Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.08989 * 109.47200 * 177.34715 * 3 2 1 5 5 C 1.50705 * 109.46861 * 297.34916 * 3 2 1 6 6 H 1.07996 * 119.99647 * 120.00158 * 5 3 2 7 7 C 1.37873 * 119.99749 * 299.72162 * 5 3 2 8 8 N 1.31506 * 120.00224 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99728 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47132 * 60.00361 * 9 7 5 11 11 H 1.48499 * 109.47250 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47674 * 300.00516 * 9 7 5 13 13 N 1.46898 * 109.47000 * 57.34581 * 3 2 1 14 14 C 1.45526 * 111.00236 * 186.44173 * 13 3 2 15 15 C 1.51504 * 114.60467 * 165.48502 * 14 13 3 16 16 C 1.53256 * 110.73236 * 67.78093 * 15 14 13 17 17 C 1.51437 * 108.15567 * 275.48394 * 16 15 14 18 18 C 1.38317 * 119.79224 * 249.27261 * 17 16 15 19 19 C 1.38215 * 119.68248 * 179.81421 * 18 17 16 20 20 C 1.38756 * 119.99707 * 0.02562 * 19 18 17 21 21 O 1.35902 * 120.01549 * 180.02562 * 20 19 18 22 22 C 1.42900 * 117.00099 * 0.02562 * 21 20 19 23 23 C 1.38790 * 119.96765 * 0.02575 * 20 19 18 24 24 C 1.37317 * 119.75220 * 69.14678 * 17 16 15 25 25 C 1.46917 * 111.00023 * 60.28329 * 13 3 2 26 26 H 1.08999 * 109.47048 * 305.22950 * 1 2 3 27 27 H 1.08996 * 109.46932 * 65.23258 * 1 2 3 28 28 H 1.09003 * 109.46558 * 185.23610 * 1 2 3 29 29 H 1.08998 * 109.46878 * 239.99522 * 2 1 3 30 30 H 1.08996 * 109.46720 * 119.99686 * 2 1 3 31 31 H 0.97005 * 119.99902 * 180.02562 * 8 7 5 32 32 H 1.08998 * 108.45821 * 286.81972 * 14 13 3 33 33 H 1.09001 * 108.45278 * 44.15933 * 14 13 3 34 34 H 1.09000 * 109.22550 * 307.46170 * 15 14 13 35 35 H 1.09002 * 109.22736 * 188.10633 * 15 14 13 36 36 H 1.08998 * 109.72169 * 155.81721 * 16 15 14 37 37 H 1.09002 * 109.72144 * 35.14602 * 16 15 14 38 38 H 1.08011 * 120.15809 * 359.79258 * 18 17 16 39 39 H 1.08009 * 120.00322 * 180.02562 * 19 18 17 40 40 H 1.08994 * 109.47390 * 300.00047 * 22 21 20 41 41 H 1.09004 * 109.47087 * 59.99697 * 22 21 20 42 42 H 1.09001 * 109.47010 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.20596 * 180.02562 * 23 20 19 44 44 H 1.09003 * 109.61976 * 331.53915 * 25 13 3 45 45 H 1.09003 * 109.61985 * 91.90949 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1289 1.4429 0.0476 5 6 1.5921 2.1337 -1.2621 6 1 0.9677 3.0129 -1.2036 7 6 1.9840 1.6468 -2.4910 8 7 2.7484 0.5790 -2.5619 9 14 1.4281 2.5030 -4.0553 10 1 1.9169 3.9053 -4.0525 11 1 1.9814 1.7889 -5.2339 12 1 -0.0553 2.4961 -4.1232 13 7 1.4987 2.1532 1.1661 14 6 1.8387 3.5674 1.1190 15 6 1.0490 4.4382 2.0748 16 6 1.4194 4.1229 3.5281 17 6 0.5892 2.9400 3.9807 18 6 -0.4057 3.1196 4.9247 19 6 -1.1646 2.0392 5.3333 20 6 -0.9265 0.7817 4.7972 21 8 -1.6729 -0.2808 5.1983 22 6 -2.6859 -0.0305 6.1746 23 6 0.0743 0.6096 3.8511 24 6 0.8277 1.6967 3.4488 25 6 1.9213 1.5100 2.4175 26 1 -0.3633 0.5928 0.8394 27 1 -0.3633 0.4305 -0.9331 28 1 -0.3632 -1.0234 0.0938 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0244 0.2367 -3.4265 32 1 2.8986 3.6754 1.3492 33 1 1.6713 3.9289 0.1044 34 1 -0.0159 4.2574 1.9286 35 1 1.2661 5.4862 1.8683 36 1 1.2043 4.9859 4.1581 37 1 2.4789 3.8747 3.5921 38 1 -0.5883 4.0995 5.3409 39 1 -1.9431 2.1736 6.0699 40 1 -2.2272 0.3641 7.0812 41 1 -3.3975 0.6958 5.7818 42 1 -3.2060 -0.9602 6.4051 43 1 0.2627 -0.3673 3.4310 44 1 2.0844 0.4461 2.2454 45 1 2.8443 1.9693 2.7716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = -24.347565 kcal Electronic energy + Delta-G solvation = -24151.243486 eV Core-core repulsion = 20940.176308 eV Total energy + Delta-G solvation = -3211.067177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35042 -39.86504 -38.08269 -35.73116 -34.28823 -32.79595 -32.16591 -30.90722 -28.69023 -28.05981 -26.57942 -25.79627 -24.68656 -23.28230 -21.85519 -21.18742 -20.55978 -18.69057 -18.04199 -17.62283 -16.91367 -16.55735 -16.44546 -15.89066 -15.74934 -15.57034 -14.93172 -14.80931 -14.50558 -14.19332 -14.02588 -13.85140 -13.72352 -13.58711 -13.08375 -12.89986 -12.78599 -12.66401 -12.54986 -12.36428 -12.20345 -11.84150 -11.80385 -11.64395 -11.55310 -11.40044 -11.38269 -11.11918 -10.73692 -10.42186 -9.68666 -8.89000 -8.78084 -8.06128 -6.15778 0.47476 0.58346 1.43326 1.44818 1.51680 2.43129 2.46756 2.83203 3.22093 3.46228 3.89974 3.94629 4.07009 4.19874 4.22348 4.25595 4.40435 4.42582 4.44589 4.55339 4.63463 4.65793 4.70644 4.76475 4.78536 4.87660 4.93649 4.94522 5.02136 5.08996 5.21513 5.27989 5.32248 5.42414 5.45030 5.49611 5.52996 5.59136 5.75264 5.78396 5.87636 5.91438 5.97401 6.33523 6.51125 6.57060 6.83317 6.98922 7.51582 8.99266 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.004859 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.376602 B = 5761.545845 C = 6495.280277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.105 4.105 3 C 0.228 3.772 4 H -0.043 1.043 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.531 5.531 14 C 0.063 3.937 15 C -0.101 4.101 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.077 4.077 19 C -0.209 4.209 20 C 0.110 3.890 21 O -0.342 6.342 22 C 0.020 3.980 23 C -0.159 4.159 24 C -0.029 4.029 25 C 0.091 3.909 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.259 0.741 32 H 0.005 0.995 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.069 0.931 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 4.642 17.584 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.143 4.143 3 C 0.122 3.878 4 H -0.025 1.025 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.255 5.255 14 C -0.066 4.066 15 C -0.139 4.139 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.095 4.095 19 C -0.228 4.228 20 C 0.065 3.935 21 O -0.256 6.256 22 C -0.074 4.074 23 C -0.178 4.178 24 C -0.030 4.030 25 C -0.036 4.036 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.121 4.305 17.349 19.634 hybrid contribution 0.864 0.039 -1.175 1.459 sum -7.257 4.343 16.175 18.252 Atomic orbital electron populations 1.21282 0.95963 0.98329 1.00659 1.21456 0.96160 0.97585 0.99096 1.18993 0.89913 0.91557 0.87369 1.02524 1.21268 1.30543 1.11831 0.90673 0.92274 1.25592 0.95315 0.95677 1.01714 1.70005 1.36851 1.23814 1.25236 0.85716 0.78577 0.78736 0.79232 1.19677 1.21276 1.19953 1.60784 1.61535 1.02166 1.01011 1.21493 0.95765 0.88647 1.00663 1.21309 1.00124 0.98886 0.93615 1.20782 0.98237 0.95602 0.96047 1.19798 0.99279 0.94400 0.98457 1.21141 0.93556 0.99324 0.95472 1.21437 1.04521 0.91689 1.05136 1.19082 0.92167 0.87260 0.95015 1.86041 1.47595 1.33256 1.58704 1.23310 0.89206 1.04632 0.90288 1.20341 0.97775 0.99495 1.00199 1.19426 0.96064 0.92827 0.94704 1.21202 0.93701 0.99613 0.89113 0.92975 0.95029 0.94817 0.91852 0.95530 0.93140 0.97691 0.91634 0.92480 0.89648 0.88479 0.91908 0.82917 0.83023 0.91434 0.91919 0.86649 0.86745 0.91299 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.79 9.50 71.98 0.68 -4.10 16 2 C -0.10 -5.16 5.20 30.60 0.16 -5.00 16 3 C 0.23 11.61 1.77 44.17 0.08 11.69 16 4 H -0.04 -2.46 8.14 -2.39 -0.02 -2.47 16 5 C -0.50 -27.35 6.67 25.60 0.17 -27.18 16 6 H 0.06 3.20 6.32 -2.91 -0.02 3.18 16 7 C 0.02 0.86 5.30 84.65 0.45 1.30 16 8 N -0.92 -52.99 11.32 21.44 0.24 -52.75 16 9 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.53 -22.74 3.24 -885.02 -2.87 -25.61 16 14 C 0.06 2.44 4.72 86.07 0.41 2.84 16 15 C -0.10 -3.02 5.79 30.19 0.17 -2.84 16 16 C -0.07 -1.77 5.50 30.17 0.17 -1.61 16 17 C -0.12 -3.39 5.00 -19.83 -0.10 -3.49 16 18 C -0.08 -1.80 9.69 22.28 0.22 -1.58 16 19 C -0.21 -4.88 9.04 22.39 0.20 -4.68 16 20 C 0.11 3.16 6.69 22.53 0.15 3.31 16 21 O -0.34 -9.08 10.50 -92.45 -0.97 -10.05 16 22 C 0.02 0.31 9.81 113.37 1.11 1.42 16 23 C -0.16 -5.30 9.63 22.40 0.22 -5.08 16 24 C -0.03 -0.99 5.41 -19.83 -0.11 -1.09 16 25 C 0.09 3.47 4.97 85.80 0.43 3.90 16 26 H 0.05 2.33 7.36 -2.39 -0.02 2.32 16 27 H 0.03 1.53 7.48 -2.39 -0.02 1.52 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.06 3.50 6.03 -2.39 -0.01 3.49 16 30 H 0.03 1.21 6.09 -2.39 -0.01 1.20 16 31 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 32 H 0.00 0.19 7.73 -2.39 -0.02 0.18 16 33 H 0.07 2.86 5.52 -2.39 -0.01 2.85 16 34 H 0.06 1.84 7.86 -2.39 -0.02 1.82 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 1.83 7.93 -2.39 -0.02 1.81 16 37 H 0.06 1.68 6.97 -2.39 -0.02 1.66 16 38 H 0.15 2.51 7.98 -2.91 -0.02 2.49 16 39 H 0.15 2.51 6.29 -2.91 -0.02 2.49 16 40 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 41 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 42 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 3.97 7.97 -2.91 -0.02 3.95 16 44 H 0.07 2.75 5.28 -2.39 -0.01 2.74 16 45 H 0.04 1.51 6.82 -2.39 -0.02 1.50 16 Total: -1.00 -63.38 340.43 3.81 -59.58 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.97 Total: 15.19 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.40 Total: -32.19 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.63 Total: -78.36 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.97 Total: -10.05 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -63.38 3.81 -59.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.230 kcal (2) G-P(sol) polarization free energy of solvation -63.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds