Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46682 * 2 1 4 4 H 1.08998 * 109.47025 * 181.84764 * 3 2 1 5 5 C 1.50704 * 109.47180 * 61.85484 * 3 2 1 6 6 H 1.08006 * 119.99398 * 240.00019 * 5 3 2 7 7 C 1.37870 * 120.00114 * 59.99544 * 5 3 2 8 8 N 1.31511 * 120.00419 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99812 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47325 * 59.99769 * 9 7 5 11 11 H 1.48497 * 109.46995 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46900 * 299.99596 * 9 7 5 13 13 N 1.46900 * 109.47410 * 301.84997 * 3 2 1 14 14 C 1.46845 * 110.99950 * 181.24393 * 13 3 2 15 15 C 1.53039 * 109.52052 * 185.84163 * 14 13 3 16 16 C 1.53124 * 109.27469 * 300.81913 * 15 14 13 17 17 C 1.50706 * 109.51767 * 177.56131 * 16 15 14 18 18 C 1.38286 * 119.97243 * 299.97393 * 17 16 15 19 19 C 1.38247 * 120.10967 * 179.97438 * 18 17 16 20 20 C 1.38162 * 120.05434 * 359.76935 * 19 18 17 21 21 C 1.38708 * 119.94643 * 0.53318 * 20 19 18 22 22 O 1.35902 * 120.06010 * 179.71666 * 21 20 19 23 23 C 1.38125 * 119.96894 * 120.00139 * 17 16 15 24 24 C 1.53118 * 109.16004 * 57.65787 * 16 15 14 25 25 C 1.46847 * 110.99918 * 305.45489 * 13 3 2 26 26 H 1.09000 * 109.47436 * 304.74143 * 1 2 3 27 27 H 1.08995 * 109.47399 * 64.75107 * 1 2 3 28 28 H 1.09008 * 109.46636 * 184.74866 * 1 2 3 29 29 H 1.08997 * 109.46925 * 239.99966 * 2 1 3 30 30 H 1.09004 * 109.47288 * 119.99948 * 2 1 3 31 31 H 0.97001 * 120.00245 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46501 * 65.82565 * 14 13 3 33 33 H 1.09005 * 109.46279 * 305.85578 * 14 13 3 34 34 H 1.08997 * 109.50071 * 180.88356 * 15 14 13 35 35 H 1.08994 * 109.53600 * 60.77961 * 15 14 13 36 36 H 1.09000 * 109.52443 * 297.68592 * 16 15 14 37 37 H 1.07999 * 119.94470 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.96864 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.02602 * 180.24976 * 20 19 18 40 40 H 0.96692 * 114.00369 * 269.73112 * 22 21 20 41 41 H 1.07994 * 120.02822 * 0.02562 * 23 17 16 42 42 H 1.09001 * 109.50586 * 62.28397 * 24 16 15 43 43 H 1.09002 * 109.50184 * 182.39959 * 24 16 15 44 44 H 1.08994 * 109.45993 * 294.17785 * 25 13 3 45 45 H 1.09003 * 109.46344 * 54.14285 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4428 -0.0331 5 6 1.5754 2.1395 1.2528 6 1 0.9518 3.0185 1.1821 7 6 1.9464 1.6551 2.4892 8 7 2.7061 0.5850 2.5753 9 14 1.3700 2.5187 4.0421 10 1 -0.1143 2.5179 4.0871 11 1 1.9022 1.8062 5.2313 12 1 1.8646 3.9190 4.0423 13 7 1.5141 2.1478 -1.1764 14 6 2.0075 3.5300 -1.2254 15 6 1.3280 4.2751 -2.3767 16 6 1.6342 3.5570 -3.6940 17 6 0.9187 4.2514 -4.8241 18 6 -0.4605 4.3506 -4.8112 19 6 -1.1197 4.9875 -5.8462 20 6 -0.4012 5.5308 -6.8938 21 6 0.9819 5.4272 -6.9121 22 8 1.6905 5.9557 -7.9443 23 6 1.6412 4.7878 -5.8720 24 6 1.1538 2.1062 -3.5990 25 6 1.8383 1.4241 -2.4124 26 1 -0.3634 0.5856 0.8444 27 1 -0.3634 0.4383 -0.9294 28 1 -0.3633 -1.0242 0.0851 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9668 0.2440 3.4451 32 1 3.0862 3.5253 -1.3823 33 1 1.7798 4.0306 -0.2843 34 1 1.7061 5.2963 -2.4225 35 1 0.2505 4.2928 -2.2137 36 1 2.7085 3.5747 -3.8775 37 1 -1.0236 3.9305 -3.9910 38 1 -2.1970 5.0640 -5.8336 39 1 -0.9164 6.0318 -7.7000 40 1 1.8359 5.3415 -8.6768 41 1 2.7182 4.7093 -5.8820 42 1 0.0735 2.0892 -3.4549 43 1 1.4073 1.5780 -4.5182 44 1 2.9177 1.4292 -2.5636 45 1 1.4877 0.3950 -2.3333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -44.712053 kcal Electronic energy + Delta-G solvation = -23422.713542 eV Core-core repulsion = 20210.763295 eV Total energy + Delta-G solvation = -3211.950248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04218 -39.83376 -37.91201 -36.32807 -34.12548 -32.82577 -31.67117 -31.08690 -30.08876 -28.18186 -25.85575 -24.61654 -23.69575 -23.54775 -22.37691 -21.05842 -20.31007 -18.81440 -18.09988 -17.38942 -17.17700 -16.62072 -16.21429 -15.84304 -15.67752 -15.29162 -15.10778 -14.77018 -14.58695 -14.38121 -14.06395 -13.76214 -13.56181 -13.17361 -13.03041 -12.90814 -12.74482 -12.65455 -12.55046 -12.38790 -12.11780 -11.98169 -11.82937 -11.57833 -11.49681 -11.39560 -11.29857 -10.85755 -10.69342 -10.41285 -9.73284 -9.44309 -8.83203 -8.05805 -6.15507 0.35540 0.43021 1.43534 1.44348 1.51560 2.44625 2.73593 3.21579 3.29668 3.40714 3.75218 3.87577 4.07346 4.13219 4.28752 4.36903 4.40971 4.46094 4.54832 4.60672 4.62867 4.73643 4.75616 4.84679 4.90631 4.93806 5.03757 5.06810 5.09567 5.12540 5.24858 5.26222 5.31160 5.40509 5.49118 5.50986 5.53877 5.58452 5.75898 5.77412 5.82376 5.93045 5.97372 6.36187 6.49173 6.83344 6.88916 6.98131 7.52222 8.99433 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.003516 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.938802 B = 7961.155801 C = 8197.272402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.223 3.777 4 H -0.049 1.049 5 C -0.501 4.501 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.526 5.526 14 C 0.065 3.935 15 C -0.094 4.094 16 C -0.043 4.043 17 C -0.055 4.055 18 C -0.130 4.130 19 C -0.101 4.101 20 C -0.158 4.158 21 C 0.097 3.903 22 O -0.512 6.512 23 C -0.157 4.157 24 C -0.092 4.092 25 C 0.049 3.951 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.259 0.741 32 H 0.004 0.996 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.409 0.591 41 H 0.127 0.873 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.008 0.992 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 6.314 -19.175 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.251 5.251 14 C -0.063 4.063 15 C -0.131 4.131 16 C -0.062 4.062 17 C -0.056 4.056 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.176 4.176 21 C 0.053 3.947 22 O -0.325 6.325 23 C -0.176 4.176 24 C -0.129 4.129 25 C -0.079 4.079 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.267 0.733 41 H 0.145 0.855 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.188 6.715 -18.657 20.772 hybrid contribution 1.263 -0.251 0.919 1.582 sum -4.925 6.464 -17.738 19.511 Atomic orbital electron populations 1.21321 0.95504 0.98540 1.01089 1.21470 0.96586 0.97377 0.99276 1.19030 0.89797 0.91791 0.87819 1.03155 1.21243 1.30381 1.11653 0.90703 0.92547 1.25610 0.95445 0.95731 1.01727 1.70006 1.37512 1.23860 1.24762 0.85722 0.78804 0.78607 0.79173 1.19606 1.21324 1.19965 1.62003 1.59429 1.01690 1.01974 1.21917 0.95068 0.90435 0.98906 1.21571 1.01334 0.97871 0.92370 1.20166 0.98929 0.94783 0.92308 1.19725 0.94031 0.97094 0.94711 1.21241 0.93820 1.00245 0.99468 1.21304 1.01112 0.96439 0.93006 1.21612 0.93058 1.02045 1.00902 1.18558 0.90209 0.96025 0.89891 1.84765 1.74945 1.42714 1.30089 1.21440 1.00627 1.00139 0.95361 1.21551 1.00976 0.93832 0.96569 1.22169 0.96500 0.98643 0.90574 0.94548 0.92694 0.94622 0.95258 0.92125 0.93183 0.97728 0.91950 0.91400 0.91002 0.91281 0.85280 0.83409 0.83967 0.73254 0.85523 0.90793 0.90537 0.97373 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.43 71.98 0.68 -3.88 16 2 C -0.11 -5.18 4.95 30.60 0.15 -5.03 16 3 C 0.22 11.19 1.76 44.17 0.08 11.27 16 4 H -0.05 -2.84 8.14 -2.39 -0.02 -2.86 16 5 C -0.50 -27.08 6.61 25.60 0.17 -26.91 16 6 H 0.06 3.05 6.79 -2.91 -0.02 3.03 16 7 C 0.01 0.72 5.30 84.65 0.45 1.17 16 8 N -0.92 -53.12 11.31 21.44 0.24 -52.88 16 9 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.53 -21.71 3.79 -875.52 -3.32 -25.02 16 14 C 0.07 2.52 5.26 86.33 0.45 2.97 16 15 C -0.09 -2.79 5.23 30.65 0.16 -2.63 16 16 C -0.04 -1.13 2.43 -11.46 -0.03 -1.16 16 17 C -0.06 -1.28 4.79 -19.88 -0.10 -1.38 16 18 C -0.13 -2.76 8.66 22.28 0.19 -2.56 16 19 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 20 C -0.16 -2.84 9.99 22.36 0.22 -2.61 16 21 C 0.10 1.97 6.71 22.51 0.15 2.12 16 22 O -0.51 -8.99 13.50 -92.44 -1.25 -10.23 16 23 C -0.16 -3.48 9.61 22.37 0.21 -3.26 16 24 C -0.09 -2.47 5.22 30.64 0.16 -2.31 16 25 C 0.05 1.72 4.87 86.32 0.42 2.14 16 26 H 0.04 1.70 7.12 -2.39 -0.02 1.68 16 27 H 0.05 2.14 7.28 -2.39 -0.02 2.13 16 28 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.03 1.27 6.31 -2.39 -0.02 1.26 16 30 H 0.06 3.29 6.02 -2.39 -0.01 3.27 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 2.67 6.38 -2.38 -0.02 2.66 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.13 7.32 -2.39 -0.02 2.11 16 36 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 37 H 0.13 2.69 7.05 -2.91 -0.02 2.67 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.41 3.07 9.06 -74.06 -0.67 2.39 16 41 H 0.13 2.66 7.94 -2.91 -0.02 2.64 16 42 H 0.07 1.98 7.30 -2.39 -0.02 1.96 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.07 2.61 5.64 -2.39 -0.01 2.59 16 Total: -1.00 -62.96 345.69 1.61 -61.34 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.31 Total: 14.69 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 3.60 Total: -33.65 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -3.07 Total: -77.90 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.25 Total: -10.23 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -62.96 1.61 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.631 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds