Wall clock time and date at job start Tue Mar 31 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47469 * 2 1 4 4 H 1.09001 * 109.46994 * 306.15234 * 3 2 1 5 5 C 1.50705 * 109.47279 * 186.15226 * 3 2 1 6 6 H 1.08001 * 119.99746 * 244.74628 * 5 3 2 7 7 C 1.37875 * 120.00168 * 64.74017 * 5 3 2 8 8 N 1.31507 * 120.00126 * 195.21625 * 7 5 3 9 9 Si 1.86806 * 119.99689 * 15.22223 * 7 5 3 10 10 H 1.48495 * 109.47053 * 92.20077 * 9 7 5 11 11 H 1.48501 * 109.46657 * 212.20042 * 9 7 5 12 12 H 1.48504 * 109.47091 * 332.19618 * 9 7 5 13 13 N 1.46906 * 109.47148 * 66.14961 * 3 2 1 14 14 C 1.46893 * 110.99792 * 202.79740 * 13 3 2 15 15 H 1.08997 * 109.54940 * 326.21955 * 14 13 3 16 16 C 1.53183 * 109.54596 * 86.39551 * 14 13 3 17 17 C 1.53086 * 109.16368 * 176.84505 * 16 14 13 18 18 O 1.42897 * 109.41775 * 302.38945 * 17 16 14 19 19 C 1.42902 * 114.09882 * 61.16000 * 18 17 16 20 20 H 1.09005 * 109.47949 * 58.83802 * 19 18 17 21 21 C 1.50698 * 109.48347 * 178.85945 * 19 18 17 22 22 C 1.38229 * 119.99862 * 39.72698 * 21 19 18 23 23 C 1.38244 * 119.99861 * 179.74282 * 22 21 19 24 24 C 1.38238 * 119.99602 * 0.55101 * 23 22 21 25 25 C 1.38234 * 120.00218 * 359.70657 * 24 23 22 26 26 C 1.38234 * 119.99705 * 0.02562 * 25 24 23 27 27 C 1.53090 * 109.41617 * 298.84552 * 19 18 17 28 28 H 1.09000 * 109.47184 * 173.91651 * 1 2 3 29 29 H 1.09000 * 109.46944 * 53.91478 * 1 2 3 30 30 H 1.09005 * 109.47252 * 293.91550 * 1 2 3 31 31 H 1.09009 * 109.47012 * 119.99999 * 2 1 3 32 32 H 1.09002 * 109.47503 * 239.99570 * 2 1 3 33 33 H 0.97000 * 120.00248 * 179.97438 * 8 7 5 34 34 H 1.00898 * 111.00043 * 326.75180 * 13 3 2 35 35 H 1.09001 * 109.51718 * 296.75291 * 16 14 13 36 36 H 1.09004 * 109.51627 * 56.87540 * 16 14 13 37 37 H 1.08998 * 109.48360 * 62.37893 * 17 16 14 38 38 H 1.09009 * 109.48013 * 182.40971 * 17 16 14 39 39 H 1.07993 * 120.00129 * 0.02562 * 22 21 19 40 40 H 1.07995 * 119.99885 * 180.27210 * 23 22 21 41 41 H 1.07997 * 119.99593 * 179.72203 * 24 23 22 42 42 H 1.07997 * 119.99698 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.99329 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.52137 * 297.70180 * 27 19 18 45 45 H 1.08996 * 109.52332 * 177.51120 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5896 1.9871 -0.8298 5 6 3.5394 1.4451 -0.1523 6 1 4.1628 1.8146 0.6485 7 6 4.1152 0.9757 -1.3138 8 7 5.3997 0.6954 -1.3442 9 14 3.0707 0.7381 -2.8442 10 1 3.1147 1.9716 -3.6699 11 1 3.5998 -0.4041 -3.6320 12 1 1.6675 0.4578 -2.4472 13 7 1.6753 2.0908 1.2668 14 6 1.6445 3.5521 1.1204 15 1 2.4086 3.8635 0.4082 16 6 0.2654 3.9875 0.6151 17 6 0.2170 5.5158 0.5409 18 8 0.5020 6.0634 1.8296 19 6 1.7971 5.7287 2.3324 20 1 2.5593 6.0845 1.6391 21 6 1.9979 6.3791 3.6769 22 6 0.9554 6.4285 4.5833 23 6 1.1411 7.0205 5.8187 24 6 2.3660 7.5731 6.1431 25 6 3.4069 7.5284 5.2346 26 6 3.2228 6.9315 4.0015 27 6 1.9092 4.2089 2.4786 28 1 -0.3633 -1.0219 -0.1089 29 1 -0.3633 0.6053 -0.8305 30 1 -0.3634 0.4166 0.9395 31 1 1.8933 -0.5139 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 5.8048 0.3648 -2.1613 34 1 0.7925 1.7431 1.6099 35 1 0.0919 3.5689 -0.3762 36 1 -0.5030 3.6306 1.3009 37 1 0.9584 5.8686 -0.1760 38 1 -0.7762 5.8330 0.2227 39 1 -0.0027 6.0007 4.3281 40 1 0.3280 7.0552 6.5285 41 1 2.5097 8.0395 7.1065 42 1 4.3639 7.9597 5.4883 43 1 4.0359 6.8970 3.2915 44 1 1.1739 3.8575 3.2026 45 1 2.9111 3.9487 2.8200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256791955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:32 Heat of formation + Delta-G solvation = -28.564433 kcal Electronic energy + Delta-G solvation = -23453.244963 eV Core-core repulsion = 20241.994929 eV Total energy + Delta-G solvation = -3211.250034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94568 -38.50746 -36.57117 -33.48876 -32.71286 -31.95240 -30.88558 -29.69129 -29.04972 -26.92204 -24.14114 -23.37782 -22.61303 -22.35124 -20.99090 -19.95615 -19.58423 -17.08446 -16.76788 -16.10863 -15.87179 -15.15747 -15.01062 -14.72348 -14.31432 -14.05237 -13.91279 -13.68025 -13.39121 -13.32660 -12.82342 -12.67019 -12.48400 -12.41617 -11.96580 -11.75352 -11.44983 -11.17819 -11.02561 -10.96460 -10.84213 -10.69211 -10.61569 -10.29901 -9.99950 -9.94581 -9.57940 -9.48522 -9.15703 -8.90209 -8.64700 -8.48610 -7.35318 -6.08032 -4.00427 1.32586 1.42359 3.24759 3.34919 3.36777 3.67841 3.95397 4.41161 4.72856 4.90075 4.94448 5.02847 5.09285 5.13963 5.20622 5.22613 5.29998 5.41002 5.53061 5.58374 5.63324 5.74483 5.80574 5.86051 5.88510 5.97082 6.01685 6.02622 6.08026 6.13563 6.23671 6.45678 6.49898 6.50578 6.52580 6.59453 6.64980 6.68915 6.77756 6.96202 6.99842 7.22764 7.36212 7.76707 7.98767 8.25512 8.75720 9.08359 9.58783 11.05336 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020903 B = 0.004054 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.213926 B = 6904.635443 C = 7367.552832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.128 4.128 3 C 0.195 3.805 4 H -0.005 1.005 5 C -0.502 4.502 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.668 5.668 14 C 0.094 3.906 15 H 0.087 0.913 16 C -0.186 4.186 17 C 0.068 3.932 18 O -0.379 6.379 19 C 0.130 3.870 20 H 0.067 0.933 21 C -0.071 4.071 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.125 4.125 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.262 0.738 34 H 0.319 0.681 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 11.456 9.262 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C 0.086 3.914 4 H 0.012 0.988 5 C -0.540 4.540 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.297 5.297 14 C -0.017 4.017 15 H 0.105 0.895 16 C -0.225 4.225 17 C -0.010 4.010 18 O -0.299 6.299 19 C 0.072 3.928 20 H 0.085 0.915 21 C -0.071 4.071 22 C -0.111 4.111 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.164 4.164 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.342 11.447 9.488 17.559 hybrid contribution -1.074 -0.322 -1.703 2.039 sum -10.417 11.125 7.785 17.114 Atomic orbital electron populations 1.21916 0.98638 1.00354 1.00359 1.22088 0.92395 1.00123 1.01990 1.19538 0.96618 0.89494 0.85733 0.98781 1.20985 0.89244 1.41604 1.02199 0.90342 1.24906 0.94691 0.94772 0.98574 1.69970 1.11486 1.44081 1.27594 0.87298 0.82233 0.77853 0.84178 1.20871 1.21412 1.17849 1.60547 1.35044 1.02386 1.31770 1.21510 0.94742 0.89598 0.95874 0.89515 1.23001 1.00337 0.96784 1.02397 1.22486 1.00898 0.92909 0.84660 1.87867 1.33755 1.73889 1.34362 1.20938 0.85647 0.94446 0.91797 0.91529 1.19642 0.94134 0.98353 0.95017 1.21004 0.98906 0.98307 0.92900 1.21148 0.97401 0.99070 0.96783 1.21132 0.93555 1.00147 0.99382 1.21078 0.98993 1.00027 0.93948 1.21024 0.96807 0.97646 0.97251 1.22151 1.03473 0.92342 0.98416 0.93801 0.93834 0.93465 0.91841 0.92216 0.92805 0.86284 0.91132 0.91510 0.93092 0.89301 0.85689 0.86259 0.86371 0.86067 0.85805 0.91565 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.63 37.16 0.36 -2.26 16 2 C -0.13 -2.68 4.78 -26.74 -0.13 -2.81 16 3 C 0.19 4.39 1.40 -68.86 -0.10 4.29 16 4 H -0.01 -0.12 5.91 -51.93 -0.31 -0.43 16 5 C -0.50 -13.79 8.82 -34.44 -0.30 -14.09 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.04 5.33 -17.82 -0.09 1.95 16 8 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 9 Si 0.86 20.78 25.78 -169.99 -4.38 16.40 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.25 -5.76 5.50 56.52 0.31 -5.45 16 13 N -0.67 -13.12 6.05 -100.76 -0.61 -13.73 16 14 C 0.09 1.64 2.36 -67.53 -0.16 1.48 16 15 H 0.09 1.74 7.55 -51.93 -0.39 1.35 16 16 C -0.19 -2.73 5.39 -26.59 -0.14 -2.88 16 17 C 0.07 0.90 6.84 37.20 0.25 1.15 16 18 O -0.38 -5.48 9.72 -35.23 -0.34 -5.82 16 19 C 0.13 1.85 2.85 -27.84 -0.08 1.77 16 20 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 21 C -0.07 -0.96 4.97 -104.63 -0.52 -1.48 16 22 C -0.09 -1.18 9.36 -39.58 -0.37 -1.55 16 23 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.11 -1.35 9.67 -39.58 -0.38 -1.73 16 27 C -0.13 -1.97 5.01 -26.59 -0.13 -2.11 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.71 6.69 -51.93 -0.35 0.37 16 31 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.06 1.34 4.99 -51.93 -0.26 1.08 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.32 5.64 6.34 -39.29 -0.25 5.39 16 35 H 0.07 1.08 7.56 -51.93 -0.39 0.68 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.13 1.54 7.77 -52.49 -0.41 1.14 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.39 8.04 -52.48 -0.42 0.97 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -29.97 350.22 -9.76 -39.73 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.49 Total: 7.79 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.99 Total: -23.45 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.16 Total: -39.93 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.34 Total: -5.82 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.38 Total: 16.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.97 -9.76 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.167 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds