Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46963 * 2 1 4 4 N 1.46507 * 109.46779 * 120.00020 * 2 1 3 5 5 C 1.46496 * 119.99747 * 299.99755 * 4 2 1 6 6 C 1.52995 * 109.47070 * 90.00492 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.34768 * 120.00006 * 120.00453 * 4 2 1 14 14 O 1.21282 * 120.00126 * 179.97438 * 13 4 2 15 15 C 1.50707 * 120.00355 * 359.97438 * 13 4 2 16 16 C 1.52997 * 109.47378 * 180.02562 * 15 13 4 17 17 C 1.50697 * 109.47000 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00426 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99921 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99910 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99645 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47508 * 90.00211 * 21 19 17 23 23 H 1.48508 * 109.46684 * 209.99777 * 21 19 17 24 24 H 1.48497 * 109.47490 * 329.99595 * 21 19 17 25 25 H 1.08997 * 109.46980 * 299.99931 * 1 2 3 26 26 H 1.08996 * 109.46672 * 60.00283 * 1 2 3 27 27 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47242 * 239.99598 * 2 1 3 29 29 H 1.08998 * 109.46983 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47195 * 299.99397 * 3 2 1 31 31 H 1.08997 * 109.47216 * 60.00213 * 3 2 1 32 32 H 1.08995 * 109.47623 * 330.00262 * 5 4 2 33 33 H 1.09004 * 109.47046 * 210.00269 * 5 4 2 34 34 H 1.09005 * 109.47610 * 60.00011 * 6 5 4 35 35 H 1.09000 * 109.47256 * 299.99352 * 6 5 4 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 41 41 H 1.08999 * 109.46781 * 300.00641 * 15 13 4 42 42 H 1.09000 * 109.46259 * 60.00485 * 15 13 4 43 43 H 1.09002 * 109.47318 * 300.00466 * 16 15 13 44 44 H 1.09003 * 109.46916 * 60.00422 * 16 15 13 45 45 H 0.96998 * 119.99838 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 0.3634 -0.8486 2.9899 7 6 -0.0005 -0.3342 4.3589 8 6 -0.7951 0.7898 4.4862 9 6 -1.1292 1.2614 5.7419 10 6 -0.6693 0.6087 6.8704 11 6 0.1297 -0.5121 6.7431 12 6 0.4600 -0.9864 5.4874 13 6 2.7932 -1.7864 1.0726 14 8 3.1978 -2.3579 2.0629 15 6 3.1569 -2.3016 -0.2961 16 6 4.0362 -3.5458 -0.1557 17 6 4.4004 -4.0606 -1.5243 18 1 4.0405 -3.5516 -2.4062 19 6 5.1924 -5.1822 -1.6508 20 7 5.5098 -5.6317 -2.8453 21 14 5.8132 -6.0639 -0.1255 22 1 4.8340 -7.1051 0.2775 23 1 7.1211 -6.7023 -0.4207 24 1 5.9781 -5.0854 0.9793 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5294 0.8907 2.4844 33 1 2.4628 -0.4293 3.2292 34 1 0.4982 -1.9295 3.0324 35 1 -0.4351 -0.6094 2.2876 36 1 -1.1548 1.2995 3.6046 37 1 -1.7497 2.1398 5.8414 38 1 -0.9308 0.9770 7.8514 39 1 0.4927 -1.0195 7.6247 40 1 1.0802 -1.8650 5.3879 41 1 2.2485 -2.5586 -0.8408 42 1 3.7018 -1.5309 -0.8413 43 1 4.9446 -3.2892 0.3893 44 1 3.4909 -4.3163 0.3895 45 1 6.0673 -6.4205 -2.9342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324742673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -48.218365 kcal Electronic energy + Delta-G solvation = -22859.511602 eV Core-core repulsion = 19647.409310 eV Total energy + Delta-G solvation = -3212.102293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26102 -40.06113 -37.85778 -35.65126 -34.64329 -33.26115 -32.37555 -31.76164 -29.85138 -28.17525 -27.71616 -24.93583 -23.45413 -23.22047 -22.43094 -21.79338 -19.68812 -19.17597 -17.97327 -17.69824 -16.96410 -16.62103 -16.29655 -16.05139 -15.94162 -15.07689 -14.93261 -14.92506 -14.69361 -14.35836 -14.05294 -14.04667 -13.91457 -13.86775 -13.47805 -13.12479 -13.05618 -12.90617 -12.73860 -12.25786 -12.12584 -12.05658 -11.99520 -11.91942 -11.81371 -11.74088 -11.51325 -11.35992 -10.79529 -10.67537 -9.91183 -9.81758 -9.44376 -8.33001 -6.35564 0.43226 0.50375 1.31111 1.33039 1.48418 1.65781 2.02221 2.33450 2.88790 3.02582 3.64096 3.83419 3.91600 3.98743 4.13671 4.18764 4.19152 4.30685 4.32946 4.35084 4.39700 4.45549 4.51061 4.62747 4.66149 4.75242 4.82059 4.85888 4.93354 4.99795 5.05400 5.14084 5.17378 5.19410 5.30113 5.35924 5.41380 5.42693 5.57538 5.59031 5.63278 5.69574 5.74244 6.13638 6.22102 6.41354 6.70281 7.23610 7.29754 8.82652 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.003589 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.836843 B = 7799.554338 C = 8942.227107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 C -0.158 4.158 4 N -0.604 5.604 5 C 0.125 3.875 6 C -0.092 4.092 7 C -0.089 4.089 8 C -0.119 4.119 9 C -0.122 4.122 10 C -0.130 4.130 11 C -0.129 4.129 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.585 6.585 15 C -0.114 4.114 16 C 0.007 3.993 17 C -0.528 4.528 18 H 0.051 0.949 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.936 3.064 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.264 1.264 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.007 0.993 44 H 0.006 0.994 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.484 19.633 14.459 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 C -0.216 4.216 4 N -0.336 5.336 5 C 0.003 3.997 6 C -0.130 4.130 7 C -0.090 4.090 8 C -0.137 4.137 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.156 4.156 13 C 0.301 3.699 14 O -0.465 6.465 15 C -0.154 4.154 16 C -0.031 4.031 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.761 3.239 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.189 1.189 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.173 19.217 14.869 29.188 hybrid contribution 0.783 -1.159 0.369 1.446 sum -15.390 18.058 15.238 28.198 Atomic orbital electron populations 1.22262 0.93172 1.02406 1.03968 1.21539 0.95926 0.94305 0.86947 1.22136 1.01108 0.94439 1.03880 1.48212 1.49982 1.27549 1.07846 1.21351 0.95832 0.99325 0.83194 1.21055 0.98415 0.99553 0.93991 1.19876 0.98265 0.96485 0.94372 1.21307 0.97913 0.95622 0.98864 1.21503 0.99850 1.00465 0.92138 1.21480 0.97738 0.95597 1.00000 1.21380 0.98700 0.97441 0.97170 1.21242 1.00605 1.00388 0.93408 1.21253 0.77034 0.79830 0.91807 1.90623 1.55545 1.58894 1.41425 1.21505 1.01747 0.99006 0.93094 1.19208 0.95030 0.93825 0.95028 1.21406 1.30966 1.11539 0.92650 0.93029 1.25771 0.96066 0.97874 0.98526 1.70015 1.38901 1.25219 1.24123 0.85862 0.78311 0.79204 0.80539 1.19383 1.20160 1.18852 0.90800 0.89249 0.93228 0.88872 0.93417 0.89145 0.91221 0.87852 0.92795 0.93604 0.88428 0.83922 0.83460 0.83951 0.85055 0.87636 0.88284 0.88323 0.97418 0.97547 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.14 71.98 0.59 -1.78 16 2 C 0.12 2.26 3.17 44.99 0.14 2.41 16 3 C -0.16 -2.40 9.17 71.98 0.66 -1.74 16 4 N -0.60 -16.29 2.40 -797.84 -1.91 -18.20 16 5 C 0.13 3.01 4.81 86.38 0.42 3.42 16 6 C -0.09 -2.07 5.39 29.85 0.16 -1.91 16 7 C -0.09 -1.88 5.13 -19.86 -0.10 -1.98 16 8 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 9 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 10 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 11 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 12 C -0.14 -3.20 9.70 22.27 0.22 -2.98 16 13 C 0.51 19.17 7.67 87.66 0.67 19.84 16 14 O -0.58 -26.93 15.56 -3.04 -0.05 -26.98 16 15 C -0.11 -4.50 3.95 29.85 0.12 -4.38 16 16 C 0.01 0.36 3.33 29.85 0.10 0.46 16 17 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 18 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 19 C 0.02 0.93 5.47 84.66 0.46 1.39 16 20 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 21 Si 0.94 47.59 27.47 68.60 1.88 49.47 16 22 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.26 -13.46 6.54 99.48 0.65 -12.81 16 25 H 0.07 0.90 6.17 -2.39 -0.01 0.88 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 2.00 5.77 -2.39 -0.01 1.99 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.89 6.66 -2.39 -0.02 0.88 16 32 H 0.10 1.86 6.43 -2.39 -0.02 1.84 16 33 H 0.05 1.62 7.42 -2.38 -0.02 1.60 16 34 H 0.05 1.32 8.09 -2.38 -0.02 1.30 16 35 H 0.10 1.78 5.39 -2.39 -0.01 1.77 16 36 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.11 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.10 3.59 7.79 -2.39 -0.02 3.57 16 42 H 0.10 3.59 7.79 -2.39 -0.02 3.57 16 43 H 0.01 0.40 7.16 -2.39 -0.02 0.39 16 44 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 45 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -74.83 360.92 5.68 -69.15 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.89 Total: 10.76 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.57 Total: -25.10 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.61 Total: -77.30 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.88 Total: 49.47 kcal Total: -74.83 5.68 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.928 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds