Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46963 * 2 1 4 4 N 1.46507 * 109.46779 * 120.00020 * 2 1 3 5 5 C 1.46496 * 119.99747 * 299.99755 * 4 2 1 6 6 C 1.52995 * 109.47070 * 90.00492 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.34768 * 120.00006 * 120.00453 * 4 2 1 14 14 O 1.21282 * 120.00126 * 179.97438 * 13 4 2 15 15 C 1.50707 * 120.00355 * 359.97438 * 13 4 2 16 16 C 1.52997 * 109.47378 * 180.02562 * 15 13 4 17 17 C 1.50697 * 109.47000 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00426 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99921 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99910 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99645 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47508 * 90.00211 * 21 19 17 23 23 H 1.48508 * 109.46684 * 209.99777 * 21 19 17 24 24 H 1.48497 * 109.47490 * 329.99595 * 21 19 17 25 25 H 1.08997 * 109.46980 * 299.99931 * 1 2 3 26 26 H 1.08996 * 109.46672 * 60.00283 * 1 2 3 27 27 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47242 * 239.99598 * 2 1 3 29 29 H 1.08998 * 109.46983 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47195 * 299.99397 * 3 2 1 31 31 H 1.08997 * 109.47216 * 60.00213 * 3 2 1 32 32 H 1.08995 * 109.47623 * 330.00262 * 5 4 2 33 33 H 1.09004 * 109.47046 * 210.00269 * 5 4 2 34 34 H 1.09005 * 109.47610 * 60.00011 * 6 5 4 35 35 H 1.09000 * 109.47256 * 299.99352 * 6 5 4 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 41 41 H 1.08999 * 109.46781 * 300.00641 * 15 13 4 42 42 H 1.09000 * 109.46259 * 60.00485 * 15 13 4 43 43 H 1.09002 * 109.47318 * 300.00466 * 16 15 13 44 44 H 1.09003 * 109.46916 * 60.00422 * 16 15 13 45 45 H 0.96998 * 119.99838 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 0.3634 -0.8486 2.9899 7 6 -0.0005 -0.3342 4.3589 8 6 -0.7951 0.7898 4.4862 9 6 -1.1292 1.2614 5.7419 10 6 -0.6693 0.6087 6.8704 11 6 0.1297 -0.5121 6.7431 12 6 0.4600 -0.9864 5.4874 13 6 2.7932 -1.7864 1.0726 14 8 3.1978 -2.3579 2.0629 15 6 3.1569 -2.3016 -0.2961 16 6 4.0362 -3.5458 -0.1557 17 6 4.4004 -4.0606 -1.5243 18 1 4.0405 -3.5516 -2.4062 19 6 5.1924 -5.1822 -1.6508 20 7 5.5098 -5.6317 -2.8453 21 14 5.8132 -6.0639 -0.1255 22 1 4.8340 -7.1051 0.2775 23 1 7.1211 -6.7023 -0.4207 24 1 5.9781 -5.0854 0.9793 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5294 0.8907 2.4844 33 1 2.4628 -0.4293 3.2292 34 1 0.4982 -1.9295 3.0324 35 1 -0.4351 -0.6094 2.2876 36 1 -1.1548 1.2995 3.6046 37 1 -1.7497 2.1398 5.8414 38 1 -0.9308 0.9770 7.8514 39 1 0.4927 -1.0195 7.6247 40 1 1.0802 -1.8650 5.3879 41 1 2.2485 -2.5586 -0.8408 42 1 3.7018 -1.5309 -0.8413 43 1 4.9446 -3.2892 0.3893 44 1 3.4909 -4.3163 0.3895 45 1 6.0673 -6.4205 -2.9342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324742673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -29.948722 kcal Electronic energy + Delta-G solvation = -22858.719371 eV Core-core repulsion = 19647.409310 eV Total energy + Delta-G solvation = -3211.310062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04650 -39.20688 -36.63477 -33.98631 -33.32412 -31.41225 -31.26363 -31.04611 -28.71977 -27.37964 -26.07600 -23.76365 -22.73154 -21.91820 -21.17640 -20.61275 -18.38642 -17.42025 -16.96128 -16.24777 -15.86182 -15.33983 -15.22849 -15.05401 -14.19534 -14.05318 -13.67998 -13.62954 -13.50374 -13.25006 -13.20256 -13.08730 -12.58927 -12.49471 -12.39524 -12.12426 -11.89576 -11.47106 -11.33585 -11.30523 -11.20768 -10.95527 -10.87840 -10.66132 -10.08698 -10.01194 -9.76843 -9.21073 -9.13117 -9.08981 -8.98252 -8.50499 -8.42009 -6.02200 -4.00695 1.17741 1.23238 3.10712 3.18547 3.38623 3.45187 3.56417 3.63416 4.51902 4.63491 4.66810 4.76618 4.83560 4.89764 4.96051 4.99122 5.11943 5.26876 5.30062 5.33458 5.37332 5.39813 5.45277 5.50804 5.57657 5.68968 5.76446 5.83336 5.86800 5.95103 5.96809 6.08315 6.09526 6.14578 6.19015 6.28806 6.34567 6.51711 6.68063 6.78126 6.85200 7.37923 7.45059 7.66530 7.80854 8.50661 8.65370 9.00903 9.61102 11.10664 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.003589 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.836843 B = 7799.554338 C = 8942.227107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.163 4.163 4 N -0.618 5.618 5 C 0.123 3.877 6 C -0.104 4.104 7 C -0.075 4.075 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.128 4.128 11 C -0.119 4.119 12 C -0.113 4.113 13 C 0.512 3.488 14 O -0.538 6.538 15 C -0.122 4.122 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 17.126 13.493 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 C -0.221 4.221 4 N -0.352 5.352 5 C 0.000 4.000 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.137 4.137 9 C -0.139 4.139 10 C -0.146 4.146 11 C -0.137 4.137 12 C -0.131 4.131 13 C 0.302 3.698 14 O -0.414 6.414 15 C -0.161 4.161 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.234 16.666 13.919 25.963 hybrid contribution 0.255 -0.474 0.702 0.885 sum -13.978 16.192 14.621 25.910 Atomic orbital electron populations 1.22296 0.95257 1.02615 1.02150 1.21210 0.94254 0.93507 0.88809 1.22168 1.01999 0.95840 1.02112 1.48232 1.51837 1.29206 1.05938 1.21255 0.96247 0.97708 0.84784 1.21208 0.98522 1.01655 0.92810 1.19885 0.97052 0.95374 0.95205 1.21048 0.98761 0.96403 0.97451 1.21116 1.00260 0.99912 0.92645 1.21129 0.98675 0.96327 0.98512 1.21174 0.98322 0.96732 0.97430 1.21200 0.99643 1.00171 0.92101 1.21553 0.76381 0.78735 0.93139 1.90641 1.53254 1.56986 1.40492 1.21695 1.01955 1.00877 0.91622 1.19370 0.94807 0.91785 0.97639 1.21112 1.31554 1.11795 0.91719 0.90964 1.24971 0.95596 0.96850 0.95817 1.69912 1.37802 1.24352 1.22222 0.86802 0.78248 0.80314 0.84233 1.20254 1.21456 1.18531 0.92170 0.91528 0.91968 0.88039 0.92002 0.91426 0.92482 0.90900 0.90066 0.90412 0.90260 0.86229 0.86269 0.86351 0.86152 0.85776 0.89727 0.89707 0.95877 0.96337 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.14 37.16 0.30 -1.17 16 2 C 0.13 1.37 3.17 -67.93 -0.22 1.16 16 3 C -0.16 -1.49 9.17 37.16 0.34 -1.15 16 4 N -0.62 -8.56 2.40 -166.11 -0.40 -8.95 16 5 C 0.12 1.52 4.81 -4.05 -0.02 1.50 16 6 C -0.10 -1.19 5.39 -27.88 -0.15 -1.34 16 7 C -0.07 -0.81 5.13 -104.62 -0.54 -1.35 16 8 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 9 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 10 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 11 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 12 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 13 C 0.51 9.46 7.67 -10.99 -0.08 9.37 16 14 O -0.54 -11.92 15.56 5.56 0.09 -11.84 16 15 C -0.12 -2.39 3.95 -27.88 -0.11 -2.50 16 16 C 0.00 0.05 3.33 -27.89 -0.09 -0.05 16 17 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 21 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 25 H 0.06 0.49 6.17 -51.93 -0.32 0.17 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.18 5.77 -51.93 -0.30 0.88 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 6.66 -51.93 -0.35 0.13 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 33 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 34 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.08 0.80 5.39 -51.93 -0.28 0.52 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.08 1.54 7.79 -51.93 -0.40 1.13 16 42 H 0.08 1.55 7.79 -51.93 -0.40 1.14 16 43 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 44 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -33.59 360.92 -9.07 -42.67 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.35 Total: -1.40 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.96 Total: -16.66 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.38 Total: -36.28 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.59 -9.07 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.717 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds