Wall clock time and date at job start Tue Mar 31 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47476 * 2 1 4 4 H 1.09002 * 109.46512 * 304.99935 * 3 2 1 5 5 C 1.50696 * 109.47255 * 185.00412 * 3 2 1 6 6 H 1.08004 * 119.99880 * 240.00092 * 5 3 2 7 7 C 1.37877 * 120.00302 * 59.99275 * 5 3 2 8 8 N 1.31513 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00029 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46817 * 90.00635 * 9 7 5 11 11 H 1.48504 * 109.47232 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47304 * 330.00941 * 9 7 5 13 13 N 1.46897 * 109.47155 * 64.99935 * 3 2 1 14 14 C 1.47845 * 111.00016 * 59.16084 * 13 3 2 15 15 C 1.54905 * 104.79816 * 146.36286 * 14 13 3 16 16 C 1.55140 * 101.65157 * 322.92798 * 15 14 13 17 17 H 1.08995 * 110.85778 * 277.20379 * 16 15 14 18 18 C 1.50698 * 110.70496 * 154.03205 * 16 15 14 19 19 C 1.38289 * 119.97869 * 306.63503 * 18 16 15 20 20 C 1.38237 * 120.11494 * 180.27323 * 19 18 16 21 21 C 1.38167 * 120.05858 * 359.74537 * 20 19 18 22 22 C 1.38709 * 119.93745 * 0.02562 * 21 20 19 23 23 O 1.35906 * 120.05198 * 179.97438 * 22 21 20 24 24 C 1.42899 * 117.00229 * 0.02562 * 23 22 21 25 25 C 1.38125 * 119.96886 * 126.39952 * 18 16 15 26 26 C 1.47443 * 110.99992 * 180.02562 * 13 3 2 27 27 H 1.08994 * 109.47239 * 59.99676 * 1 2 3 28 28 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46635 * 300.00054 * 1 2 3 30 30 H 1.09001 * 109.46837 * 239.99503 * 2 1 3 31 31 H 1.09004 * 109.47170 * 120.00270 * 2 1 3 32 32 H 0.97002 * 120.00358 * 179.97438 * 8 7 5 33 33 H 1.09002 * 110.37391 * 265.19720 * 14 13 3 34 34 H 1.09003 * 110.37520 * 27.52996 * 14 13 3 35 35 H 1.08997 * 110.99013 * 204.83876 * 15 14 13 36 36 H 1.09001 * 110.98883 * 81.02275 * 15 14 13 37 37 H 1.08001 * 119.93832 * 0.02562 * 19 18 16 38 38 H 1.08006 * 119.97272 * 179.72959 * 20 19 18 39 39 H 1.07993 * 120.03379 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47366 * 59.99267 * 24 23 22 41 41 H 1.08991 * 109.47455 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.46748 * 299.99921 * 24 23 22 43 43 H 1.08002 * 120.03152 * 0.02562 * 25 18 16 44 44 H 1.09001 * 109.88477 * 117.33819 * 26 13 3 45 45 H 1.09004 * 109.88590 * 356.14922 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8782 -1.2280 8 7 3.4061 0.3372 -2.1733 9 14 6.0049 0.8811 -1.3819 10 1 6.5548 -0.3505 -0.7603 11 1 6.3829 0.9221 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6515 2.0993 1.2552 14 6 2.2075 1.3824 2.4225 15 6 2.5049 2.4910 3.4628 16 6 2.9987 3.6481 2.5550 17 1 4.0544 3.5275 2.3123 18 6 2.7539 4.9822 3.2118 19 6 1.4883 5.3080 3.6638 20 6 1.2593 6.5332 4.2616 21 6 2.2963 7.4335 4.4138 22 6 3.5677 7.1072 3.9656 23 8 4.5893 7.9913 4.1136 24 6 4.2825 9.2383 4.7403 25 6 3.7951 5.8766 3.3663 26 6 2.1266 3.4946 1.2906 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8291 -0.0607 -2.9503 33 1 1.4767 0.6769 2.8181 34 1 3.1260 0.8640 2.1473 35 1 3.2861 2.1773 4.1552 36 1 1.6001 2.7750 4.0001 37 1 0.6764 4.6056 3.5459 38 1 0.2690 6.7870 4.6099 39 1 2.1169 8.3908 4.8805 40 1 3.9047 9.0561 5.7464 41 1 5.1839 9.8485 4.7960 42 1 3.5247 9.7613 4.1569 43 1 4.7842 5.6204 3.0162 44 1 1.2763 4.1746 1.3413 45 1 2.7213 3.7064 0.4019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:09 Heat of formation + Delta-G solvation = -31.747591 kcal Electronic energy + Delta-G solvation = -23422.235811 eV Core-core repulsion = 20210.847745 eV Total energy + Delta-G solvation = -3211.388066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26279 -40.15125 -38.31894 -35.91817 -33.79232 -32.51243 -31.45444 -30.56294 -28.83891 -28.20441 -27.83902 -24.91525 -23.55956 -23.19229 -22.71461 -20.94406 -20.67740 -18.74557 -18.19376 -17.32512 -17.05932 -16.89507 -16.61501 -16.18258 -15.99210 -15.08913 -14.91310 -14.67654 -14.35066 -14.14516 -14.04621 -13.79820 -13.70745 -13.28842 -13.01224 -12.96723 -12.81782 -12.65400 -12.50286 -12.40008 -12.31613 -12.00090 -11.87957 -11.76346 -11.63522 -11.52712 -11.42861 -11.29489 -10.88123 -10.41510 -9.72059 -9.09804 -8.91346 -8.01831 -6.23163 0.38640 0.52812 1.35270 1.37811 1.45742 2.38633 2.39758 2.80983 3.16320 3.53071 3.74868 3.90403 3.98068 4.07007 4.19425 4.28788 4.36510 4.40981 4.46611 4.58916 4.60046 4.65255 4.67559 4.74009 4.76270 4.91580 4.93417 4.99617 5.06852 5.12831 5.15768 5.21597 5.28604 5.36408 5.42347 5.47541 5.51095 5.54438 5.64447 5.78184 5.81810 5.87736 6.07510 6.22402 6.43111 6.49770 6.62548 6.98446 7.46632 8.93124 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.004375 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.932825 B = 6398.782765 C = 7544.559556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.047 3.953 15 C -0.106 4.106 16 C -0.063 4.063 17 H 0.061 0.939 18 C -0.029 4.029 19 C -0.155 4.155 20 C -0.075 4.075 21 C -0.214 4.214 22 C 0.116 3.884 23 O -0.342 6.342 24 C 0.019 3.981 25 C -0.174 4.174 26 C 0.065 3.935 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 13.447 15.420 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.247 5.247 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.082 4.082 17 H 0.079 0.921 18 C -0.030 4.030 19 C -0.173 4.173 20 C -0.093 4.093 21 C -0.232 4.232 22 C 0.071 3.929 23 O -0.257 6.257 24 C -0.075 4.075 25 C -0.193 4.193 26 C -0.063 4.063 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.133 0.867 44 H 0.089 0.911 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.593 13.333 15.190 20.529 hybrid contribution 2.129 -0.122 -0.837 2.291 sum -1.464 13.211 14.354 19.563 Atomic orbital electron populations 1.21576 0.96273 0.99810 1.00697 1.21437 0.94539 0.98092 1.00411 1.19206 0.91765 0.91519 0.86765 0.98274 1.22000 0.93921 1.37225 1.05159 0.93065 1.25574 1.01415 0.95136 0.95674 1.69999 1.36096 1.39158 1.09815 0.85828 0.81966 0.78355 0.77136 1.20140 1.20995 1.19987 1.63908 1.56093 1.01398 1.03324 1.22927 0.98118 0.96615 0.90453 1.22761 1.01622 0.93367 0.96587 1.21285 0.99341 0.92300 0.95319 0.92050 1.19520 0.93450 0.94100 0.95906 1.21106 0.96326 0.98350 1.01485 1.21254 0.99633 0.92312 0.96088 1.21479 0.91878 1.02796 1.07084 1.19094 0.87851 0.89777 0.96169 1.86045 1.34796 1.28042 1.76768 1.23335 1.04329 0.82346 0.97515 1.20401 0.99978 0.93348 1.05573 1.22661 0.96452 0.91398 0.95800 0.95013 0.93522 0.92289 0.92095 0.94840 0.93023 0.90721 0.94664 0.90478 0.89225 0.84907 0.82806 0.82972 0.91399 0.86621 0.91667 0.86724 0.91051 0.95062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.80 71.98 0.71 -4.36 16 2 C -0.11 -5.08 5.10 30.59 0.16 -4.93 16 3 C 0.22 10.81 1.67 44.17 0.07 10.88 16 4 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 5 C -0.54 -29.43 6.23 25.60 0.16 -29.27 16 6 H 0.05 2.78 6.38 -2.91 -0.02 2.76 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -52.50 11.29 21.45 0.24 -52.25 16 9 Si 0.94 44.14 29.54 68.60 2.03 46.17 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.52 -22.00 4.66 -864.64 -4.03 -26.03 16 14 C 0.05 1.75 4.96 86.77 0.43 2.18 16 15 C -0.11 -3.23 6.45 31.98 0.21 -3.03 16 16 C -0.06 -2.14 2.96 -10.34 -0.03 -2.17 16 17 H 0.06 2.32 7.72 -2.39 -0.02 2.30 16 18 C -0.03 -0.87 4.92 -19.88 -0.10 -0.97 16 19 C -0.15 -3.89 8.16 22.28 0.18 -3.71 16 20 C -0.08 -1.54 10.04 22.25 0.22 -1.31 16 21 C -0.21 -4.43 9.04 22.37 0.20 -4.23 16 22 C 0.12 3.03 6.69 22.51 0.15 3.18 16 23 O -0.34 -8.33 10.50 -92.49 -0.97 -9.30 16 24 C 0.02 0.26 9.81 113.37 1.11 1.37 16 25 C -0.17 -5.25 9.62 22.37 0.22 -5.03 16 26 C 0.07 2.58 5.70 86.66 0.49 3.07 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 2.22 7.75 -2.38 -0.02 2.20 16 30 H 0.06 3.31 5.95 -2.39 -0.01 3.30 16 31 H 0.03 1.55 6.86 -2.39 -0.02 1.53 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 34 H 0.03 1.52 6.20 -2.39 -0.01 1.50 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.40 6.74 -2.39 -0.02 2.39 16 37 H 0.13 3.17 7.26 -2.91 -0.02 3.15 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.15 2.17 6.30 -2.91 -0.02 2.15 16 40 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 43 H 0.11 3.60 7.98 -2.91 -0.02 3.58 16 44 H 0.07 2.61 7.12 -2.39 -0.02 2.59 16 45 H 0.03 1.44 6.84 -2.38 -0.02 1.42 16 Total: -1.00 -62.75 347.34 2.86 -59.89 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.96 Total: 18.20 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 4.63 Total: -36.68 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -3.79 Total: -78.28 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.97 Total: -9.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -62.75 2.86 -59.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -62.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds