Wall clock time and date at job start Tue Mar 31 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 H 1.09001 * 109.46909 * 55.46843 * 3 2 1 5 5 C 1.50695 * 109.47382 * 175.46884 * 3 2 1 6 6 H 1.08003 * 120.00165 * 119.99996 * 5 3 2 7 7 C 1.37877 * 120.00297 * 300.00379 * 5 3 2 8 8 N 1.31515 * 120.00110 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99670 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47346 * 90.00192 * 9 7 5 11 11 H 1.48500 * 109.47085 * 210.00109 * 9 7 5 12 12 H 1.48499 * 109.47437 * 330.00011 * 9 7 5 13 13 N 1.46902 * 109.47471 * 295.47205 * 3 2 1 14 14 C 1.47844 * 111.00263 * 178.20590 * 13 3 2 15 15 C 1.55119 * 104.90283 * 146.24181 * 14 13 3 16 16 C 1.55143 * 101.55758 * 323.15899 * 15 14 13 17 17 H 1.09003 * 110.70873 * 276.96554 * 16 15 14 18 18 C 1.50704 * 110.70380 * 153.91118 * 16 15 14 19 19 C 1.38291 * 119.96943 * 303.82466 * 18 16 15 20 20 C 1.38243 * 120.10815 * 180.02562 * 19 18 16 21 21 C 1.38163 * 120.05590 * 359.97438 * 20 19 18 22 22 C 1.38710 * 119.94632 * 359.97438 * 21 20 19 23 23 O 1.35901 * 120.05429 * 180.29875 * 22 21 20 24 24 C 1.42897 * 116.99933 * 359.72659 * 23 22 21 25 25 C 1.38117 * 119.97465 * 123.80945 * 18 16 15 26 26 C 1.47438 * 110.99849 * 299.05230 * 13 3 2 27 27 H 1.09002 * 109.47058 * 305.08195 * 1 2 3 28 28 H 1.09005 * 109.47425 * 65.08102 * 1 2 3 29 29 H 1.08996 * 109.47644 * 185.08192 * 1 2 3 30 30 H 1.08996 * 109.46932 * 240.00087 * 2 1 3 31 31 H 1.08995 * 109.47007 * 120.00222 * 2 1 3 32 32 H 0.97002 * 119.99326 * 179.97438 * 8 7 5 33 33 H 1.08995 * 110.37651 * 265.19037 * 14 13 3 34 34 H 1.08997 * 110.36997 * 27.54053 * 14 13 3 35 35 H 1.08996 * 111.14287 * 205.05403 * 15 14 13 36 36 H 1.08988 * 110.92507 * 81.16947 * 15 14 13 37 37 H 1.07998 * 119.94124 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.96590 * 180.02562 * 20 19 18 39 39 H 1.08004 * 120.02526 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.47578 * 300.00018 * 24 23 22 41 41 H 1.09002 * 109.47257 * 59.99977 * 24 23 22 42 42 H 1.09005 * 109.47001 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.02549 * 359.97108 * 25 18 16 44 44 H 1.09000 * 109.88805 * 117.33399 * 26 13 3 45 45 H 1.09000 * 109.89177 * 356.14645 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6119 1.9792 0.8466 5 6 3.5428 1.4439 0.1122 6 1 4.1421 1.8906 -0.6673 7 6 4.1527 0.8750 1.2101 8 7 5.4642 0.8758 1.3078 9 14 3.1161 0.1029 2.5587 10 1 2.8919 -1.3324 2.2504 11 1 3.8240 0.2252 3.8584 12 1 1.8085 0.8020 2.6396 13 7 1.6417 2.1027 -1.2504 14 6 2.0813 3.5142 -1.2676 15 6 2.4161 3.8097 -2.7531 16 6 3.0389 2.4626 -3.2052 17 1 4.0929 2.4141 -2.9315 18 6 2.8665 2.2675 -4.6896 19 6 1.6026 2.3083 -5.2495 20 6 1.4411 2.1291 -6.6107 21 6 2.5426 1.9094 -7.4153 22 6 3.8114 1.8691 -6.8563 23 8 4.8970 1.6591 -7.6465 24 6 4.6575 1.4818 -9.0440 25 6 3.9708 2.0484 -5.4897 26 6 2.2222 1.4159 -2.4187 27 1 -0.3633 0.5907 0.8410 28 1 -0.3634 0.4330 -0.9320 29 1 -0.3634 -1.0236 0.0910 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.8932 0.4759 2.0804 33 1 1.2790 4.1658 -0.9216 34 1 2.9693 3.6426 -0.6486 35 1 3.1378 4.6220 -2.8394 36 1 1.5116 4.0312 -3.3193 37 1 0.7404 2.4795 -4.6221 38 1 0.4531 2.1618 -7.0456 39 1 2.4159 1.7699 -8.4788 40 1 4.0132 0.6157 -9.1953 41 1 4.1709 2.3710 -9.4450 42 1 5.6057 1.3231 -9.5578 43 1 4.9577 2.0174 -5.0520 44 1 1.4263 1.0175 -3.0479 45 1 2.8753 0.6085 -2.0876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:05 Heat of formation + Delta-G solvation = -8.118212 kcal Electronic energy + Delta-G solvation = -23545.543311 eV Core-core repulsion = 20335.179891 eV Total energy + Delta-G solvation = -3210.363420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20329 -38.85479 -37.18841 -34.40809 -32.04086 -31.54782 -30.43250 -28.88225 -27.70204 -27.32862 -26.53364 -22.79196 -22.54954 -22.34720 -20.91010 -19.93815 -18.89908 -17.59169 -16.96338 -16.22351 -15.92159 -15.78037 -15.39452 -14.94547 -14.26164 -13.80184 -13.52546 -13.42692 -13.08130 -12.75295 -12.71006 -12.61297 -12.47220 -12.07409 -11.78015 -11.68422 -11.54287 -11.38103 -11.07523 -10.96009 -10.83300 -10.68012 -10.50492 -10.31014 -10.15545 -9.90339 -9.73100 -9.45791 -9.18099 -8.61729 -8.55788 -8.08296 -7.18213 -6.11463 -4.11467 1.43609 1.56201 3.23937 3.26496 3.37780 3.39874 3.86169 4.38279 4.78160 4.85164 4.98805 5.00197 5.03572 5.16999 5.21495 5.29625 5.34719 5.43534 5.48595 5.54820 5.65571 5.92513 6.00806 6.03195 6.09537 6.10388 6.20524 6.24814 6.34451 6.37808 6.54484 6.55211 6.64971 6.66417 6.71478 6.80792 6.82173 6.88608 6.94845 7.00963 7.10375 7.27803 7.43369 7.58183 8.07673 8.15513 8.45276 8.91403 9.52437 11.01123 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.004138 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.977564 B = 6764.470474 C = 7236.590952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.174 3.826 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.518 5.518 14 C 0.043 3.957 15 C -0.116 4.116 16 C -0.073 4.073 17 H 0.087 0.913 18 C -0.017 4.017 19 C -0.148 4.148 20 C -0.083 4.083 21 C -0.221 4.221 22 C 0.124 3.876 23 O -0.319 6.319 24 C 0.029 3.971 25 C -0.149 4.149 26 C 0.060 3.940 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.059 0.941 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 2.564 -16.333 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.066 3.934 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.241 5.241 14 C -0.085 4.085 15 C -0.154 4.154 16 C -0.092 4.092 17 H 0.105 0.895 18 C -0.017 4.017 19 C -0.166 4.166 20 C -0.101 4.101 21 C -0.239 4.239 22 C 0.079 3.921 23 O -0.233 6.233 24 C -0.066 4.066 25 C -0.168 4.168 26 C -0.068 4.068 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.957 2.473 -16.178 17.783 hybrid contribution 0.429 -0.592 0.586 0.937 sum -6.528 1.881 -15.592 17.008 Atomic orbital electron populations 1.21719 0.97386 0.99164 1.01658 1.21948 0.94067 0.99357 1.00640 1.19888 0.94476 0.90460 0.88612 0.94391 1.21664 0.90436 1.38765 1.07303 0.90381 1.24984 0.94688 0.95360 0.97850 1.69916 1.08566 1.45003 1.29998 0.86872 0.80675 0.79858 0.80941 1.20593 1.22680 1.18867 1.63876 1.55803 1.01427 1.03018 1.22993 0.99865 0.90567 0.95090 1.22798 0.99843 0.95809 0.96953 1.21500 1.01589 0.96799 0.89337 0.89515 1.19713 0.92159 0.94595 0.95267 1.20985 0.97303 1.03648 0.94703 1.20870 0.97840 0.97733 0.93627 1.21118 0.92281 1.10367 1.00161 1.18990 0.85771 0.96545 0.90806 1.86076 1.31253 1.86852 1.19114 1.23002 1.03173 1.00801 0.79619 1.20408 0.99936 1.06180 0.90240 1.22762 0.96071 0.96453 0.91510 0.93851 0.92191 0.94896 0.92302 0.93566 0.92698 0.91894 0.91419 0.91667 0.91381 0.85497 0.86135 0.86039 0.92827 0.92875 0.88499 0.85258 0.92242 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.73 37.16 0.36 -2.23 16 2 C -0.12 -2.64 4.74 -26.73 -0.13 -2.77 16 3 C 0.17 3.98 1.36 -68.87 -0.09 3.88 16 4 H 0.04 0.92 7.20 -51.93 -0.37 0.55 16 5 C -0.54 -14.44 6.80 -34.44 -0.23 -14.68 16 6 H 0.08 2.24 6.60 -52.48 -0.35 1.89 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 9 Si 0.89 21.76 24.41 -169.99 -4.15 17.61 16 10 H -0.28 -6.73 6.83 56.52 0.39 -6.35 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.52 -10.30 4.72 -224.55 -1.06 -11.36 16 14 C 0.04 0.79 6.38 -2.18 -0.01 0.78 16 15 C -0.12 -1.84 6.48 -24.48 -0.16 -1.99 16 16 C -0.07 -1.24 2.94 -89.95 -0.26 -1.50 16 17 H 0.09 1.64 7.68 -51.93 -0.40 1.24 16 18 C -0.02 -0.26 4.93 -104.64 -0.52 -0.77 16 19 C -0.15 -2.02 8.11 -39.56 -0.32 -2.34 16 20 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 21 C -0.22 -2.67 9.04 -39.43 -0.36 -3.02 16 22 C 0.12 1.73 6.69 -39.22 -0.26 1.47 16 23 O -0.32 -4.18 10.50 -19.43 -0.20 -4.39 16 24 C 0.03 0.25 9.81 101.05 0.99 1.24 16 25 C -0.15 -2.28 9.62 -39.44 -0.38 -2.66 16 26 C 0.06 1.13 4.85 -2.84 -0.01 1.12 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.26 6.44 -51.93 -0.33 0.92 16 31 H 0.05 1.06 3.22 -51.93 -0.17 0.90 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.44 6.45 -51.93 -0.33 1.11 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.98 6.92 -51.94 -0.36 0.62 16 37 H 0.13 1.66 7.30 -52.49 -0.38 1.28 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.15 6.30 -52.48 -0.33 0.82 16 40 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 1.99 7.98 -52.48 -0.42 1.57 16 44 H 0.06 1.04 6.94 -51.93 -0.36 0.68 16 45 H 0.07 1.58 5.65 -51.93 -0.29 1.29 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -29.62 339.98 -8.42 -38.04 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.03 Total: 3.96 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.88 Total: -22.90 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.29 Total: -37.44 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.20 Total: -4.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.15 Total: 17.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.62 -8.42 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.920 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds