Wall clock time and date at job start Tue Mar 31 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46947 * 2 1 4 4 H 1.09004 * 109.47082 * 305.65101 * 3 2 1 5 5 C 1.50701 * 109.46934 * 185.65566 * 3 2 1 6 6 H 1.07998 * 119.99993 * 239.99703 * 5 3 2 7 7 C 1.37870 * 120.00000 * 60.00285 * 5 3 2 8 8 N 1.31515 * 120.00228 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00067 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46823 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47248 * 119.99568 * 9 7 5 12 12 H 1.48500 * 109.46838 * 239.99645 * 9 7 5 13 13 N 1.46903 * 109.47116 * 65.65363 * 3 2 1 14 14 C 1.46897 * 110.99896 * 208.25841 * 13 3 2 15 15 H 1.09000 * 109.54178 * 33.44523 * 14 13 3 16 16 C 1.53180 * 109.54396 * 273.26966 * 14 13 3 17 17 C 1.53093 * 109.16221 * 183.06310 * 16 14 13 18 18 O 1.42909 * 109.41522 * 57.60828 * 17 16 14 19 19 C 1.42908 * 114.09582 * 298.84120 * 18 17 16 20 20 H 1.08998 * 109.48306 * 301.16317 * 19 18 17 21 21 C 1.50705 * 109.47750 * 181.14021 * 19 18 17 22 22 C 1.38235 * 119.99672 * 324.72230 * 21 19 18 23 23 C 1.38237 * 119.99670 * 180.32360 * 22 21 19 24 24 C 1.38237 * 120.00020 * 359.93276 * 23 22 21 25 25 C 1.38239 * 119.99743 * 0.06693 * 24 23 22 26 26 C 1.38225 * 120.00367 * 359.95728 * 25 24 23 27 27 C 1.53089 * 109.41525 * 61.15798 * 19 18 17 28 28 H 1.08997 * 109.47520 * 53.85675 * 1 2 3 29 29 H 1.09004 * 109.47350 * 173.86058 * 1 2 3 30 30 H 1.09006 * 109.46888 * 293.85455 * 1 2 3 31 31 H 1.09003 * 109.46861 * 240.00013 * 2 1 3 32 32 H 1.09000 * 109.47510 * 119.99765 * 2 1 3 33 33 H 0.97005 * 120.00189 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99672 * 332.21536 * 13 3 2 35 35 H 1.08995 * 109.52283 * 63.15919 * 16 14 13 36 36 H 1.09001 * 109.51940 * 302.96648 * 16 14 13 37 37 H 1.08998 * 109.48543 * 297.62587 * 17 16 14 38 38 H 1.09003 * 109.48084 * 177.59001 * 17 16 14 39 39 H 1.07991 * 120.00817 * 0.27999 * 22 21 19 40 40 H 1.07994 * 120.00453 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00070 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.99717 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.00586 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.52451 * 62.29616 * 27 19 18 45 45 H 1.08995 * 109.52579 * 182.48249 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5404 1.4448 -0.1400 6 1 4.1541 1.8865 0.6312 7 6 4.1298 0.8832 -1.2527 8 7 3.3826 0.3451 -2.1917 9 14 5.9898 0.8854 -1.4260 10 1 6.5964 1.5461 -0.2423 11 1 6.4801 -0.5132 -1.5181 12 1 6.3715 1.6258 -2.6554 13 7 1.6648 2.0945 1.2618 14 6 1.5088 3.5438 1.0795 15 1 1.1223 3.7460 0.0806 16 6 2.8668 4.2311 1.2523 17 6 2.6813 5.7464 1.1366 18 8 1.7404 6.1862 2.1181 19 6 0.4391 5.6125 1.9772 20 1 0.0387 5.8567 0.9933 21 6 -0.4722 6.1660 3.0422 22 6 0.0263 6.4474 4.3005 23 6 -0.8110 6.9488 5.2794 24 6 -2.1466 7.1703 4.9996 25 6 -2.6450 6.8889 3.7412 26 6 -1.8078 6.3870 2.7625 27 6 0.5344 4.0919 2.1267 28 1 -0.3634 0.6061 -0.8298 29 1 -0.3634 -1.0218 -0.1099 30 1 -0.3633 0.4156 0.9399 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7973 -0.0504 -2.9744 34 1 0.8255 1.6857 1.6445 35 1 3.5504 3.8875 0.4760 36 1 3.2758 3.9881 2.2330 37 1 2.3104 5.9923 0.1416 38 1 3.6375 6.2432 1.3013 39 1 1.0697 6.2748 4.5190 40 1 -0.4218 7.1683 6.2625 41 1 -2.8007 7.5625 5.7642 42 1 -3.6885 7.0615 3.5228 43 1 -2.1970 6.1676 1.7794 44 1 0.8964 3.8459 3.1250 45 1 -0.4498 3.6486 1.9757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256791954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:30 Heat of formation + Delta-G solvation = -32.660537 kcal Electronic energy + Delta-G solvation = -23405.438404 eV Core-core repulsion = 20194.010749 eV Total energy + Delta-G solvation = -3211.427655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91536 -38.43644 -36.32334 -33.39050 -32.66683 -31.68746 -30.93195 -29.44651 -29.01199 -26.44815 -23.99599 -23.45790 -22.68033 -22.38490 -20.93612 -19.68476 -19.43560 -17.09289 -16.31311 -16.00532 -15.72005 -15.14077 -14.88500 -14.59672 -14.35712 -14.14061 -13.94709 -13.44667 -13.38267 -13.14355 -12.72921 -12.67714 -12.37063 -12.06453 -11.72446 -11.40094 -11.18631 -11.13095 -11.07388 -10.88681 -10.82174 -10.66527 -10.27678 -10.17310 -9.83975 -9.64998 -9.62726 -9.31825 -9.02291 -8.95494 -8.65326 -8.34396 -7.26033 -5.97274 -4.00602 1.27445 1.37123 3.30153 3.38745 3.43301 3.67700 3.96523 4.43633 4.74078 4.86859 4.92359 5.04852 5.08762 5.23514 5.29094 5.32012 5.44533 5.46417 5.58326 5.61947 5.74672 5.78400 5.93706 6.00723 6.07103 6.12314 6.14100 6.14947 6.32505 6.38639 6.39298 6.44445 6.49064 6.55493 6.78625 6.82415 6.94695 6.97739 7.06575 7.18311 7.46810 7.49112 7.77197 7.92862 8.31788 8.40179 8.75205 9.07445 9.64024 11.08088 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.003875 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.634476 B = 7223.373748 C = 8021.026655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.488 4.488 6 H 0.065 0.935 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.681 5.681 14 C 0.100 3.900 15 H 0.035 0.965 16 C -0.142 4.142 17 C 0.061 3.939 18 O -0.380 6.380 19 C 0.135 3.865 20 H 0.063 0.937 21 C -0.073 4.073 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.144 4.144 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.258 0.742 34 H 0.318 0.682 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.643 11.439 9.685 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.010 4.010 15 H 0.053 0.947 16 C -0.180 4.180 17 C -0.016 4.016 18 O -0.300 6.300 19 C 0.077 3.923 20 H 0.081 0.919 21 C -0.073 4.073 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.183 4.183 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.918 11.506 9.870 17.588 hybrid contribution 0.065 -0.312 -0.952 1.004 sum -8.853 11.194 8.918 16.829 Atomic orbital electron populations 1.21879 0.99657 0.99716 0.99450 1.21803 0.91191 1.00561 1.03086 1.19259 0.95611 0.89879 0.84120 0.97997 1.21295 0.91248 1.36087 1.04088 0.91708 1.24974 0.97955 0.95746 0.95993 1.69883 1.34531 1.39645 1.09613 0.86541 0.85993 0.77636 0.77851 1.19731 1.21189 1.21290 1.60741 1.37955 1.00805 1.31722 1.21375 0.93936 0.90323 0.95408 0.94738 1.22281 0.98829 0.92720 1.04201 1.22709 0.92154 0.95725 0.91000 1.87856 1.19964 1.67811 1.54333 1.20779 0.83384 0.92298 0.95845 0.91950 1.19698 0.93660 0.99126 0.94843 1.21060 1.00235 0.97371 0.92311 1.21178 0.93850 0.99937 0.99290 1.21138 0.95682 1.00596 0.96855 1.21056 0.99545 0.99989 0.93542 1.20959 0.92992 0.99524 0.99615 1.22427 0.99949 0.94245 1.01643 0.93949 0.94391 0.94697 0.88228 0.94077 0.93199 0.86385 0.88733 0.91204 0.93591 0.89030 0.85350 0.86155 0.86346 0.86142 0.86072 0.90418 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.65 37.16 0.36 -2.50 16 2 C -0.13 -2.97 5.34 -26.73 -0.14 -3.11 16 3 C 0.22 5.28 2.03 -68.86 -0.14 5.14 16 4 H 0.00 0.07 7.35 -51.93 -0.38 -0.32 16 5 C -0.49 -12.99 7.41 -34.44 -0.26 -13.24 16 6 H 0.06 1.75 6.97 -52.49 -0.37 1.39 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.10 11.29 55.43 0.63 -24.47 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.68 -14.04 6.17 -100.76 -0.62 -14.67 16 14 C 0.10 1.83 2.58 -67.53 -0.17 1.65 16 15 H 0.03 0.68 7.37 -51.93 -0.38 0.30 16 16 C -0.14 -2.55 5.20 -26.59 -0.14 -2.69 16 17 C 0.06 0.92 6.84 37.21 0.25 1.17 16 18 O -0.38 -5.84 9.56 -35.23 -0.34 -6.18 16 19 C 0.14 1.92 2.85 -27.83 -0.08 1.84 16 20 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 21 C -0.07 -0.96 5.00 -104.62 -0.52 -1.48 16 22 C -0.09 -1.16 9.35 -39.58 -0.37 -1.53 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 26 C -0.11 -1.30 9.68 -39.59 -0.38 -1.68 16 27 C -0.14 -2.20 4.66 -26.59 -0.12 -2.32 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.60 6.68 -51.93 -0.35 0.25 16 31 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.32 6.08 6.20 -39.29 -0.24 5.84 16 35 H 0.09 1.94 6.33 -51.93 -0.33 1.61 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.13 1.64 7.63 -52.49 -0.40 1.24 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -28.19 352.11 -10.44 -38.63 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.39 Total: 7.68 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -3.00 Total: -22.41 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.00 Total: -39.14 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.34 Total: -6.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.19 -10.44 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.966 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds