Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47362 * 2 1 4 4 H 1.09006 * 109.47350 * 56.04907 * 3 2 1 5 5 N 1.46904 * 109.47402 * 296.04823 * 3 2 1 6 6 C 1.46893 * 110.99686 * 295.99933 * 5 3 2 7 7 C 1.50707 * 109.46900 * 185.07220 * 6 5 3 8 8 C 1.38321 * 119.95931 * 90.00290 * 7 6 5 9 9 C 1.38285 * 120.13538 * 179.97438 * 8 7 6 10 10 C 1.38121 * 120.06764 * 359.97438 * 9 8 7 11 11 C 1.38859 * 119.92903 * 0.02562 * 10 9 8 12 12 O 1.35758 * 120.06588 * 179.97438 * 11 10 9 13 13 C 1.34825 * 116.99966 * 5.51672 * 12 11 10 14 14 H 1.07998 * 120.00111 * 4.90880 * 13 12 11 15 15 C 1.38656 * 119.99989 * 184.90879 * 13 12 11 16 16 N 1.31557 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00220 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47265 * 60.00081 * 17 15 13 19 19 H 1.48505 * 109.47279 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47342 * 300.00301 * 17 15 13 21 21 C 1.38075 * 119.96459 * 269.72644 * 7 6 5 22 22 C 1.52998 * 109.47280 * 176.04555 * 3 2 1 23 23 H 1.09001 * 115.55175 * 30.62600 * 22 3 2 24 24 C 1.53004 * 117.50034 * 176.29689 * 22 3 2 25 25 C 1.52997 * 60.00199 * 107.51446 * 24 22 3 26 26 H 1.08995 * 117.50109 * 107.48652 * 25 24 22 27 27 C 1.52996 * 117.49960 * 252.51475 * 25 24 22 28 28 H 1.08995 * 109.47418 * 65.27973 * 1 2 3 29 29 H 1.09002 * 109.47093 * 185.28053 * 1 2 3 30 30 H 1.09003 * 109.47407 * 305.28089 * 1 2 3 31 31 H 1.08999 * 109.47088 * 240.00036 * 2 1 3 32 32 H 1.08998 * 109.47005 * 120.00765 * 2 1 3 33 33 H 1.00900 * 110.99804 * 59.95402 * 5 3 2 34 34 H 1.08998 * 109.47602 * 305.07020 * 6 5 3 35 35 H 1.09007 * 109.47248 * 65.07588 * 6 5 3 36 36 H 1.07998 * 119.93578 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.96712 * 179.97438 * 9 8 7 38 38 H 1.07998 * 120.03477 * 180.02562 * 10 9 8 39 39 H 0.96994 * 120.00575 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.03766 * 0.02562 * 21 7 6 41 41 H 1.09000 * 117.50057 * 215.00344 * 24 22 3 42 42 H 1.09003 * 117.49499 * 0.02562 * 24 22 3 43 43 H 1.08994 * 109.47824 * 133.44323 * 27 25 24 44 44 H 1.09007 * 109.46983 * 253.44373 * 27 25 24 45 45 H 1.09007 * 109.47077 * 13.43596 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6200 1.9763 0.8525 5 7 1.6299 2.1069 -1.2443 6 6 2.2550 1.4708 -2.4115 7 6 1.9121 2.2526 -3.6534 8 6 2.7325 3.2865 -4.0673 9 6 2.4216 4.0059 -5.2066 10 6 1.2905 3.6934 -5.9352 11 6 0.4650 2.6560 -5.5222 12 8 -0.6477 2.3469 -6.2359 13 6 -0.8339 3.0078 -7.3962 14 1 -0.0761 3.6866 -7.7586 15 6 -1.9983 2.8160 -8.1242 16 7 -2.9216 1.9895 -7.6825 17 14 -2.2560 3.7312 -9.7321 18 1 -1.1743 3.3728 -10.6845 19 1 -3.5702 3.3536 -10.3115 20 1 -2.2280 5.1942 -9.4790 21 6 0.7825 1.9323 -4.3800 22 6 3.5667 1.4435 0.0995 23 1 4.0678 0.5863 -0.3503 24 6 4.2785 2.7960 0.0268 25 6 4.1928 2.0472 1.3583 26 1 5.1055 1.5872 1.7367 27 6 3.2440 2.6036 2.4219 28 1 -0.3634 0.4297 -0.9334 29 1 -0.3633 -1.0233 0.0946 30 1 -0.3634 0.5936 0.8389 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6249 2.1184 -1.3338 34 1 3.3369 1.4538 -2.2801 35 1 1.8850 0.4502 -2.5108 36 1 3.6176 3.5324 -3.4996 37 1 3.0638 4.8129 -5.5271 38 1 1.0484 4.2553 -6.8252 39 1 -3.7360 1.8550 -8.1919 40 1 0.1446 1.1223 -4.0585 41 1 5.2477 2.8286 -0.4707 42 1 3.6589 3.6850 -0.0914 43 1 2.6498 1.7910 2.8397 44 1 3.8240 3.0748 3.2154 45 1 2.5823 3.3416 1.9682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345076403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = 8.206311 kcal Electronic energy + Delta-G solvation = -22744.971303 eV Core-core repulsion = 19535.315768 eV Total energy + Delta-G solvation = -3209.655535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.46460 -38.78470 -36.72651 -35.54120 -32.51328 -32.16096 -30.07393 -28.91898 -28.62094 -26.56191 -25.36166 -24.47424 -21.80038 -21.56483 -21.10767 -20.71581 -18.84641 -17.63834 -17.01274 -16.09689 -15.66300 -15.19419 -14.96756 -14.51349 -14.33163 -14.18181 -13.78566 -13.49541 -13.47761 -13.29263 -12.85958 -12.59375 -12.54078 -12.32875 -11.97320 -11.84637 -11.62971 -11.52157 -11.32263 -11.22897 -10.91643 -10.82412 -10.62187 -10.56591 -10.55134 -10.36613 -10.03622 -9.87092 -9.32826 -8.79972 -8.27597 -7.97428 -7.17157 -6.41364 -4.00434 2.17537 2.45483 3.15120 3.16056 3.18674 3.65749 3.99433 4.37182 4.48604 4.70519 4.72608 4.92095 4.96916 5.06596 5.15617 5.17023 5.20707 5.27318 5.37205 5.45385 5.56934 5.62790 5.65117 5.69922 5.76942 5.82828 5.85586 5.88498 5.90395 5.98670 6.04083 6.06967 6.17529 6.23287 6.26511 6.31268 6.39049 6.72278 6.97096 7.12039 7.18593 7.34120 7.44878 7.48320 7.57844 7.89088 8.03751 9.04558 9.75799 10.76958 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.003224 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.684700 B = 8683.699048 C = 9456.149863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.158 4.158 3 C 0.113 3.887 4 H 0.086 0.914 5 N -0.672 5.672 6 C 0.104 3.896 7 C -0.043 4.043 8 C -0.188 4.188 9 C -0.078 4.078 10 C -0.232 4.232 11 C 0.153 3.847 12 O -0.181 6.181 13 C -0.391 4.391 14 H 0.090 0.910 15 C 0.039 3.961 16 N -0.865 5.865 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.186 4.186 22 C -0.144 4.144 23 H 0.097 0.903 24 C -0.154 4.154 25 C -0.157 4.157 26 H 0.098 0.902 27 C -0.123 4.123 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.344 0.656 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.270 0.730 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 -0.920 15.769 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.197 4.197 3 C 0.004 3.996 4 H 0.104 0.896 5 N -0.303 5.303 6 C -0.024 4.024 7 C -0.043 4.043 8 C -0.208 4.208 9 C -0.097 4.097 10 C -0.252 4.252 11 C 0.099 3.901 12 O -0.085 6.085 13 C -0.467 4.467 14 H 0.107 0.893 15 C -0.165 4.165 16 N -0.501 5.501 17 Si 0.764 3.236 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.206 4.206 22 C -0.163 4.163 23 H 0.115 0.885 24 C -0.192 4.192 25 C -0.176 4.176 26 H 0.116 0.884 27 C -0.180 4.180 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.205 -0.673 15.774 19.361 hybrid contribution -0.597 -0.372 -1.016 1.236 sum 10.609 -1.044 14.758 18.206 Atomic orbital electron populations 1.21790 0.95587 1.01858 1.02076 1.22247 0.96374 0.98743 1.02381 1.21241 0.92566 0.92329 0.93499 0.89590 1.60669 1.13920 1.55080 1.00635 1.20811 0.99584 0.94366 0.87661 1.19205 0.94345 0.96176 0.94610 1.20402 1.01641 0.99604 0.99111 1.20745 0.95994 0.98142 0.94769 1.21177 0.98168 1.01989 1.03843 1.19321 0.87629 0.92090 0.91025 1.83986 1.35118 1.57444 1.31928 1.21252 1.04513 1.25370 0.95585 0.89250 1.25260 0.94545 0.97131 0.99567 1.70025 1.07781 1.33661 1.38597 0.85806 0.78083 0.79383 0.80298 1.19551 1.20317 1.19532 1.20023 0.99643 1.03619 0.97330 1.22304 0.94509 0.97628 1.01845 0.88455 1.22963 1.01352 0.96141 0.98701 1.22367 1.00837 1.04541 0.89855 0.88383 1.21353 0.98526 1.00541 0.97548 0.92387 0.92644 0.92646 0.91637 0.91780 0.83630 0.90394 0.94791 0.87713 0.87630 0.85765 0.92059 0.87094 0.89477 0.87905 0.92439 0.92511 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.53 37.16 0.35 -1.22 16 2 C -0.16 -1.58 5.23 -26.74 -0.14 -1.72 16 3 C 0.11 1.19 2.65 -67.72 -0.18 1.01 16 4 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 5 N -0.67 -8.66 6.21 -107.99 -0.67 -9.33 16 6 C 0.10 1.48 5.13 -4.98 -0.03 1.45 16 7 C -0.04 -0.77 5.43 -104.65 -0.57 -1.33 16 8 C -0.19 -3.34 9.70 -39.53 -0.38 -3.73 16 9 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 10 C -0.23 -5.16 9.14 -39.39 -0.36 -5.52 16 11 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 12 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 13 C -0.39 -11.06 9.45 30.89 0.29 -10.77 16 14 H 0.09 2.35 5.28 -52.49 -0.28 2.07 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.87 -25.61 13.67 55.48 0.76 -24.85 16 17 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 21 C -0.19 -3.96 9.64 -39.40 -0.38 -4.34 16 22 C -0.14 -1.44 3.67 -90.62 -0.33 -1.77 16 23 H 0.10 0.98 7.98 -51.93 -0.41 0.56 16 24 C -0.15 -1.56 9.64 -26.73 -0.26 -1.82 16 25 C -0.16 -1.39 6.41 -90.62 -0.58 -1.97 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 C -0.12 -0.99 8.72 37.16 0.32 -0.67 16 28 H 0.06 0.66 7.00 -51.93 -0.36 0.30 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.71 6.42 -51.93 -0.33 0.38 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.34 4.66 7.25 -39.29 -0.28 4.37 16 34 H 0.08 1.05 6.60 -51.93 -0.34 0.71 16 35 H 0.03 0.48 6.52 -51.92 -0.34 0.14 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.12 2.77 5.70 -52.49 -0.30 2.47 16 39 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 40 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 43 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.54 7.27 -51.93 -0.38 0.16 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -29.82 360.43 -9.61 -39.43 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.12 Total: 8.64 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -2.99 Total: -29.82 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.09 Total: -34.18 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.82 -9.61 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345076403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.641 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds