Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.08989 * 109.47200 * 177.34715 * 3 2 1 5 5 C 1.50705 * 109.46861 * 297.34916 * 3 2 1 6 6 H 1.07996 * 119.99647 * 120.00158 * 5 3 2 7 7 C 1.37873 * 119.99749 * 299.72162 * 5 3 2 8 8 N 1.31506 * 120.00224 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99728 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47132 * 60.00361 * 9 7 5 11 11 H 1.48499 * 109.47250 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47674 * 300.00516 * 9 7 5 13 13 N 1.46898 * 109.47000 * 57.34581 * 3 2 1 14 14 C 1.45526 * 111.00236 * 186.44173 * 13 3 2 15 15 C 1.51504 * 114.60467 * 165.48502 * 14 13 3 16 16 C 1.53256 * 110.73236 * 67.78093 * 15 14 13 17 17 C 1.51437 * 108.15567 * 275.48394 * 16 15 14 18 18 C 1.38317 * 119.79224 * 249.27261 * 17 16 15 19 19 C 1.38215 * 119.68248 * 179.81421 * 18 17 16 20 20 C 1.38756 * 119.99707 * 0.02562 * 19 18 17 21 21 O 1.35902 * 120.01549 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00099 * 0.02562 * 21 20 19 23 23 C 1.38790 * 119.96765 * 0.02575 * 20 19 18 24 24 C 1.37317 * 119.75220 * 69.14678 * 17 16 15 25 25 C 1.46917 * 111.00023 * 60.28329 * 13 3 2 26 26 H 1.08999 * 109.47048 * 305.22950 * 1 2 3 27 27 H 1.08996 * 109.46932 * 65.23258 * 1 2 3 28 28 H 1.09003 * 109.46558 * 185.23610 * 1 2 3 29 29 H 1.08998 * 109.46878 * 239.99522 * 2 1 3 30 30 H 1.08996 * 109.46720 * 119.99686 * 2 1 3 31 31 H 0.97005 * 119.99902 * 180.02562 * 8 7 5 32 32 H 1.08998 * 108.45821 * 286.81972 * 14 13 3 33 33 H 1.09001 * 108.45278 * 44.15933 * 14 13 3 34 34 H 1.09000 * 109.22550 * 307.46170 * 15 14 13 35 35 H 1.09002 * 109.22736 * 188.10633 * 15 14 13 36 36 H 1.08998 * 109.72169 * 155.81721 * 16 15 14 37 37 H 1.09002 * 109.72144 * 35.14602 * 16 15 14 38 38 H 1.08011 * 120.15809 * 359.79258 * 18 17 16 39 39 H 1.08009 * 120.00322 * 180.02562 * 19 18 17 40 40 H 1.08994 * 109.47390 * 300.00047 * 22 21 20 41 41 H 1.09004 * 109.47087 * 59.99697 * 22 21 20 42 42 H 1.09001 * 109.47010 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.20596 * 180.02562 * 23 20 19 44 44 H 1.09003 * 109.61976 * 331.53915 * 25 13 3 45 45 H 1.09003 * 109.61985 * 91.90949 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1289 1.4429 0.0476 5 6 1.5921 2.1337 -1.2621 6 1 0.9677 3.0129 -1.2036 7 6 1.9840 1.6468 -2.4910 8 7 2.7484 0.5790 -2.5619 9 14 1.4281 2.5030 -4.0553 10 1 1.9169 3.9053 -4.0525 11 1 1.9814 1.7889 -5.2339 12 1 -0.0553 2.4961 -4.1232 13 7 1.4987 2.1532 1.1661 14 6 1.8387 3.5674 1.1190 15 6 1.0490 4.4382 2.0748 16 6 1.4194 4.1229 3.5281 17 6 0.5892 2.9400 3.9807 18 6 -0.4057 3.1196 4.9247 19 6 -1.1646 2.0392 5.3333 20 6 -0.9265 0.7817 4.7972 21 8 -1.6729 -0.2808 5.1983 22 6 -2.6859 -0.0305 6.1746 23 6 0.0743 0.6096 3.8511 24 6 0.8277 1.6967 3.4488 25 6 1.9213 1.5100 2.4175 26 1 -0.3633 0.5928 0.8394 27 1 -0.3633 0.4305 -0.9331 28 1 -0.3632 -1.0234 0.0938 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0244 0.2367 -3.4265 32 1 2.8986 3.6754 1.3492 33 1 1.6713 3.9289 0.1044 34 1 -0.0159 4.2574 1.9286 35 1 1.2661 5.4862 1.8683 36 1 1.2043 4.9859 4.1581 37 1 2.4789 3.8747 3.5921 38 1 -0.5883 4.0995 5.3409 39 1 -1.9431 2.1736 6.0699 40 1 -2.2272 0.3641 7.0812 41 1 -3.3975 0.6958 5.7818 42 1 -3.2060 -0.9602 6.4051 43 1 0.2627 -0.3673 3.4310 44 1 2.0844 0.4461 2.2454 45 1 2.8443 1.9693 2.7716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255180281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = -9.605060 kcal Electronic energy + Delta-G solvation = -24150.604203 eV Core-core repulsion = 20940.176308 eV Total energy + Delta-G solvation = -3210.427894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19268 -38.58594 -36.65164 -34.21497 -32.64183 -31.20167 -30.67372 -29.66094 -27.36099 -26.64682 -25.22808 -24.16498 -23.06752 -22.04089 -20.37550 -19.90334 -18.86605 -17.53060 -16.35695 -16.13241 -15.65193 -15.35579 -15.17385 -14.27856 -14.21459 -14.01101 -13.64023 -13.38541 -13.21559 -12.74087 -12.70826 -12.55047 -12.10743 -11.99176 -11.89499 -11.63770 -11.27543 -11.01031 -10.87286 -10.82941 -10.58552 -10.48347 -10.38882 -10.30222 -9.92382 -9.82926 -9.63258 -9.31919 -8.78902 -8.51550 -8.34805 -7.76997 -7.05837 -5.99118 -4.02700 1.62467 1.72012 3.32755 3.37643 3.38371 3.40585 3.99826 4.42774 4.89525 4.93625 5.05054 5.09245 5.11827 5.24664 5.35157 5.38042 5.41950 5.54105 5.57776 5.60502 5.84014 5.92917 6.02618 6.19025 6.21561 6.26836 6.34485 6.37480 6.53088 6.56264 6.64567 6.68601 6.78592 6.86901 6.89979 7.01021 7.13689 7.23667 7.39589 7.46943 7.59108 7.71119 7.81751 7.85164 8.26426 8.38301 8.64288 9.02491 9.61111 11.07159 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.004859 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.376602 B = 5761.545845 C = 6495.280277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.222 3.778 4 H -0.003 1.003 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.529 5.529 14 C 0.063 3.937 15 C -0.111 4.111 16 C -0.075 4.075 17 C -0.106 4.106 18 C -0.084 4.084 19 C -0.216 4.216 20 C 0.115 3.885 21 O -0.320 6.320 22 C 0.030 3.970 23 C -0.135 4.135 24 C -0.012 4.012 25 C 0.086 3.914 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.013 0.987 29 H 0.092 0.908 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.010 0.990 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 2.910 15.457 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.254 5.254 14 C -0.065 4.065 15 C -0.149 4.149 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.102 4.102 19 C -0.235 4.235 20 C 0.071 3.929 21 O -0.234 6.234 22 C -0.065 4.065 23 C -0.155 4.155 24 C -0.013 4.013 25 C -0.042 4.042 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.147 0.853 44 H 0.101 0.899 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.190 2.564 15.199 16.610 hybrid contribution 0.297 0.618 -0.622 0.926 sum -5.893 3.182 14.576 16.041 Atomic orbital electron populations 1.21463 0.97218 0.97308 1.01887 1.21600 0.95233 0.98076 0.99940 1.19228 0.92259 0.90766 0.86103 0.98529 1.21056 1.30993 1.12001 0.89709 0.91872 1.24880 0.95153 0.95066 0.98873 1.69865 1.35790 1.22609 1.24797 0.86651 0.79044 0.79525 0.82724 1.20420 1.21433 1.20258 1.60789 1.61923 1.01441 1.01218 1.21437 0.95220 0.89087 1.00800 1.21395 1.01710 0.98558 0.93284 1.20791 0.98720 0.94766 0.96977 1.19593 0.98365 0.94897 0.97841 1.20758 0.94977 0.97750 0.96739 1.21065 1.04335 0.92718 1.05377 1.18993 0.92473 0.86112 0.95336 1.86065 1.46737 1.33074 1.57507 1.22966 0.89916 1.02896 0.90731 1.20351 0.96352 1.00028 0.98722 1.19598 0.95949 0.91530 0.94249 1.21276 0.92516 1.00774 0.89592 0.93146 0.92931 0.96745 0.88999 0.96760 0.92965 0.97148 0.89064 0.91388 0.92138 0.91948 0.91402 0.86348 0.86230 0.93041 0.92920 0.88667 0.85350 0.89913 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.50 37.16 0.35 -2.36 16 2 C -0.11 -2.61 5.20 -26.73 -0.14 -2.75 16 3 C 0.22 5.39 1.77 -68.86 -0.12 5.27 16 4 H 0.00 -0.08 8.14 -51.94 -0.42 -0.50 16 5 C -0.50 -13.09 6.67 -34.44 -0.23 -13.32 16 6 H 0.06 1.66 6.32 -52.49 -0.33 1.33 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.53 -11.01 3.24 -231.09 -0.75 -11.76 16 14 C 0.06 1.21 4.72 -5.32 -0.03 1.18 16 15 C -0.11 -1.75 5.79 -27.36 -0.16 -1.91 16 16 C -0.08 -1.06 5.50 -27.39 -0.15 -1.21 16 17 C -0.11 -1.64 5.00 -104.57 -0.52 -2.16 16 18 C -0.08 -1.15 9.69 -39.56 -0.38 -1.53 16 19 C -0.22 -2.91 9.04 -39.40 -0.36 -3.27 16 20 C 0.12 1.76 6.69 -39.19 -0.26 1.50 16 21 O -0.32 -4.52 10.50 -19.43 -0.20 -4.73 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 C -0.14 -2.26 9.63 -39.38 -0.38 -2.64 16 24 C -0.01 -0.21 5.41 -104.58 -0.57 -0.77 16 25 C 0.09 1.59 4.97 -4.59 -0.02 1.57 16 26 H 0.05 1.11 7.36 -51.93 -0.38 0.73 16 27 H 0.05 1.27 7.48 -51.93 -0.39 0.88 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 2.43 6.03 -51.93 -0.31 2.12 16 30 H 0.01 0.31 6.09 -51.93 -0.32 -0.01 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.01 0.20 7.73 -51.93 -0.40 -0.20 16 33 H 0.09 1.94 5.52 -51.93 -0.29 1.65 16 34 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.74 7.93 -51.93 -0.41 0.32 16 37 H 0.07 0.97 6.97 -51.93 -0.36 0.61 16 38 H 0.12 1.32 7.98 -52.48 -0.42 0.90 16 39 H 0.12 1.29 6.29 -52.48 -0.33 0.96 16 40 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 41 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.13 2.14 7.97 -52.49 -0.42 1.72 16 44 H 0.08 1.57 5.28 -51.93 -0.27 1.29 16 45 H 0.04 0.70 6.82 -51.93 -0.35 0.34 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -28.30 340.43 -9.30 -37.60 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.02 Total: 1.54 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.07 Total: -19.57 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.12 Total: -35.97 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.20 Total: -4.73 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.30 -9.30 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.000 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds