 * 109.53600 * 60.77961 * 15 14 13 36 36 H 1.09000 * 109.52443 * 297.68592 * 16 15 14 37 37 H 1.07999 * 119.94470 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.96864 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.02602 * 180.24976 * 20 19 18 40 40 H 0.96692 * 114.00369 * 269.73112 * 22 21 20 41 41 H 1.07994 * 120.02822 * 0.02562 * 23 17 16 42 42 H 1.09001 * 109.50586 * 62.28397 * 24 16 15 43 43 H 1.09002 * 109.50184 * 182.39959 * 24 16 15 44 44 H 1.08994 * 109.45993 * 294.17785 * 25 13 3 45 45 H 1.09003 * 109.46344 * 54.14285 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4428 -0.0331 5 6 1.5754 2.1395 1.2528 6 1 0.9518 3.0185 1.1821 7 6 1.9464 1.6551 2.4892 8 7 2.7061 0.5850 2.5753 9 14 1.3700 2.5187 4.0421 10 1 -0.1143 2.5179 4.0871 11 1 1.9022 1.8062 5.2313 12 1 1.8646 3.9190 4.0423 13 7 1.5141 2.1478 -1.1764 14 6 2.0075 3.5300 -1.2254 15 6 1.3280 4.2751 -2.3767 16 6 1.6342 3.5570 -3.6940 17 6 0.9187 4.2514 -4.8241 18 6 -0.4605 4.3506 -4.8112 19 6 -1.1197 4.9875 -5.8462 20 6 -0.4012 5.5308 -6.8938 21 6 0.9819 5.4272 -6.9121 22 8 1.6905 5.9557 -7.9443 23 6 1.6412 4.7878 -5.8720 24 6 1.1538 2.1062 -3.5990 25 6 1.8383 1.4241 -2.4124 26 1 -0.3634 0.5856 0.8444 27 1 -0.3634 0.4383 -0.9294 28 1 -0.3633 -1.0242 0.0851 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9668 0.2440 3.4451 32 1 3.0862 3.5253 -1.3823 33 1 1.7798 4.0306 -0.2843 34 1 1.7061 5.2963 -2.4225 35 1 0.2505 4.2928 -2.2137 36 1 2.7085 3.5747 -3.8775 37 1 -1.0236 3.9305 -3.9910 38 1 -2.1970 5.0640 -5.8336 39 1 -0.9164 6.0318 -7.7000 40 1 1.8359 5.3415 -8.6768 41 1 2.7182 4.7093 -5.8820 42 1 0.0735 2.0892 -3.4549 43 1 1.4073 1.5780 -4.5182 44 1 2.9177 1.4292 -2.5636 45 1 1.4877 0.3950 -2.3333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -27.995583 kcal Electronic energy + Delta-G solvation = -23421.988662 eV Core-core repulsion = 20210.763295 eV Total energy + Delta-G solvation = -3211.225367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08185 -38.53258 -36.88485 -34.86760 -32.46734 -31.19640 -30.38623 -29.96957 -28.95646 -26.36527 -24.27487 -23.11793 -22.72122 -22.19245 -21.23215 -19.55944 -18.77759 -17.93303 -16.51486 -16.09555 -15.74633 -15.57662 -15.09963 -14.27315 -14.17103 -14.09548 -13.57255 -13.49727 -13.30568 -13.10174 -12.58800 -12.22091 -12.13338 -11.98654 -11.81617 -11.65456 -11.44054 -11.04409 -10.88056 -10.72691 -10.68050 -10.43711 -10.39912 -10.18339 -10.01570 -9.77977 -9.55692 -9.31859 -8.89459 -8.76739 -8.56832 -8.36786 -7.09496 -5.98541 -4.02051 1.18452 1.27416 3.32814 3.37552 3.40268 3.55375 4.06723 4.42016 4.71150 4.80105 4.97004 5.05054 5.21427 5.29741 5.31684 5.33587 5.46423 5.52622 5.76587 5.83365 5.92793 5.96080 6.08394 6.13414 6.23574 6.28838 6.33440 6.39212 6.41042 6.50717 6.54256 6.59690 6.67016 6.71697 6.77119 6.83133 6.85791 7.13077 7.34780 7.44878 7.49757 7.68479 7.78525 7.85796 8.24607 8.37470 8.64464 9.03479 9.61934 11.07780 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.003516 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.938802 B = 7961.155801 C = 8197.272402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.005 1.005 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.065 3.935 15 C -0.105 4.105 16 C -0.051 4.051 17 C -0.047 4.047 18 C -0.120 4.120 19 C -0.103 4.103 20 C -0.157 4.157 21 C 0.100 3.900 22 O -0.502 6.502 23 C -0.146 4.146 24 C -0.102 4.102 25 C 0.050 3.950 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.092 0.908 31 H 0.260 0.740 32 H 0.017 0.983 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.387 0.613 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.017 0.983 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 5.412 -17.275 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.064 4.064 15 C -0.143 4.143 16 C -0.070 4.070 17 C -0.047 4.047 18 C -0.138 4.138 19 C -0.121 4.121 20 C -0.175 4.175 21 C 0.056 3.944 22 O -0.312 6.312 23 C -0.164 4.164 24 C -0.140 4.140 25 C -0.078 4.078 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.525 5.811 -16.725 18.275 hybrid contribution 0.702 0.006 0.426 0.821 sum -3.824 5.817 -16.299 17.724 Atomic orbital electron populations 1.21473 0.97280 0.97581 1.01467 1.21602 0.95153 0.98292 1.00097 1.19239 0.92412 0.90715 0.86490 0.98700 1.21025 1.30841 1.11853 0.89644 0.92053 1.24897 0.95238 0.95097 0.98904 1.69864 1.36438 1.22645 1.24344 0.86649 0.79090 0.79584 0.82611 1.20247 1.21467 1.20417 1.62032 1.59965 1.01172 1.02055 1.21927 0.95335 0.90906 0.98222 1.21690 1.01787 0.97746 0.93091 1.20312 0.98813 0.95236 0.92597 1.19924 0.93708 0.96169 0.94925 1.21147 0.94100 0.99685 0.98823 1.21032 0.99853 0.97475 0.93767 1.21339 0.93266 1.02477 1.00428 1.18451 0.89713 0.96486 0.89734 1.84821 1.75067 1.41722 1.29576 1.21357 1.00371 0.99615 0.95058 1.21633 1.01279 0.93552 0.97552 1.22086 0.96563 0.98583 0.90578 0.92177 0.94136 0.96638 0.96776 0.89004 0.93001 0.96525 0.89618 0.92493 0.91191 0.91045 0.85326 0.85752 0.85893 0.75735 0.85702 0.91153 0.92610 0.96487 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.43 37.16 0.35 -2.25 16 2 C -0.11 -2.65 4.95 -26.73 -0.13 -2.78 16 3 C 0.22 5.28 1.76 -68.86 -0.12 5.16 16 4 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 5 C -0.50 -13.02 6.61 -34.44 -0.23 -13.25 16 6 H 0.06 1.62 6.79 -52.48 -0.36 1.26 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.03 11.31 55.43 0.63 -24.40 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.53 -10.74 3.79 -228.08 -0.86 -11.60 16 14 C 0.06 1.22 5.26 -3.83 -0.02 1.20 16 15 C -0.11 -1.61 5.23 -26.65 -0.14 -1.75 16 16 C -0.05 -0.70 2.43 -91.64 -0.22 -0.93 16 17 C -0.05 -0.59 4.79 -104.64 -0.50 -1.09 16 18 C -0.12 -1.42 8.66 -39.56 -0.34 -1.76 16 19 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 20 C -0.16 -1.65 9.99 -39.44 -0.39 -2.05 16 21 C 0.10 1.14 6.71 -39.22 -0.26 0.88 16 22 O -0.50 -5.04 13.50 -19.43 -0.26 -5.30 16 23 C -0.15 -1.75 9.61 -39.43 -0.38 -2.13 16 24 C -0.10 -1.47 5.22 -26.65 -0.14 -1.61 16 25 C 0.05 0.89 4.87 -3.84 -0.02 0.87 16 26 H 0.06 1.42 7.12 -51.93 -0.37 1.05 16 27 H 0.04 0.82 7.28 -51.93 -0.38 0.44 16 28 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.01 0.30 6.31 -51.93 -0.33 -0.03 16 30 H 0.09 2.42 6.02 -51.93 -0.31 2.11 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 1.77 6.38 -51.93 -0.33 1.44 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.08 7.32 -51.93 -0.38 0.70 16 36 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 37 H 0.13 1.49 7.05 -52.49 -0.37 1.12 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.39 1.96 9.06 45.56 0.41 2.38 16 41 H 0.13 1.40 7.94 -52.49 -0.42 0.99 16 42 H 0.07 1.02 7.30 -51.93 -0.38 0.65 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 1.38 5.64 -51.93 -0.29 1.09 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -28.86 345.69 -9.78 -38.64 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.43 Total: 2.90 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.04 Total: -21.47 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.24 Total: -36.01 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.26 Total: -5.30 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.86 -9.78 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.642 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds