Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47105 * 2 1 4 4 H 1.09010 * 109.47038 * 180.97628 * 3 2 1 5 5 C 1.50701 * 109.47209 * 300.97391 * 3 2 1 6 6 H 1.07999 * 120.00434 * 120.00024 * 5 3 2 7 7 C 1.37877 * 119.99696 * 300.00094 * 5 3 2 8 8 N 1.31517 * 119.99687 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00288 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47113 * 89.99766 * 9 7 5 11 11 H 1.48504 * 109.47013 * 209.99983 * 9 7 5 12 12 H 1.48501 * 109.46923 * 329.99877 * 9 7 5 13 13 N 1.46893 * 109.47403 * 60.97548 * 3 2 1 14 14 C 1.48725 * 111.01535 * 63.56535 * 13 3 2 15 15 C 1.54381 * 104.51777 * 158.96985 * 14 13 3 16 16 C 1.54266 * 105.14931 * 336.27006 * 15 14 13 17 17 H 1.08995 * 110.32392 * 118.84202 * 16 15 14 18 18 C 1.50699 * 110.32129 * 241.05378 * 16 15 14 19 19 C 1.38287 * 119.97435 * 58.27202 * 18 16 15 20 20 C 1.38243 * 120.11419 * 179.72236 * 19 18 16 21 21 C 1.38167 * 120.05270 * 0.55393 * 20 19 18 22 22 C 1.38709 * 119.94285 * 359.71712 * 21 20 19 23 23 O 1.35902 * 120.05489 * 179.97438 * 22 21 20 24 24 C 1.42901 * 117.00074 * 0.02617 * 23 22 21 25 25 C 1.38123 * 119.97143 * 238.54505 * 18 16 15 26 26 C 1.48558 * 111.00342 * 179.07573 * 13 3 2 27 27 H 1.09003 * 109.46964 * 65.58879 * 1 2 3 28 28 H 1.09008 * 109.47054 * 185.58910 * 1 2 3 29 29 H 1.08993 * 109.47155 * 305.58798 * 1 2 3 30 30 H 1.09006 * 109.47457 * 239.99664 * 2 1 3 31 31 H 1.09000 * 109.47359 * 120.00177 * 2 1 3 32 32 H 0.97002 * 119.99682 * 180.02562 * 8 7 5 33 33 H 1.08996 * 110.38872 * 40.24424 * 14 13 3 34 34 H 1.09001 * 110.50955 * 277.75211 * 14 13 3 35 35 H 1.08994 * 110.32460 * 217.32177 * 15 14 13 36 36 H 1.08998 * 110.32142 * 95.21124 * 15 14 13 37 37 H 1.08001 * 119.94296 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.97512 * 180.29330 * 20 19 18 39 39 H 1.08002 * 120.02899 * 179.70466 * 21 20 19 40 40 H 1.08996 * 109.46957 * 299.99884 * 24 23 22 41 41 H 1.08991 * 109.47135 * 60.00162 * 24 23 22 42 42 H 1.08997 * 109.47106 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.02802 * 0.02562 * 25 18 16 44 44 H 1.09001 * 110.41285 * 82.18232 * 26 13 3 45 45 H 1.08998 * 110.51147 * 319.78798 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0175 5 6 1.5180 2.1598 -1.2182 6 1 0.8988 3.0373 -1.1043 7 6 1.8310 1.6958 -2.4783 8 7 1.3751 2.3216 -3.5414 9 14 2.9025 0.1785 -2.6755 10 1 2.0438 -1.0324 -2.7137 11 1 3.6741 0.2784 -3.9404 12 1 3.8416 0.0834 -1.5291 13 7 1.5697 2.1281 1.2110 14 6 2.1353 1.4987 2.4340 15 6 2.0213 2.5907 3.5193 16 6 1.9741 3.9246 2.7458 17 1 1.0361 4.4435 2.9428 18 6 3.1446 4.7932 3.1285 19 6 4.4356 4.3303 2.9512 20 6 5.5115 5.1269 3.2959 21 6 5.2991 6.3837 3.8294 22 6 4.0051 6.8481 4.0134 23 8 3.7936 8.0836 4.5384 24 6 4.9503 8.8510 4.8779 25 6 2.9270 6.0488 3.6613 26 6 2.0649 3.5280 1.2565 27 1 -0.3633 0.4247 -0.9358 28 1 -0.3633 -1.0229 0.1001 29 1 -0.3633 0.5980 0.8357 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5950 1.9949 -4.4279 33 1 3.1793 1.2291 2.2742 34 1 1.5539 0.6208 2.7155 35 1 2.8910 2.5643 4.1758 36 1 1.1071 2.4558 4.0974 37 1 4.6036 3.3463 2.5389 38 1 6.5189 4.7650 3.1521 39 1 6.1400 7.0038 4.1030 40 1 5.5375 8.3131 5.6222 41 1 5.5546 9.0117 3.9852 42 1 4.6410 9.8133 5.2858 43 1 1.9186 6.4079 3.8041 44 1 1.4305 4.1756 0.6514 45 1 3.0977 3.5792 0.9118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = -23.735610 kcal Electronic energy + Delta-G solvation = -23413.221440 eV Core-core repulsion = 20202.180799 eV Total energy + Delta-G solvation = -3211.040641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30892 -40.15500 -38.34622 -36.25520 -34.00050 -32.68581 -31.46751 -30.69899 -28.93000 -28.26957 -28.00710 -25.09734 -23.58912 -23.31340 -22.86280 -21.05278 -20.61833 -18.56969 -18.48639 -17.31660 -17.19462 -17.03451 -16.62229 -16.38790 -15.96474 -15.50525 -14.97513 -14.71903 -14.63949 -14.47818 -14.29840 -13.85098 -13.81295 -13.57371 -13.10035 -12.90502 -12.86640 -12.68955 -12.54100 -12.39130 -12.18095 -12.09925 -11.94183 -11.79245 -11.73546 -11.65424 -11.38327 -11.20679 -10.88584 -10.65194 -9.74944 -9.20191 -9.04741 -8.26042 -6.26697 0.35480 0.48715 1.28759 1.32497 1.41852 2.31853 2.36717 2.77066 3.08174 3.28933 3.75022 3.85694 3.94855 3.96376 4.16484 4.25784 4.33538 4.35647 4.40722 4.42519 4.43118 4.46093 4.56385 4.58242 4.65830 4.74021 4.81538 4.86243 4.95419 5.00682 5.05467 5.11499 5.15194 5.21524 5.28046 5.33056 5.34916 5.37670 5.48951 5.65674 5.72107 5.76751 5.82072 6.03696 6.23642 6.47316 6.66865 6.78103 7.36841 8.90737 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.003946 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.253587 B = 7093.348500 C = 7520.389643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.181 3.819 4 H -0.014 1.014 5 C -0.490 4.490 6 H 0.037 0.963 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.939 3.061 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.254 1.254 13 N -0.502 5.502 14 C 0.026 3.974 15 C -0.101 4.101 16 C -0.050 4.050 17 H 0.089 0.911 18 C -0.034 4.034 19 C -0.163 4.163 20 C -0.080 4.080 21 C -0.214 4.214 22 C 0.117 3.883 23 O -0.337 6.337 24 C 0.018 3.982 25 C -0.164 4.164 26 C 0.063 3.937 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.264 0.736 33 H 0.034 0.966 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.050 0.950 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 5.454 19.779 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 C 0.072 3.928 4 H 0.003 0.997 5 C -0.529 4.529 6 H 0.055 0.945 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.178 1.178 13 N -0.226 5.226 14 C -0.102 4.102 15 C -0.139 4.139 16 C -0.069 4.069 17 H 0.107 0.893 18 C -0.034 4.034 19 C -0.181 4.181 20 C -0.098 4.098 21 C -0.233 4.233 22 C 0.072 3.928 23 O -0.251 6.251 24 C -0.076 4.076 25 C -0.183 4.183 26 C -0.065 4.065 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.149 0.851 44 H 0.069 0.931 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.965 5.524 19.622 21.885 hybrid contribution 1.384 -0.353 -1.144 1.830 sum 9.349 5.171 18.478 21.344 Atomic orbital electron populations 1.21379 0.94727 0.99796 1.01599 1.21797 0.98127 0.96527 0.99248 1.19713 0.91892 0.92156 0.89007 0.99681 1.21047 1.30231 1.11767 0.89820 0.94460 1.25658 0.97092 0.99780 0.95564 1.70034 1.47747 1.42586 0.98557 0.85991 0.79653 0.80688 0.76947 1.19046 1.22817 1.17808 1.65263 1.54098 1.01544 1.01701 1.23249 0.97690 0.98480 0.90733 1.22335 1.03352 0.91478 0.96685 1.20907 0.96213 0.95844 0.93957 0.89251 1.19646 0.94656 0.93420 0.95725 1.21029 0.92368 1.01015 1.03684 1.21189 0.99616 0.93213 0.95783 1.21458 0.95854 0.98776 1.07192 1.19122 0.93957 0.85190 0.94525 1.86043 1.36265 1.25596 1.77202 1.23335 0.87362 0.95948 1.00927 1.20433 0.98541 0.94067 1.05219 1.22832 0.97486 0.91196 0.94991 0.95239 0.92918 0.91788 0.94890 0.91508 0.92739 0.94781 0.89327 0.90055 0.89510 0.86553 0.83617 0.83123 0.91452 0.91978 0.86366 0.85094 0.93094 0.95384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 9.47 71.98 0.68 -4.08 16 2 C -0.12 -4.99 5.01 30.59 0.15 -4.84 16 3 C 0.18 8.43 1.12 44.17 0.05 8.48 16 4 H -0.01 -0.69 7.04 -2.38 -0.02 -0.71 16 5 C -0.49 -27.89 7.48 25.60 0.19 -27.70 16 6 H 0.04 2.39 7.26 -2.91 -0.02 2.37 16 7 C 0.02 0.94 5.45 84.65 0.46 1.40 16 8 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 9 Si 0.94 45.50 24.36 68.60 1.67 47.17 16 10 H -0.26 -12.19 6.88 99.48 0.68 -11.51 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 12 H -0.25 -11.51 6.53 99.48 0.65 -10.86 16 13 N -0.50 -20.13 4.37 -860.28 -3.76 -23.89 16 14 C 0.03 0.81 5.50 86.42 0.48 1.29 16 15 C -0.10 -2.59 6.41 31.49 0.20 -2.38 16 16 C -0.05 -1.49 3.28 -10.64 -0.03 -1.52 16 17 H 0.09 2.55 7.93 -2.39 -0.02 2.54 16 18 C -0.03 -0.96 4.74 -19.88 -0.09 -1.05 16 19 C -0.16 -4.37 8.10 22.28 0.18 -4.19 16 20 C -0.08 -1.80 10.04 22.25 0.22 -1.58 16 21 C -0.21 -4.56 9.04 22.37 0.20 -4.36 16 22 C 0.12 2.90 6.69 22.51 0.15 3.05 16 23 O -0.34 -7.59 10.50 -92.44 -0.97 -8.56 16 24 C 0.02 0.24 9.81 113.37 1.11 1.35 16 25 C -0.16 -4.44 9.62 22.37 0.22 -4.22 16 26 C 0.06 2.47 5.16 86.45 0.45 2.92 16 27 H 0.03 1.37 7.40 -2.39 -0.02 1.36 16 28 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 2.50 7.47 -2.39 -0.02 2.48 16 30 H 0.03 1.45 3.29 -2.38 -0.01 1.45 16 31 H 0.07 2.36 6.99 -2.39 -0.02 2.34 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.03 1.06 7.92 -2.39 -0.02 1.04 16 34 H 0.09 2.50 7.68 -2.39 -0.02 2.48 16 35 H 0.08 1.85 7.31 -2.39 -0.02 1.84 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.12 3.21 7.75 -2.91 -0.02 3.19 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 40 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 41 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.13 3.35 7.97 -2.91 -0.02 3.33 16 44 H 0.05 2.27 7.46 -2.39 -0.02 2.25 16 45 H 0.03 1.16 6.72 -2.39 -0.02 1.15 16 Total: -1.00 -68.39 343.23 2.74 -65.65 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.88 Total: 16.55 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 4.62 Total: -37.44 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -3.46 Total: -83.38 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.97 Total: -8.56 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -68.39 2.74 -65.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.916 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds