Wall clock time and date at job start Tue Mar 31 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47105 * 2 1 4 4 H 1.09010 * 109.47038 * 180.97628 * 3 2 1 5 5 C 1.50701 * 109.47209 * 300.97391 * 3 2 1 6 6 H 1.07999 * 120.00434 * 120.00024 * 5 3 2 7 7 C 1.37877 * 119.99696 * 300.00094 * 5 3 2 8 8 N 1.31517 * 119.99687 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00288 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47113 * 89.99766 * 9 7 5 11 11 H 1.48504 * 109.47013 * 209.99983 * 9 7 5 12 12 H 1.48501 * 109.46923 * 329.99877 * 9 7 5 13 13 N 1.46893 * 109.47403 * 60.97548 * 3 2 1 14 14 C 1.48725 * 111.01535 * 63.56535 * 13 3 2 15 15 C 1.54381 * 104.51777 * 158.96985 * 14 13 3 16 16 C 1.54266 * 105.14931 * 336.27006 * 15 14 13 17 17 H 1.08995 * 110.32392 * 118.84202 * 16 15 14 18 18 C 1.50699 * 110.32129 * 241.05378 * 16 15 14 19 19 C 1.38287 * 119.97435 * 58.27202 * 18 16 15 20 20 C 1.38243 * 120.11419 * 179.72236 * 19 18 16 21 21 C 1.38167 * 120.05270 * 0.55393 * 20 19 18 22 22 C 1.38709 * 119.94285 * 359.71712 * 21 20 19 23 23 O 1.35902 * 120.05489 * 179.97438 * 22 21 20 24 24 C 1.42901 * 117.00074 * 0.02617 * 23 22 21 25 25 C 1.38123 * 119.97143 * 238.54505 * 18 16 15 26 26 C 1.48558 * 111.00342 * 179.07573 * 13 3 2 27 27 H 1.09003 * 109.46964 * 65.58879 * 1 2 3 28 28 H 1.09008 * 109.47054 * 185.58910 * 1 2 3 29 29 H 1.08993 * 109.47155 * 305.58798 * 1 2 3 30 30 H 1.09006 * 109.47457 * 239.99664 * 2 1 3 31 31 H 1.09000 * 109.47359 * 120.00177 * 2 1 3 32 32 H 0.97002 * 119.99682 * 180.02562 * 8 7 5 33 33 H 1.08996 * 110.38872 * 40.24424 * 14 13 3 34 34 H 1.09001 * 110.50955 * 277.75211 * 14 13 3 35 35 H 1.08994 * 110.32460 * 217.32177 * 15 14 13 36 36 H 1.08998 * 110.32142 * 95.21124 * 15 14 13 37 37 H 1.08001 * 119.94296 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.97512 * 180.29330 * 20 19 18 39 39 H 1.08002 * 120.02899 * 179.70466 * 21 20 19 40 40 H 1.08996 * 109.46957 * 299.99884 * 24 23 22 41 41 H 1.08991 * 109.47135 * 60.00162 * 24 23 22 42 42 H 1.08997 * 109.47106 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.02802 * 0.02562 * 25 18 16 44 44 H 1.09001 * 110.41285 * 82.18232 * 26 13 3 45 45 H 1.08998 * 110.51147 * 319.78798 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0175 5 6 1.5180 2.1598 -1.2182 6 1 0.8988 3.0373 -1.1043 7 6 1.8310 1.6958 -2.4783 8 7 1.3751 2.3216 -3.5414 9 14 2.9025 0.1785 -2.6755 10 1 2.0438 -1.0324 -2.7137 11 1 3.6741 0.2784 -3.9404 12 1 3.8416 0.0834 -1.5291 13 7 1.5697 2.1281 1.2110 14 6 2.1353 1.4987 2.4340 15 6 2.0213 2.5907 3.5193 16 6 1.9741 3.9246 2.7458 17 1 1.0361 4.4435 2.9428 18 6 3.1446 4.7932 3.1285 19 6 4.4356 4.3303 2.9512 20 6 5.5115 5.1269 3.2959 21 6 5.2991 6.3837 3.8294 22 6 4.0051 6.8481 4.0134 23 8 3.7936 8.0836 4.5384 24 6 4.9503 8.8510 4.8779 25 6 2.9270 6.0488 3.6613 26 6 2.0649 3.5280 1.2565 27 1 -0.3633 0.4247 -0.9358 28 1 -0.3633 -1.0229 0.1001 29 1 -0.3633 0.5980 0.8357 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5950 1.9949 -4.4279 33 1 3.1793 1.2291 2.2742 34 1 1.5539 0.6208 2.7155 35 1 2.8910 2.5643 4.1758 36 1 1.1071 2.4558 4.0974 37 1 4.6036 3.3463 2.5389 38 1 6.5189 4.7650 3.1521 39 1 6.1400 7.0038 4.1030 40 1 5.5375 8.3131 5.6222 41 1 5.5546 9.0117 3.9852 42 1 4.6410 9.8133 5.2858 43 1 1.9186 6.4079 3.8041 44 1 1.4305 4.1756 0.6514 45 1 3.0977 3.5792 0.9118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:03 Heat of formation + Delta-G solvation = -5.026599 kcal Electronic energy + Delta-G solvation = -23412.410156 eV Core-core repulsion = 20202.180799 eV Total energy + Delta-G solvation = -3210.229357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29802 -38.89101 -37.18858 -34.67066 -32.07477 -31.31992 -30.40393 -29.32846 -27.75021 -27.24218 -26.35320 -23.32053 -22.58642 -22.02003 -21.45802 -19.71041 -19.09737 -17.53940 -16.56577 -16.26921 -15.92888 -15.84546 -15.45033 -15.14734 -14.34763 -14.13629 -13.59691 -13.46227 -13.23831 -12.93257 -12.80318 -12.66122 -12.42672 -12.09269 -11.99893 -11.80005 -11.53649 -11.26958 -11.04090 -10.95334 -10.78631 -10.65047 -10.53286 -10.43209 -10.19870 -10.03248 -9.93908 -9.30191 -8.94003 -8.71764 -8.51558 -8.17226 -7.47047 -6.04966 -4.02168 1.35528 1.48747 3.16283 3.27519 3.36575 3.38529 3.78263 4.41132 4.63399 4.74329 4.93205 4.94353 4.97402 5.06174 5.23022 5.23596 5.25071 5.30469 5.40091 5.43465 5.55364 5.63776 5.86587 5.99084 6.05336 6.08074 6.16478 6.19311 6.24844 6.29902 6.36670 6.42415 6.49168 6.53885 6.67220 6.72761 6.73734 6.83093 6.91236 7.08974 7.13110 7.35259 7.45708 7.55882 7.90797 7.98536 8.65530 9.02439 9.57558 11.07948 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.003946 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.253587 B = 7093.348500 C = 7520.389643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.176 3.824 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.490 5.490 14 C 0.027 3.973 15 C -0.112 4.112 16 C -0.061 4.061 17 H 0.085 0.915 18 C -0.023 4.023 19 C -0.147 4.147 20 C -0.080 4.080 21 C -0.218 4.218 22 C 0.124 3.876 23 O -0.320 6.320 24 C 0.029 3.971 25 C -0.148 4.148 26 C 0.061 3.939 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.084 0.916 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 6.417 17.082 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.068 3.932 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.214 5.214 14 C -0.101 4.101 15 C -0.150 4.150 16 C -0.080 4.080 17 H 0.104 0.896 18 C -0.023 4.023 19 C -0.166 4.166 20 C -0.098 4.098 21 C -0.237 4.237 22 C 0.079 3.921 23 O -0.233 6.233 24 C -0.066 4.066 25 C -0.167 4.167 26 C -0.067 4.067 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.102 0.898 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.296 6.485 16.888 19.154 hybrid contribution 1.914 -0.832 -0.363 2.119 sum 8.210 5.653 16.524 19.298 Atomic orbital electron populations 1.21477 0.95273 0.98095 1.03425 1.21820 0.97644 0.97918 0.98232 1.19906 0.92920 0.91120 0.89264 0.98482 1.20872 1.31768 1.13108 0.87790 0.90072 1.24880 0.95550 0.96614 0.95922 1.69881 1.45496 1.40392 0.97969 0.86961 0.81052 0.84111 0.76750 1.20422 1.22547 1.19564 1.65362 1.53553 1.01064 1.01449 1.23141 0.97617 0.97386 0.91988 1.22371 1.01665 0.93547 0.97404 1.21057 0.95356 0.94743 0.96885 0.89643 1.19740 0.94817 0.93124 0.94631 1.20966 0.91942 1.00766 1.02883 1.20889 0.98940 0.93276 0.96672 1.21140 0.95448 0.98761 1.08312 1.18981 0.93684 0.84715 0.94719 1.86060 1.33947 1.25909 1.77411 1.23009 0.88119 0.95406 1.00102 1.20326 0.97851 0.93936 1.04591 1.22955 0.99423 0.91913 0.92438 0.91605 0.96030 0.92186 0.93820 0.94865 0.92705 0.94921 0.90789 0.91782 0.91210 0.85919 0.86013 0.85910 0.92854 0.92723 0.88452 0.85260 0.89791 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.47 37.16 0.35 -2.27 16 2 C -0.12 -2.59 5.01 -26.73 -0.13 -2.73 16 3 C 0.18 4.10 1.12 -68.87 -0.08 4.02 16 4 H 0.00 -0.06 7.04 -51.92 -0.37 -0.42 16 5 C -0.50 -13.58 7.48 -34.44 -0.26 -13.84 16 6 H 0.08 2.43 7.26 -52.49 -0.38 2.05 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 9 Si 0.88 21.95 24.36 -169.99 -4.14 17.80 16 10 H -0.28 -6.77 6.88 56.52 0.39 -6.38 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 13 N -0.49 -9.84 4.37 -223.26 -0.98 -10.82 16 14 C 0.03 0.45 5.50 -2.09 -0.01 0.44 16 15 C -0.11 -1.56 6.41 -25.34 -0.16 -1.72 16 16 C -0.06 -0.92 3.28 -90.38 -0.30 -1.22 16 17 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 18 C -0.02 -0.32 4.74 -104.65 -0.50 -0.82 16 19 C -0.15 -2.05 8.10 -39.56 -0.32 -2.37 16 20 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 21 C -0.22 -2.58 9.04 -39.43 -0.36 -2.94 16 22 C 0.12 1.62 6.69 -39.22 -0.26 1.36 16 23 O -0.32 -3.85 10.50 -19.43 -0.20 -4.06 16 24 C 0.03 0.22 9.81 101.05 0.99 1.21 16 25 C -0.15 -2.04 9.62 -39.43 -0.38 -2.42 16 26 C 0.06 1.15 5.16 -2.18 -0.01 1.14 16 27 H 0.06 1.54 7.40 -51.93 -0.38 1.16 16 28 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.06 1.21 7.47 -51.93 -0.39 0.83 16 30 H 0.04 1.02 3.29 -51.93 -0.17 0.84 16 31 H 0.03 0.64 6.99 -51.93 -0.36 0.28 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.03 0.54 7.92 -51.93 -0.41 0.13 16 34 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 35 H 0.06 0.82 7.31 -51.93 -0.38 0.44 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.12 1.73 7.75 -52.49 -0.41 1.33 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 40 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 41 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.13 1.65 7.97 -52.49 -0.42 1.23 16 44 H 0.08 1.73 7.46 -51.93 -0.39 1.34 16 45 H 0.04 0.87 6.72 -51.93 -0.35 0.52 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -30.36 343.23 -8.51 -38.87 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.21 Total: 1.03 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.92 Total: -21.59 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.20 Total: -37.22 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.36 -8.51 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.839 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds