Wall clock time and date at job start Tue Mar 31 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47469 * 2 1 4 4 H 1.09001 * 109.46994 * 306.15234 * 3 2 1 5 5 C 1.50705 * 109.47279 * 186.15226 * 3 2 1 6 6 H 1.08001 * 119.99746 * 244.74628 * 5 3 2 7 7 C 1.37875 * 120.00168 * 64.74017 * 5 3 2 8 8 N 1.31507 * 120.00126 * 195.21625 * 7 5 3 9 9 Si 1.86806 * 119.99689 * 15.22223 * 7 5 3 10 10 H 1.48495 * 109.47053 * 92.20077 * 9 7 5 11 11 H 1.48501 * 109.46657 * 212.20042 * 9 7 5 12 12 H 1.48504 * 109.47091 * 332.19618 * 9 7 5 13 13 N 1.46906 * 109.47148 * 66.14961 * 3 2 1 14 14 C 1.46893 * 110.99792 * 202.79740 * 13 3 2 15 15 H 1.08997 * 109.54940 * 326.21955 * 14 13 3 16 16 C 1.53183 * 109.54596 * 86.39551 * 14 13 3 17 17 C 1.53086 * 109.16368 * 176.84505 * 16 14 13 18 18 O 1.42897 * 109.41775 * 302.38945 * 17 16 14 19 19 C 1.42902 * 114.09882 * 61.16000 * 18 17 16 20 20 H 1.09005 * 109.47949 * 58.83802 * 19 18 17 21 21 C 1.50698 * 109.48347 * 178.85945 * 19 18 17 22 22 C 1.38229 * 119.99862 * 39.72698 * 21 19 18 23 23 C 1.38244 * 119.99861 * 179.74282 * 22 21 19 24 24 C 1.38238 * 119.99602 * 0.55101 * 23 22 21 25 25 C 1.38234 * 120.00218 * 359.70657 * 24 23 22 26 26 C 1.38234 * 119.99705 * 0.02562 * 25 24 23 27 27 C 1.53090 * 109.41617 * 298.84552 * 19 18 17 28 28 H 1.09000 * 109.47184 * 173.91651 * 1 2 3 29 29 H 1.09000 * 109.46944 * 53.91478 * 1 2 3 30 30 H 1.09005 * 109.47252 * 293.91550 * 1 2 3 31 31 H 1.09009 * 109.47012 * 119.99999 * 2 1 3 32 32 H 1.09002 * 109.47503 * 239.99570 * 2 1 3 33 33 H 0.97000 * 120.00248 * 179.97438 * 8 7 5 34 34 H 1.00898 * 111.00043 * 326.75180 * 13 3 2 35 35 H 1.09001 * 109.51718 * 296.75291 * 16 14 13 36 36 H 1.09004 * 109.51627 * 56.87540 * 16 14 13 37 37 H 1.08998 * 109.48360 * 62.37893 * 17 16 14 38 38 H 1.09009 * 109.48013 * 182.40971 * 17 16 14 39 39 H 1.07993 * 120.00129 * 0.02562 * 22 21 19 40 40 H 1.07995 * 119.99885 * 180.27210 * 23 22 21 41 41 H 1.07997 * 119.99593 * 179.72203 * 24 23 22 42 42 H 1.07997 * 119.99698 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.99329 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.52137 * 297.70180 * 27 19 18 45 45 H 1.08996 * 109.52332 * 177.51120 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5896 1.9871 -0.8298 5 6 3.5394 1.4451 -0.1523 6 1 4.1628 1.8146 0.6485 7 6 4.1152 0.9757 -1.3138 8 7 5.3997 0.6954 -1.3442 9 14 3.0707 0.7381 -2.8442 10 1 3.1147 1.9716 -3.6699 11 1 3.5998 -0.4041 -3.6320 12 1 1.6675 0.4578 -2.4472 13 7 1.6753 2.0908 1.2668 14 6 1.6445 3.5521 1.1204 15 1 2.4086 3.8635 0.4082 16 6 0.2654 3.9875 0.6151 17 6 0.2170 5.5158 0.5409 18 8 0.5020 6.0634 1.8296 19 6 1.7971 5.7287 2.3324 20 1 2.5593 6.0845 1.6391 21 6 1.9979 6.3791 3.6769 22 6 0.9554 6.4285 4.5833 23 6 1.1411 7.0205 5.8187 24 6 2.3660 7.5731 6.1431 25 6 3.4069 7.5284 5.2346 26 6 3.2228 6.9315 4.0015 27 6 1.9092 4.2089 2.4786 28 1 -0.3633 -1.0219 -0.1089 29 1 -0.3633 0.6053 -0.8305 30 1 -0.3634 0.4166 0.9395 31 1 1.8933 -0.5139 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 5.8048 0.3648 -2.1613 34 1 0.7925 1.7431 1.6099 35 1 0.0919 3.5689 -0.3762 36 1 -0.5030 3.6306 1.3009 37 1 0.9584 5.8686 -0.1760 38 1 -0.7762 5.8330 0.2227 39 1 -0.0027 6.0007 4.3281 40 1 0.3280 7.0552 6.5285 41 1 2.5097 8.0395 7.1065 42 1 4.3639 7.9597 5.4883 43 1 4.0359 6.8970 3.2915 44 1 1.1739 3.8575 3.2026 45 1 2.9111 3.9487 2.8200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256791955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:32 Heat of formation + Delta-G solvation = -46.903057 kcal Electronic energy + Delta-G solvation = -23454.040186 eV Core-core repulsion = 20241.994929 eV Total energy + Delta-G solvation = -3212.045257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05986 -39.56045 -38.11497 -35.08140 -33.96987 -33.70104 -31.76346 -31.07107 -30.17804 -28.77532 -25.39008 -24.65259 -24.05486 -23.40036 -22.05141 -21.58410 -21.02861 -18.84533 -18.06313 -17.23543 -16.96186 -16.78939 -16.26381 -16.08683 -15.69897 -15.28030 -15.13981 -14.98447 -14.78603 -14.62017 -14.19688 -14.03627 -13.66690 -13.63930 -13.43526 -13.26854 -12.73878 -12.52150 -12.49542 -12.30236 -12.23159 -12.14567 -11.90452 -11.84900 -11.60982 -11.39866 -11.24160 -11.07806 -10.64241 -10.62186 -9.78835 -9.61153 -8.97753 -8.27974 -6.24861 0.41851 0.53627 1.31592 1.35117 1.44644 2.34821 2.68163 2.95544 3.04873 3.40856 3.79741 3.83965 3.97765 4.05681 4.14069 4.21025 4.27275 4.30436 4.33990 4.38453 4.41356 4.49411 4.55197 4.61273 4.69230 4.75634 4.78227 4.84227 4.91800 5.00332 5.10069 5.11361 5.17083 5.19620 5.23147 5.26285 5.35410 5.50126 5.59033 5.64227 5.69322 5.80537 6.11561 6.13461 6.23770 6.52506 6.80683 6.99184 7.38597 8.89599 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020903 B = 0.004054 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.213926 B = 6904.635443 C = 7367.552832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.203 3.797 4 H -0.004 1.004 5 C -0.505 4.505 6 H 0.026 0.974 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.224 1.224 13 N -0.679 5.679 14 C 0.093 3.907 15 H 0.051 0.949 16 C -0.175 4.175 17 C 0.066 3.934 18 O -0.381 6.381 19 C 0.137 3.863 20 H 0.057 0.943 21 C -0.092 4.092 22 C -0.106 4.106 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.114 4.114 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.335 0.665 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.123 0.877 44 H 0.072 0.928 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 12.215 9.823 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.093 3.907 4 H 0.014 0.986 5 C -0.544 4.544 6 H 0.045 0.955 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.748 3.252 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.147 1.147 13 N -0.310 5.310 14 C -0.018 4.018 15 H 0.069 0.931 16 C -0.214 4.214 17 C -0.011 4.011 18 O -0.301 6.301 19 C 0.079 3.921 20 H 0.075 0.925 21 C -0.093 4.093 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.152 4.152 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.141 0.859 44 H 0.091 0.909 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.527 12.218 10.070 20.189 hybrid contribution 0.009 -0.504 -1.732 1.804 sum -12.518 11.714 8.338 19.064 Atomic orbital electron populations 1.21825 0.94724 1.02134 1.01684 1.21973 0.95846 0.98055 1.00788 1.19310 0.93194 0.91112 0.87037 0.98623 1.21247 0.91852 1.40525 1.00743 0.95520 1.25754 0.95875 0.94626 1.02019 1.70126 1.13819 1.46112 1.28591 0.86213 0.81881 0.77665 0.79407 1.20560 1.21441 1.14663 1.60374 1.36322 1.03712 1.30580 1.21471 0.95798 0.88427 0.96092 0.93091 1.22875 0.98236 0.97904 1.02425 1.22627 1.02462 0.91789 0.84212 1.87875 1.33463 1.73869 1.34851 1.20798 0.85587 0.93177 0.92562 0.92475 1.19656 0.95109 0.99697 0.94791 1.21116 0.98640 0.99026 0.93644 1.21479 0.98496 0.98117 0.96454 1.21529 0.92951 0.99248 1.00333 1.21400 1.00330 0.99389 0.93305 1.21198 0.96628 0.98404 0.98322 1.22005 1.02161 0.93659 0.97416 0.91670 0.93227 0.91610 0.92944 0.93723 0.92785 0.84551 0.91176 0.90030 0.93412 0.86334 0.85697 0.83755 0.83421 0.83899 0.85872 0.90942 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.63 71.98 0.69 -3.71 16 2 C -0.13 -5.21 4.78 30.59 0.15 -5.06 16 3 C 0.20 9.14 1.40 44.17 0.06 9.20 16 4 H 0.00 -0.17 5.91 -2.39 -0.01 -0.18 16 5 C -0.51 -28.97 8.82 25.60 0.23 -28.74 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 7 C 0.01 0.84 5.33 84.66 0.45 1.29 16 8 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 9 Si 0.92 43.24 25.78 68.60 1.77 45.01 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.22 -9.31 5.50 99.48 0.55 -8.76 16 13 N -0.68 -26.74 6.05 -472.69 -2.86 -29.60 16 14 C 0.09 3.28 2.36 45.04 0.11 3.39 16 15 H 0.05 2.16 7.55 -2.39 -0.02 2.14 16 16 C -0.18 -4.86 5.39 30.68 0.17 -4.69 16 17 C 0.07 1.64 6.84 72.01 0.49 2.13 16 18 O -0.38 -10.62 9.72 -148.98 -1.45 -12.06 16 19 C 0.14 3.99 2.85 29.88 0.09 4.07 16 20 H 0.06 1.73 8.00 -2.38 -0.02 1.71 16 21 C -0.09 -2.49 4.97 -19.87 -0.10 -2.59 16 22 C -0.11 -2.57 9.36 22.27 0.21 -2.36 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 24 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 26 C -0.13 -3.16 9.67 22.27 0.22 -2.95 16 27 C -0.11 -3.69 5.01 30.69 0.15 -3.54 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.73 6.69 -2.38 -0.02 1.72 16 31 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.04 1.93 4.99 -2.39 -0.01 1.91 16 33 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.33 11.31 6.34 -89.70 -0.57 10.74 16 35 H 0.07 1.98 7.56 -2.39 -0.02 1.96 16 36 H 0.08 2.05 8.08 -2.38 -0.02 2.03 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.13 2.93 7.77 -2.91 -0.02 2.91 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.12 2.92 8.04 -2.91 -0.02 2.89 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -68.10 350.22 1.57 -66.53 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.23 Total: 29.69 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.58 Total: -40.20 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.56 Total: -88.97 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.45 Total: -12.06 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.77 Total: 45.01 kcal Total: -68.10 1.57 -66.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.631 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds