Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47476 * 2 1 4 4 H 1.09002 * 109.46512 * 304.99935 * 3 2 1 5 5 C 1.50696 * 109.47255 * 185.00412 * 3 2 1 6 6 H 1.08004 * 119.99880 * 240.00092 * 5 3 2 7 7 C 1.37877 * 120.00302 * 59.99275 * 5 3 2 8 8 N 1.31513 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00029 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46817 * 90.00635 * 9 7 5 11 11 H 1.48504 * 109.47232 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47304 * 330.00941 * 9 7 5 13 13 N 1.46897 * 109.47155 * 64.99935 * 3 2 1 14 14 C 1.47845 * 111.00016 * 59.16084 * 13 3 2 15 15 C 1.54905 * 104.79816 * 146.36286 * 14 13 3 16 16 C 1.55140 * 101.65157 * 322.92798 * 15 14 13 17 17 H 1.08995 * 110.85778 * 277.20379 * 16 15 14 18 18 C 1.50698 * 110.70496 * 154.03205 * 16 15 14 19 19 C 1.38289 * 119.97869 * 306.63503 * 18 16 15 20 20 C 1.38237 * 120.11494 * 180.27323 * 19 18 16 21 21 C 1.38167 * 120.05858 * 359.74537 * 20 19 18 22 22 C 1.38709 * 119.93745 * 0.02562 * 21 20 19 23 23 O 1.35906 * 120.05198 * 179.97438 * 22 21 20 24 24 C 1.42899 * 117.00229 * 0.02562 * 23 22 21 25 25 C 1.38125 * 119.96886 * 126.39952 * 18 16 15 26 26 C 1.47443 * 110.99992 * 180.02562 * 13 3 2 27 27 H 1.08994 * 109.47239 * 59.99676 * 1 2 3 28 28 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46635 * 300.00054 * 1 2 3 30 30 H 1.09001 * 109.46837 * 239.99503 * 2 1 3 31 31 H 1.09004 * 109.47170 * 120.00270 * 2 1 3 32 32 H 0.97002 * 120.00358 * 179.97438 * 8 7 5 33 33 H 1.09002 * 110.37391 * 265.19720 * 14 13 3 34 34 H 1.09003 * 110.37520 * 27.52996 * 14 13 3 35 35 H 1.08997 * 110.99013 * 204.83876 * 15 14 13 36 36 H 1.09001 * 110.98883 * 81.02275 * 15 14 13 37 37 H 1.08001 * 119.93832 * 0.02562 * 19 18 16 38 38 H 1.08006 * 119.97272 * 179.72959 * 20 19 18 39 39 H 1.07993 * 120.03379 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47366 * 59.99267 * 24 23 22 41 41 H 1.08991 * 109.47455 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46748 * 299.99921 * 24 23 22 43 43 H 1.08002 * 120.03152 * 0.02562 * 25 18 16 44 44 H 1.09001 * 109.88477 * 117.33819 * 26 13 3 45 45 H 1.09004 * 109.88590 * 356.14922 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8782 -1.2280 8 7 3.4061 0.3372 -2.1733 9 14 6.0049 0.8811 -1.3819 10 1 6.5548 -0.3505 -0.7603 11 1 6.3829 0.9221 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6515 2.0993 1.2552 14 6 2.2075 1.3824 2.4225 15 6 2.5049 2.4910 3.4628 16 6 2.9987 3.6481 2.5550 17 1 4.0544 3.5275 2.3123 18 6 2.7539 4.9822 3.2118 19 6 1.4883 5.3080 3.6638 20 6 1.2593 6.5332 4.2616 21 6 2.2963 7.4335 4.4138 22 6 3.5677 7.1072 3.9656 23 8 4.5893 7.9913 4.1136 24 6 4.2825 9.2383 4.7403 25 6 3.7951 5.8766 3.3663 26 6 2.1266 3.4946 1.2906 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8291 -0.0607 -2.9503 33 1 1.4767 0.6769 2.8181 34 1 3.1260 0.8640 2.1473 35 1 3.2861 2.1773 4.1552 36 1 1.6001 2.7750 4.0001 37 1 0.6764 4.6056 3.5459 38 1 0.2690 6.7870 4.6099 39 1 2.1169 8.3908 4.8805 40 1 3.9047 9.0561 5.7464 41 1 5.1839 9.8485 4.7960 42 1 3.5247 9.7613 4.1569 43 1 4.7842 5.6204 3.0162 44 1 1.2763 4.1746 1.3413 45 1 2.7213 3.7064 0.4019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = -16.498659 kcal Electronic energy + Delta-G solvation = -23421.574568 eV Core-core repulsion = 20210.847745 eV Total energy + Delta-G solvation = -3210.726823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21096 -38.77246 -37.13726 -34.24414 -31.97364 -31.12107 -30.33179 -29.09115 -27.58160 -27.17137 -26.10450 -23.11858 -22.53382 -21.96235 -21.05923 -19.72392 -18.84406 -17.62774 -16.30794 -16.24572 -15.92863 -15.80352 -15.26741 -14.87097 -14.20599 -13.78054 -13.64505 -13.18895 -12.98371 -12.77436 -12.65050 -12.36040 -12.31118 -12.02945 -11.73005 -11.45536 -11.29389 -11.13638 -11.01206 -10.90767 -10.67375 -10.59787 -10.49927 -10.30651 -10.07350 -9.98257 -9.61956 -9.47906 -8.99069 -8.62412 -8.34292 -8.09545 -7.11976 -5.97228 -4.10238 1.42067 1.54743 3.21478 3.27209 3.34947 3.37525 3.84773 4.40514 4.76519 4.84845 4.96705 4.99483 5.10281 5.21688 5.26851 5.27730 5.35935 5.43933 5.49352 5.59488 5.65381 5.93589 6.08050 6.11529 6.21035 6.34074 6.36631 6.37275 6.49286 6.54312 6.63333 6.69285 6.71696 6.77329 6.86195 6.87703 7.00573 7.10228 7.22105 7.35079 7.41133 7.65191 7.77442 8.01197 8.18467 8.32347 8.48049 9.00406 9.56762 11.01825 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.004375 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.932825 B = 6398.782765 C = 7544.559556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.207 3.793 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.526 5.526 14 C 0.047 3.953 15 C -0.119 4.119 16 C -0.072 4.072 17 H 0.083 0.917 18 C -0.017 4.017 19 C -0.147 4.147 20 C -0.082 4.082 21 C -0.220 4.220 22 C 0.123 3.877 23 O -0.320 6.320 24 C 0.029 3.971 25 C -0.151 4.151 26 C 0.063 3.937 27 H 0.039 0.961 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.128 0.872 44 H 0.058 0.942 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 11.949 12.999 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.101 3.899 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.250 5.250 14 C -0.081 4.081 15 C -0.157 4.157 16 C -0.092 4.092 17 H 0.101 0.899 18 C -0.017 4.017 19 C -0.165 4.165 20 C -0.100 4.100 21 C -0.239 4.239 22 C 0.079 3.921 23 O -0.234 6.234 24 C -0.066 4.066 25 C -0.169 4.169 26 C -0.066 4.066 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.076 0.924 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.696 11.823 12.753 17.599 hybrid contribution 1.849 0.222 -0.124 1.867 sum -0.847 12.046 12.630 17.474 Atomic orbital electron populations 1.21713 0.98898 0.98364 1.00584 1.21597 0.92235 0.99227 1.01954 1.19464 0.93010 0.91176 0.86292 0.94415 1.21770 0.92731 1.37983 1.05461 0.92482 1.24910 0.97670 0.95093 0.95735 1.69873 1.34732 1.38306 1.09412 0.86722 0.86400 0.78394 0.77265 1.20729 1.21225 1.20013 1.63948 1.56128 1.00812 1.04125 1.22910 0.99122 0.95678 0.90360 1.22815 1.00269 0.95250 0.97380 1.21498 1.01235 0.90280 0.96141 0.89895 1.19724 0.92401 0.94983 0.94626 1.20998 0.97133 0.97233 1.01172 1.20882 0.98154 0.93407 0.97555 1.21118 0.92907 1.01643 1.08251 1.18987 0.86777 0.90037 0.96344 1.86069 1.34420 1.26610 1.76280 1.22998 1.02705 0.83956 0.96934 1.20383 1.00360 0.92059 1.04125 1.22707 0.96038 0.91994 0.95853 0.94205 0.95653 0.93431 0.89022 0.94977 0.92927 0.92084 0.91922 0.91941 0.91336 0.85421 0.86084 0.86026 0.92870 0.88518 0.92793 0.85404 0.92375 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.15 0.36 -2.45 16 2 C -0.11 -2.62 5.10 -26.73 -0.14 -2.76 16 3 C 0.21 5.03 1.67 -68.87 -0.11 4.91 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.08 6.23 -34.44 -0.21 -14.30 16 6 H 0.06 1.48 6.38 -52.48 -0.33 1.15 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.67 11.29 55.43 0.63 -24.05 16 9 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -10.92 4.66 -224.65 -1.05 -11.97 16 14 C 0.05 0.90 4.96 -2.30 -0.01 0.88 16 15 C -0.12 -1.90 6.45 -24.59 -0.16 -2.06 16 16 C -0.07 -1.22 2.96 -89.92 -0.27 -1.48 16 17 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 18 C -0.02 -0.25 4.92 -104.65 -0.51 -0.77 16 19 C -0.15 -2.02 8.16 -39.56 -0.32 -2.35 16 20 C -0.08 -0.99 10.04 -39.61 -0.40 -1.38 16 21 C -0.22 -2.65 9.04 -39.43 -0.36 -3.01 16 22 C 0.12 1.70 6.69 -39.22 -0.26 1.44 16 23 O -0.32 -4.12 10.50 -19.44 -0.20 -4.32 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.15 -2.26 9.62 -39.43 -0.38 -2.64 16 26 C 0.06 1.21 5.70 -2.81 -0.02 1.19 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.93 7.75 -51.93 -0.40 0.52 16 30 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 31 H 0.03 0.74 6.86 -51.93 -0.36 0.38 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.06 1.33 6.20 -51.93 -0.32 1.01 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 37 H 0.13 1.71 7.26 -52.49 -0.38 1.32 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.15 6.30 -52.49 -0.33 0.81 16 40 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 43 H 0.13 1.90 7.98 -52.49 -0.42 1.48 16 44 H 0.06 1.06 7.12 -51.93 -0.37 0.69 16 45 H 0.07 1.46 6.84 -51.93 -0.36 1.10 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -28.11 347.34 -9.52 -37.63 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.22 Total: 3.32 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.89 Total: -21.80 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.42 Total: -36.02 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.20 Total: -4.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.11 -9.52 -37.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.130 kcal (2) G-P(sol) polarization free energy of solvation -28.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds