Wall clock time and date at job start Tue Mar 31 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47558 * 2 1 4 4 H 1.08998 * 109.47324 * 305.25005 * 3 2 1 5 5 C 1.50702 * 109.47179 * 185.24925 * 3 2 1 6 6 H 1.08002 * 120.00278 * 245.00954 * 5 3 2 7 7 C 1.37883 * 119.99672 * 65.28721 * 5 3 2 8 8 N 1.31511 * 119.99959 * 6.50702 * 7 5 3 9 9 Si 1.86797 * 119.99788 * 186.50568 * 7 5 3 10 10 H 1.48504 * 109.47371 * 94.01288 * 9 7 5 11 11 H 1.48502 * 109.47142 * 214.01362 * 9 7 5 12 12 H 1.48504 * 109.47284 * 334.01072 * 9 7 5 13 13 N 1.46905 * 109.46939 * 65.25103 * 3 2 1 14 14 C 1.47446 * 110.99847 * 69.87509 * 13 3 2 15 15 C 1.54319 * 107.23388 * 123.25430 * 14 13 3 16 16 C 1.55141 * 103.01578 * 22.28563 * 15 14 13 17 17 H 1.09002 * 110.99262 * 82.43860 * 16 15 14 18 18 C 1.50702 * 110.98878 * 206.21593 * 16 15 14 19 19 C 1.38288 * 119.97442 * 58.26797 * 18 16 15 20 20 C 1.38243 * 120.11311 * 179.72907 * 19 18 16 21 21 C 1.38166 * 120.05494 * 0.54407 * 20 19 18 22 22 C 1.38712 * 119.94392 * 359.73405 * 21 20 19 23 23 O 1.35896 * 120.05800 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99938 * 0.02562 * 23 22 21 25 25 C 1.38122 * 119.97129 * 238.54778 * 18 16 15 26 26 C 1.47842 * 110.99849 * 190.71568 * 13 3 2 27 27 H 1.08998 * 109.46828 * 300.00038 * 1 2 3 28 28 H 1.08997 * 109.46866 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.47932 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46931 * 240.00016 * 2 1 3 31 31 H 1.09000 * 109.47000 * 120.01172 * 2 1 3 32 32 H 0.97001 * 119.99898 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.88589 * 242.66228 * 14 13 3 34 34 H 1.09000 * 109.88703 * 3.84951 * 14 13 3 35 35 H 1.09004 * 110.70224 * 140.66335 * 15 14 13 36 36 H 1.08997 * 110.70770 * 263.72233 * 15 14 13 37 37 H 1.08000 * 119.94131 * 359.97438 * 19 18 16 38 38 H 1.08003 * 119.97336 * 180.25814 * 20 19 18 39 39 H 1.07997 * 120.02748 * 179.70322 * 21 20 19 40 40 H 1.09001 * 109.46966 * 299.99615 * 24 23 22 41 41 H 1.08998 * 109.47075 * 59.99712 * 24 23 22 42 42 H 1.09000 * 109.46926 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.03062 * 0.02562 * 25 18 16 44 44 H 1.09000 * 110.37680 * 332.46187 * 26 13 3 45 45 H 1.09000 * 110.37361 * 94.80982 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6021 1.9827 -0.8392 5 6 3.5415 1.4443 -0.1300 6 1 4.1532 1.8140 0.6797 7 6 4.1340 0.9792 -1.2849 8 7 3.3910 0.6543 -2.3203 9 14 5.9920 0.8107 -1.3788 10 1 6.3823 -0.5757 -1.0171 11 1 6.4468 1.1084 -2.7608 12 1 6.6241 1.7656 -0.4333 13 7 1.6566 2.0973 1.2578 14 6 2.4142 1.5426 2.3947 15 6 3.1429 2.7197 3.0765 16 6 2.3076 3.9504 2.6353 17 1 1.4283 4.0726 3.2678 18 6 3.1479 5.2014 2.6362 19 6 4.2893 5.2677 1.8584 20 6 5.0591 6.4159 1.8528 21 6 4.6958 7.4964 2.6334 22 6 3.5544 7.4305 3.4189 23 8 3.1951 8.4917 4.1880 24 6 4.0390 9.6440 4.1386 25 6 2.7804 6.2788 3.4185 26 6 1.9034 3.5536 1.1935 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 3.8079 0.3275 -3.1329 33 1 1.7308 1.0705 3.1006 34 1 3.1413 0.8143 2.0356 35 1 3.1231 2.6091 4.1607 36 1 4.1689 2.7979 2.7172 37 1 4.5776 4.4223 1.2512 38 1 5.9479 6.4667 1.2412 39 1 5.3001 8.3915 2.6323 40 1 5.0433 9.3730 4.4642 41 1 4.0779 10.0223 3.1171 42 1 3.6397 10.4152 4.7972 43 1 1.8915 6.2249 4.0296 44 1 2.7146 3.7708 0.4987 45 1 0.9962 4.0793 0.8955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:07 Heat of formation + Delta-G solvation = -17.647954 kcal Electronic energy + Delta-G solvation = -23545.742984 eV Core-core repulsion = 20334.966323 eV Total energy + Delta-G solvation = -3210.776660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17381 -38.75434 -37.08940 -34.23176 -31.95451 -31.18549 -30.30342 -28.96461 -27.64286 -27.26892 -26.03540 -23.12777 -22.47712 -21.98295 -21.03014 -19.73834 -18.78475 -17.49731 -16.59188 -16.18120 -15.81015 -15.78531 -15.34421 -14.72474 -14.21955 -13.72087 -13.58233 -13.13287 -12.99777 -12.74532 -12.67215 -12.55501 -12.31687 -11.94747 -11.61953 -11.47531 -11.32291 -11.24911 -10.96587 -10.84431 -10.63514 -10.60047 -10.51433 -10.33082 -10.03672 -9.95979 -9.61373 -9.49582 -9.04882 -8.59922 -8.36007 -8.05567 -7.11039 -6.01562 -4.10577 1.45992 1.60620 3.22849 3.25169 3.33463 3.34772 3.89676 4.38879 4.78838 4.85570 4.98514 5.03531 5.12425 5.25390 5.26385 5.31132 5.35013 5.53066 5.56760 5.61049 5.73136 5.85754 6.07733 6.16601 6.22198 6.34771 6.37179 6.39859 6.46663 6.59737 6.64783 6.66818 6.74407 6.80061 6.88812 6.90734 7.02549 7.10108 7.17585 7.35863 7.44146 7.61740 7.72079 7.93430 8.15403 8.29402 8.46500 9.00388 9.55423 11.00966 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.004591 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.758078 B = 6097.713498 C = 7159.901436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.207 3.793 4 H 0.042 0.958 5 C -0.542 4.542 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.527 5.527 14 C 0.046 3.954 15 C -0.126 4.126 16 C -0.063 4.063 17 H 0.083 0.917 18 C -0.021 4.021 19 C -0.144 4.144 20 C -0.080 4.080 21 C -0.218 4.218 22 C 0.120 3.880 23 O -0.321 6.321 24 C 0.029 3.971 25 C -0.151 4.151 26 C 0.059 3.941 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 11.884 10.501 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C 0.100 3.900 4 H 0.060 0.940 5 C -0.581 4.581 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.251 5.251 14 C -0.082 4.082 15 C -0.165 4.165 16 C -0.082 4.082 17 H 0.101 0.899 18 C -0.021 4.021 19 C -0.162 4.162 20 C -0.098 4.098 21 C -0.237 4.237 22 C 0.075 3.925 23 O -0.235 6.235 24 C -0.066 4.066 25 C -0.169 4.169 26 C -0.069 4.069 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.258 11.730 10.487 15.737 hybrid contribution 2.294 0.203 -0.464 2.350 sum 2.552 11.933 10.023 15.791 Atomic orbital electron populations 1.21707 0.98655 0.98463 1.00782 1.21467 0.92542 0.99206 1.00777 1.19440 0.93227 0.91063 0.86298 0.94009 1.21773 0.92617 1.42577 1.01175 0.92257 1.24915 0.97478 0.95346 0.95519 1.69946 1.34945 1.44041 1.03177 0.86769 0.86574 0.78476 0.77312 1.20706 1.21312 1.19986 1.63892 1.53891 1.01810 1.05517 1.22706 0.95870 0.96663 0.92957 1.22854 0.99434 0.94560 0.99636 1.21357 0.96792 0.90956 0.99063 0.89883 1.19655 0.94512 0.94195 0.93782 1.21157 0.95456 0.98826 1.00726 1.20928 0.99058 0.92600 0.97262 1.21131 0.98961 1.00875 1.02738 1.18956 0.93985 0.87689 0.91843 1.86046 1.51239 1.23008 1.63197 1.22994 0.94810 0.86534 1.02257 1.20293 1.01464 0.91523 1.03665 1.22941 0.99942 0.90281 0.93716 0.93106 0.94168 0.95620 0.90770 0.94819 0.92941 0.92950 0.90714 0.92170 0.91352 0.84983 0.86008 0.86036 0.92872 0.92795 0.88555 0.85512 0.91957 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.44 16 2 C -0.10 -2.35 5.26 -26.74 -0.14 -2.49 16 3 C 0.21 4.95 1.49 -68.87 -0.10 4.85 16 4 H 0.04 1.14 8.04 -51.93 -0.42 0.72 16 5 C -0.54 -13.87 6.30 -34.44 -0.22 -14.09 16 6 H 0.06 1.50 6.06 -52.49 -0.32 1.18 16 7 C 0.07 1.87 5.21 -17.82 -0.09 1.77 16 8 N -0.88 -24.56 12.00 55.43 0.67 -23.89 16 9 Si 0.88 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.53 -10.92 4.59 -224.68 -1.03 -11.95 16 14 C 0.05 0.88 5.32 -2.83 -0.02 0.86 16 15 C -0.13 -2.11 6.15 -24.91 -0.15 -2.26 16 16 C -0.06 -1.01 3.25 -89.63 -0.29 -1.31 16 17 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 18 C -0.02 -0.33 4.99 -104.65 -0.52 -0.85 16 19 C -0.14 -2.29 8.29 -39.56 -0.33 -2.62 16 20 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 21 C -0.22 -2.83 9.04 -39.43 -0.36 -3.18 16 22 C 0.12 1.67 6.69 -39.21 -0.26 1.40 16 23 O -0.32 -4.05 10.50 -19.41 -0.20 -4.25 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.15 -2.20 9.63 -39.43 -0.38 -2.58 16 26 C 0.06 1.14 5.89 -2.30 -0.01 1.12 16 27 H 0.05 0.99 7.76 -51.93 -0.40 0.59 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.92 6.66 -51.92 -0.35 1.57 16 31 H 0.03 0.76 7.04 -51.93 -0.37 0.39 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.58 5.60 -51.93 -0.29 1.29 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.21 6.68 -51.93 -0.35 0.86 16 37 H 0.13 2.32 7.01 -52.49 -0.37 1.95 16 38 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.13 1.69 7.98 -52.49 -0.42 1.27 16 44 H 0.06 1.32 5.71 -51.93 -0.30 1.03 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -27.77 348.46 -9.46 -37.24 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.21 Total: 4.09 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.92 Total: -22.09 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.37 Total: -35.84 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.77 -9.46 -37.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.589 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds