Wall clock time and date at job start Tue Mar 31 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 H 1.09001 * 109.46909 * 55.46843 * 3 2 1 5 5 C 1.50695 * 109.47382 * 175.46884 * 3 2 1 6 6 H 1.08003 * 120.00165 * 119.99996 * 5 3 2 7 7 C 1.37877 * 120.00297 * 300.00379 * 5 3 2 8 8 N 1.31515 * 120.00110 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99670 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47346 * 90.00192 * 9 7 5 11 11 H 1.48500 * 109.47085 * 210.00109 * 9 7 5 12 12 H 1.48499 * 109.47437 * 330.00011 * 9 7 5 13 13 N 1.46902 * 109.47471 * 295.47205 * 3 2 1 14 14 C 1.47844 * 111.00263 * 178.20590 * 13 3 2 15 15 C 1.55119 * 104.90283 * 146.24181 * 14 13 3 16 16 C 1.55143 * 101.55758 * 323.15899 * 15 14 13 17 17 H 1.09003 * 110.70873 * 276.96554 * 16 15 14 18 18 C 1.50704 * 110.70380 * 153.91118 * 16 15 14 19 19 C 1.38291 * 119.96943 * 303.82466 * 18 16 15 20 20 C 1.38243 * 120.10815 * 180.02562 * 19 18 16 21 21 C 1.38163 * 120.05590 * 359.97438 * 20 19 18 22 22 C 1.38710 * 119.94632 * 359.97438 * 21 20 19 23 23 O 1.35901 * 120.05429 * 180.29875 * 22 21 20 24 24 C 1.42897 * 116.99933 * 359.72659 * 23 22 21 25 25 C 1.38117 * 119.97465 * 123.80945 * 18 16 15 26 26 C 1.47438 * 110.99849 * 299.05230 * 13 3 2 27 27 H 1.09002 * 109.47058 * 305.08195 * 1 2 3 28 28 H 1.09005 * 109.47425 * 65.08102 * 1 2 3 29 29 H 1.08996 * 109.47644 * 185.08192 * 1 2 3 30 30 H 1.08996 * 109.46932 * 240.00087 * 2 1 3 31 31 H 1.08995 * 109.47007 * 120.00222 * 2 1 3 32 32 H 0.97002 * 119.99326 * 179.97438 * 8 7 5 33 33 H 1.08995 * 110.37651 * 265.19037 * 14 13 3 34 34 H 1.08997 * 110.36997 * 27.54053 * 14 13 3 35 35 H 1.08996 * 111.14287 * 205.05403 * 15 14 13 36 36 H 1.08988 * 110.92507 * 81.16947 * 15 14 13 37 37 H 1.07998 * 119.94124 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.96590 * 180.02562 * 20 19 18 39 39 H 1.08004 * 120.02526 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.47578 * 300.00018 * 24 23 22 41 41 H 1.09002 * 109.47257 * 59.99977 * 24 23 22 42 42 H 1.09005 * 109.47001 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.02549 * 359.97108 * 25 18 16 44 44 H 1.09000 * 109.88805 * 117.33399 * 26 13 3 45 45 H 1.09000 * 109.89177 * 356.14645 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6119 1.9792 0.8466 5 6 3.5428 1.4439 0.1122 6 1 4.1421 1.8906 -0.6673 7 6 4.1527 0.8750 1.2101 8 7 5.4642 0.8758 1.3078 9 14 3.1161 0.1029 2.5587 10 1 2.8919 -1.3324 2.2504 11 1 3.8240 0.2252 3.8584 12 1 1.8085 0.8020 2.6396 13 7 1.6417 2.1027 -1.2504 14 6 2.0813 3.5142 -1.2676 15 6 2.4161 3.8097 -2.7531 16 6 3.0389 2.4626 -3.2052 17 1 4.0929 2.4141 -2.9315 18 6 2.8665 2.2675 -4.6896 19 6 1.6026 2.3083 -5.2495 20 6 1.4411 2.1291 -6.6107 21 6 2.5426 1.9094 -7.4153 22 6 3.8114 1.8691 -6.8563 23 8 4.8970 1.6591 -7.6465 24 6 4.6575 1.4818 -9.0440 25 6 3.9708 2.0484 -5.4897 26 6 2.2222 1.4159 -2.4187 27 1 -0.3633 0.5907 0.8410 28 1 -0.3634 0.4330 -0.9320 29 1 -0.3634 -1.0236 0.0910 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.8932 0.4759 2.0804 33 1 1.2790 4.1658 -0.9216 34 1 2.9693 3.6426 -0.6486 35 1 3.1378 4.6220 -2.8394 36 1 1.5116 4.0312 -3.3193 37 1 0.7404 2.4795 -4.6221 38 1 0.4531 2.1618 -7.0456 39 1 2.4159 1.7699 -8.4788 40 1 4.0132 0.6157 -9.1953 41 1 4.1709 2.3710 -9.4450 42 1 5.6057 1.3231 -9.5578 43 1 4.9577 2.0174 -5.0520 44 1 1.4263 1.0175 -3.0479 45 1 2.8753 0.6085 -2.0876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:04 Heat of formation + Delta-G solvation = -26.624955 kcal Electronic energy + Delta-G solvation = -23546.345823 eV Core-core repulsion = 20335.179891 eV Total energy + Delta-G solvation = -3211.165932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28741 -40.23654 -38.35949 -36.00363 -34.07806 -32.83762 -31.49722 -30.30735 -29.15492 -28.43858 -27.97147 -24.57762 -23.75713 -23.49440 -22.38108 -21.30905 -20.55188 -18.95981 -18.58350 -17.50797 -17.09235 -16.89309 -16.61818 -16.36694 -15.83502 -15.23031 -14.95531 -14.71761 -14.49766 -14.35157 -14.07637 -14.02802 -13.73890 -13.46042 -13.17733 -13.10064 -12.81086 -12.65274 -12.61905 -12.39140 -12.31522 -12.06231 -11.91767 -11.66291 -11.62693 -11.53237 -11.41352 -11.24692 -11.11410 -10.67388 -9.72790 -9.09986 -8.91782 -8.30421 -6.33117 0.38405 0.52652 1.29315 1.34669 1.44965 2.31066 2.38773 2.80854 3.05287 3.40152 3.71253 3.87519 3.95427 4.02632 4.18604 4.27967 4.35633 4.38060 4.40982 4.44682 4.46991 4.58253 4.61691 4.64208 4.67686 4.73640 4.89862 4.96366 4.98560 5.03942 5.09652 5.14187 5.18100 5.20855 5.32831 5.36051 5.39530 5.50525 5.52390 5.54524 5.61734 5.77296 5.88269 6.19515 6.40582 6.42380 6.50020 6.75710 7.34210 8.85819 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.004138 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.977564 B = 6764.470474 C = 7236.590952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.178 3.822 4 H 0.031 0.969 5 C -0.532 4.532 6 H 0.040 0.960 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.303 1.303 12 H -0.245 1.245 13 N -0.508 5.508 14 C 0.039 3.961 15 C -0.102 4.102 16 C -0.067 4.067 17 H 0.049 0.951 18 C -0.028 4.028 19 C -0.153 4.153 20 C -0.073 4.073 21 C -0.213 4.213 22 C 0.116 3.884 23 O -0.344 6.344 24 C 0.019 3.981 25 C -0.178 4.178 26 C 0.066 3.934 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.392 2.486 -18.448 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.070 3.930 4 H 0.049 0.951 5 C -0.571 4.571 6 H 0.058 0.942 7 C -0.183 4.183 8 N -0.589 5.589 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.231 1.231 12 H -0.168 1.168 13 N -0.231 5.231 14 C -0.089 4.089 15 C -0.140 4.140 16 C -0.087 4.087 17 H 0.067 0.933 18 C -0.029 4.029 19 C -0.171 4.171 20 C -0.091 4.091 21 C -0.232 4.232 22 C 0.071 3.929 23 O -0.258 6.258 24 C -0.075 4.075 25 C -0.196 4.196 26 C -0.062 4.062 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.607 2.401 -18.318 21.303 hybrid contribution 1.651 -0.527 1.061 2.032 sum -8.957 1.874 -17.256 19.532 Atomic orbital electron populations 1.21632 0.94109 1.00888 1.02364 1.21878 0.96935 0.97541 0.99764 1.19759 0.91486 0.91938 0.89866 0.95130 1.21937 0.92652 1.36814 1.05740 0.94169 1.25803 0.95629 0.96348 1.00497 1.70071 1.10564 1.47174 1.31060 0.85902 0.79694 0.79512 0.77604 1.19610 1.23093 1.16828 1.63945 1.55154 1.01891 1.02062 1.23046 0.99007 0.90310 0.96506 1.22750 1.00982 0.95201 0.95090 1.21288 0.99149 0.97141 0.91093 0.93285 1.19499 0.93274 0.96429 0.93702 1.21112 0.96357 1.03724 0.95878 1.21275 0.99433 0.95645 0.92737 1.21490 0.91193 1.08656 1.01842 1.19088 0.87018 0.96428 0.90340 1.86050 1.31631 1.86761 1.21370 1.23343 1.04907 1.02047 0.77226 1.20395 0.99280 1.08268 0.91695 1.22704 0.96166 0.95789 0.91537 0.93515 0.91182 0.92610 0.92820 0.94908 0.92822 0.89599 0.95259 0.91031 0.88643 0.84441 0.82508 0.82870 0.91574 0.91328 0.86686 0.87388 0.90026 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.73 71.98 0.70 -3.73 16 2 C -0.12 -5.20 4.74 30.59 0.15 -5.05 16 3 C 0.18 8.21 1.36 44.17 0.06 8.27 16 4 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 5 C -0.53 -29.74 6.80 25.60 0.17 -29.57 16 6 H 0.04 2.50 6.60 -2.91 -0.02 2.48 16 7 C 0.01 0.86 5.45 84.65 0.46 1.33 16 8 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.95 45.55 24.41 68.60 1.67 47.22 16 10 H -0.27 -12.51 6.83 99.48 0.68 -11.83 16 11 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.24 -10.91 6.53 99.48 0.65 -10.26 16 13 N -0.51 -20.04 4.72 -864.35 -4.08 -24.12 16 14 C 0.04 1.46 6.38 86.85 0.55 2.01 16 15 C -0.10 -3.20 6.48 32.05 0.21 -2.99 16 16 C -0.07 -2.38 2.94 -10.36 -0.03 -2.41 16 17 H 0.05 2.06 7.68 -2.39 -0.02 2.04 16 18 C -0.03 -0.87 4.93 -19.88 -0.10 -0.97 16 19 C -0.15 -3.77 8.11 22.28 0.18 -3.59 16 20 C -0.07 -1.46 10.04 22.25 0.22 -1.24 16 21 C -0.21 -4.45 9.04 22.36 0.20 -4.25 16 22 C 0.12 3.15 6.69 22.50 0.15 3.30 16 23 O -0.34 -8.78 10.50 -92.44 -0.97 -9.75 16 24 C 0.02 0.27 9.81 113.37 1.11 1.38 16 25 C -0.18 -5.65 9.62 22.36 0.22 -5.43 16 26 C 0.07 2.52 4.85 86.65 0.42 2.95 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.07 2.19 7.88 -2.38 -0.02 2.17 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 2.29 6.44 -2.39 -0.02 2.27 16 31 H 0.03 1.47 3.22 -2.39 -0.01 1.46 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.03 1.31 6.45 -2.39 -0.02 1.29 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 2.50 6.92 -2.39 -0.02 2.49 16 37 H 0.14 3.08 7.30 -2.91 -0.02 3.06 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 40 H 0.07 0.78 7.67 -2.38 -0.02 0.76 16 41 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 42 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.11 3.73 7.98 -2.91 -0.02 3.70 16 44 H 0.08 2.76 6.94 -2.39 -0.02 2.74 16 45 H 0.04 1.63 5.65 -2.39 -0.01 1.61 16 Total: -1.00 -68.13 339.98 2.49 -65.65 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.89 Total: 20.46 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 4.68 Total: -39.99 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.78 Total: -83.59 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.97 Total: -9.75 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.22 kcal Total: -68.13 2.49 -65.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.020 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds