Wall clock time and date at job start Tue Mar 31 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47558 * 2 1 4 4 H 1.08998 * 109.47324 * 305.25005 * 3 2 1 5 5 C 1.50702 * 109.47179 * 185.24925 * 3 2 1 6 6 H 1.08002 * 120.00278 * 245.00954 * 5 3 2 7 7 C 1.37883 * 119.99672 * 65.28721 * 5 3 2 8 8 N 1.31511 * 119.99959 * 6.50702 * 7 5 3 9 9 Si 1.86797 * 119.99788 * 186.50568 * 7 5 3 10 10 H 1.48504 * 109.47371 * 94.01288 * 9 7 5 11 11 H 1.48502 * 109.47142 * 214.01362 * 9 7 5 12 12 H 1.48504 * 109.47284 * 334.01072 * 9 7 5 13 13 N 1.46905 * 109.46939 * 65.25103 * 3 2 1 14 14 C 1.47446 * 110.99847 * 69.87509 * 13 3 2 15 15 C 1.54319 * 107.23388 * 123.25430 * 14 13 3 16 16 C 1.55141 * 103.01578 * 22.28563 * 15 14 13 17 17 H 1.09002 * 110.99262 * 82.43860 * 16 15 14 18 18 C 1.50702 * 110.98878 * 206.21593 * 16 15 14 19 19 C 1.38288 * 119.97442 * 58.26797 * 18 16 15 20 20 C 1.38243 * 120.11311 * 179.72907 * 19 18 16 21 21 C 1.38166 * 120.05494 * 0.54407 * 20 19 18 22 22 C 1.38712 * 119.94392 * 359.73405 * 21 20 19 23 23 O 1.35896 * 120.05800 * 179.97438 * 22 21 20 24 24 C 1.42907 * 116.99938 * 0.02562 * 23 22 21 25 25 C 1.38122 * 119.97129 * 238.54778 * 18 16 15 26 26 C 1.47842 * 110.99849 * 190.71568 * 13 3 2 27 27 H 1.08998 * 109.46828 * 300.00038 * 1 2 3 28 28 H 1.08997 * 109.46866 * 59.99582 * 1 2 3 29 29 H 1.09000 * 109.47932 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46931 * 240.00016 * 2 1 3 31 31 H 1.09000 * 109.47000 * 120.01172 * 2 1 3 32 32 H 0.97001 * 119.99898 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.88589 * 242.66228 * 14 13 3 34 34 H 1.09000 * 109.88703 * 3.84951 * 14 13 3 35 35 H 1.09004 * 110.70224 * 140.66335 * 15 14 13 36 36 H 1.08997 * 110.70770 * 263.72233 * 15 14 13 37 37 H 1.08000 * 119.94131 * 359.97438 * 19 18 16 38 38 H 1.08003 * 119.97336 * 180.25814 * 20 19 18 39 39 H 1.07997 * 120.02748 * 179.70322 * 21 20 19 40 40 H 1.09001 * 109.46966 * 299.99615 * 24 23 22 41 41 H 1.08998 * 109.47075 * 59.99712 * 24 23 22 42 42 H 1.09000 * 109.46926 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.03062 * 0.02562 * 25 18 16 44 44 H 1.09000 * 110.37680 * 332.46187 * 26 13 3 45 45 H 1.09000 * 110.37361 * 94.80982 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6021 1.9827 -0.8392 5 6 3.5415 1.4443 -0.1300 6 1 4.1532 1.8140 0.6797 7 6 4.1340 0.9792 -1.2849 8 7 3.3910 0.6543 -2.3203 9 14 5.9920 0.8107 -1.3788 10 1 6.3823 -0.5757 -1.0171 11 1 6.4468 1.1084 -2.7608 12 1 6.6241 1.7656 -0.4333 13 7 1.6566 2.0973 1.2578 14 6 2.4142 1.5426 2.3947 15 6 3.1429 2.7197 3.0765 16 6 2.3076 3.9504 2.6353 17 1 1.4283 4.0726 3.2678 18 6 3.1479 5.2014 2.6362 19 6 4.2893 5.2677 1.8584 20 6 5.0591 6.4159 1.8528 21 6 4.6958 7.4964 2.6334 22 6 3.5544 7.4305 3.4189 23 8 3.1951 8.4917 4.1880 24 6 4.0390 9.6440 4.1386 25 6 2.7804 6.2788 3.4185 26 6 1.9034 3.5536 1.1935 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 3.8079 0.3275 -3.1329 33 1 1.7308 1.0705 3.1006 34 1 3.1413 0.8143 2.0356 35 1 3.1231 2.6091 4.1607 36 1 4.1689 2.7979 2.7172 37 1 4.5776 4.4223 1.2512 38 1 5.9479 6.4667 1.2412 39 1 5.3001 8.3915 2.6323 40 1 5.0433 9.3730 4.4642 41 1 4.0779 10.0223 3.1171 42 1 3.6397 10.4152 4.7972 43 1 1.8915 6.2249 4.0296 44 1 2.7146 3.7708 0.4987 45 1 0.9962 4.0793 0.8955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:07 Heat of formation + Delta-G solvation = -32.414543 kcal Electronic energy + Delta-G solvation = -23546.383311 eV Core-core repulsion = 20334.966323 eV Total energy + Delta-G solvation = -3211.416988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26514 -40.12950 -38.30138 -35.90471 -33.79287 -32.60755 -31.43551 -30.45651 -29.07763 -28.17104 -27.75147 -24.91093 -23.59753 -23.24346 -22.69248 -21.02237 -20.50465 -18.60731 -18.46324 -17.22152 -17.14964 -16.89628 -16.60560 -16.18209 -15.91373 -15.06754 -14.88303 -14.61446 -14.39390 -14.28635 -14.07133 -13.81283 -13.73165 -13.26536 -13.16813 -12.94559 -12.79298 -12.68152 -12.47042 -12.36934 -12.15675 -12.04566 -11.94247 -11.77390 -11.63243 -11.49377 -11.47506 -11.21642 -10.93584 -10.42184 -9.72967 -9.15190 -8.86661 -8.03909 -6.20553 0.35746 0.49333 1.36002 1.39027 1.46430 2.37163 2.41048 2.77438 3.18347 3.45956 3.85633 3.88009 3.99629 4.04886 4.22579 4.27795 4.36401 4.41690 4.45187 4.56139 4.57379 4.60138 4.70973 4.73851 4.75931 4.85868 4.91135 4.98258 5.08108 5.09003 5.18178 5.24872 5.29604 5.32602 5.39036 5.45335 5.52725 5.54658 5.67271 5.77153 5.79898 5.81695 5.98479 6.22574 6.42681 6.47931 6.64157 7.01026 7.48417 8.95300 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.004591 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.758078 B = 6097.713498 C = 7159.901436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C 0.215 3.785 4 H 0.001 0.999 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.023 3.977 8 N -0.915 5.915 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.527 5.527 14 C 0.046 3.954 15 C -0.119 4.119 16 C -0.048 4.048 17 H 0.101 0.899 18 C -0.030 4.030 19 C -0.165 4.165 20 C -0.084 4.084 21 C -0.212 4.212 22 C 0.119 3.881 23 O -0.334 6.334 24 C 0.018 3.982 25 C -0.158 4.158 26 C 0.058 3.942 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.151 0.849 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.034 0.966 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 13.513 12.671 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.135 4.135 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.554 5.554 9 Si 0.764 3.236 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.250 5.250 14 C -0.082 4.082 15 C -0.157 4.157 16 C -0.067 4.067 17 H 0.119 0.881 18 C -0.031 4.031 19 C -0.183 4.183 20 C -0.102 4.102 21 C -0.231 4.231 22 C 0.074 3.926 23 O -0.248 6.248 24 C -0.076 4.076 25 C -0.176 4.176 26 C -0.070 4.070 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.052 0.948 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.663 13.372 12.677 18.438 hybrid contribution 2.164 -0.179 -1.096 2.432 sum 2.827 13.193 11.581 17.781 Atomic orbital electron populations 1.21574 0.96174 0.99915 1.00759 1.21325 0.94729 0.98142 0.99308 1.19178 0.92115 0.91337 0.86616 0.98060 1.22016 0.93682 1.41482 1.00864 0.92435 1.25583 1.01250 0.95482 0.95393 1.70068 1.36425 1.45297 1.03613 0.85862 0.82115 0.78458 0.77161 1.20374 1.21333 1.19363 1.63855 1.54033 1.02573 1.04559 1.22725 0.95774 0.97053 0.92638 1.22780 0.98277 0.93670 1.01006 1.21233 0.97421 0.91219 0.96819 0.88059 1.19533 0.94499 0.94379 0.94682 1.21055 0.96680 0.99049 1.01510 1.21133 0.99308 0.92209 0.97545 1.21418 0.98796 1.01361 1.01484 1.19076 0.93865 0.87968 0.91723 1.86038 1.52413 1.23610 1.62718 1.23341 0.95114 0.85547 1.03610 1.20410 1.02068 0.91535 1.03604 1.22916 0.99075 0.89470 0.95516 0.92132 0.95078 0.93411 0.93869 0.94495 0.93130 0.90992 0.93236 0.89351 0.92880 0.87671 0.84435 0.83097 0.91747 0.91894 0.86186 0.84352 0.94795 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.80 71.98 0.71 -4.38 16 2 C -0.10 -4.57 5.26 30.59 0.16 -4.41 16 3 C 0.22 10.70 1.49 44.17 0.07 10.76 16 4 H 0.00 0.08 8.04 -2.39 -0.02 0.06 16 5 C -0.54 -28.65 6.30 25.60 0.16 -28.49 16 6 H 0.06 3.01 6.06 -2.91 -0.02 3.00 16 7 C 0.02 1.24 5.21 84.66 0.44 1.68 16 8 N -0.91 -52.74 12.00 21.45 0.26 -52.48 16 9 Si 0.94 43.30 29.54 68.60 2.03 45.32 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.53 -22.04 4.59 -864.75 -3.97 -26.01 16 14 C 0.05 1.73 5.32 86.65 0.46 2.19 16 15 C -0.12 -3.85 6.15 31.78 0.20 -3.66 16 16 C -0.05 -1.51 3.25 -10.15 -0.03 -1.55 16 17 H 0.10 2.84 7.96 -2.39 -0.02 2.82 16 18 C -0.03 -0.93 4.99 -19.88 -0.10 -1.03 16 19 C -0.16 -5.28 8.29 22.28 0.18 -5.10 16 20 C -0.08 -2.25 10.04 22.25 0.22 -2.03 16 21 C -0.21 -4.96 9.04 22.37 0.20 -4.76 16 22 C 0.12 3.02 6.69 22.51 0.15 3.17 16 23 O -0.33 -7.46 10.50 -92.39 -0.97 -8.43 16 24 C 0.02 0.24 9.81 113.37 1.11 1.35 16 25 C -0.16 -4.32 9.63 22.37 0.22 -4.10 16 26 C 0.06 2.28 5.89 86.77 0.51 2.79 16 27 H 0.06 2.29 7.76 -2.39 -0.02 2.28 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 2.30 6.66 -2.38 -0.02 2.29 16 31 H 0.04 1.68 7.04 -2.39 -0.02 1.67 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 34 H 0.05 2.11 5.60 -2.39 -0.01 2.10 16 35 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.05 1.88 6.68 -2.39 -0.02 1.87 16 37 H 0.11 3.89 7.01 -2.91 -0.02 3.87 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 40 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 41 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.14 3.38 7.98 -2.91 -0.02 3.36 16 44 H 0.03 1.51 5.71 -2.39 -0.01 1.50 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -61.42 348.46 2.96 -58.45 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.96 Total: 20.70 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.66 Total: -37.56 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.71 Total: -78.49 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.97 Total: -8.43 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.42 2.96 -58.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.039 kcal (2) G-P(sol) polarization free energy of solvation -61.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds