Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 H 1.08994 * 109.47162 * 52.57148 * 3 2 1 5 5 N 1.46901 * 109.47052 * 292.57071 * 3 2 1 6 6 C 1.46898 * 111.00275 * 306.30043 * 5 3 2 7 7 C 1.50703 * 109.46858 * 186.96987 * 6 5 3 8 8 C 1.38327 * 119.96482 * 270.01674 * 7 6 5 9 9 C 1.38275 * 120.13967 * 179.97438 * 8 7 6 10 10 C 1.38124 * 120.06538 * 359.76531 * 9 8 7 11 11 C 1.38853 * 119.93439 * 0.49269 * 10 9 8 12 12 O 1.35752 * 120.07251 * 179.75929 * 11 10 9 13 13 C 1.34831 * 116.99810 * 354.25561 * 12 11 10 14 14 H 1.08005 * 119.99928 * 4.22101 * 13 12 11 15 15 C 1.38649 * 119.99961 * 184.22226 * 13 12 11 16 16 N 1.31557 * 120.00229 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46942 * 90.00411 * 17 15 13 19 19 H 1.48496 * 109.47466 * 209.99741 * 17 15 13 20 20 H 1.48497 * 109.46966 * 330.00411 * 17 15 13 21 21 C 1.38079 * 119.96618 * 90.00301 * 7 6 5 22 22 C 1.53000 * 109.46877 * 172.57303 * 3 2 1 23 23 H 1.08999 * 115.55196 * 92.15934 * 22 3 2 24 24 C 1.53003 * 117.49997 * 306.48858 * 22 3 2 25 25 C 1.53001 * 117.49926 * 237.86500 * 22 3 2 26 26 H 1.08997 * 117.50201 * 214.97700 * 25 22 3 27 27 C 1.53002 * 117.49671 * 0.02562 * 25 22 3 28 28 H 1.08997 * 109.47117 * 66.04018 * 1 2 3 29 29 H 1.09001 * 109.47256 * 186.03612 * 1 2 3 30 30 H 1.08998 * 109.47021 * 306.03850 * 1 2 3 31 31 H 1.09000 * 109.46684 * 240.00395 * 2 1 3 32 32 H 1.08993 * 109.47490 * 120.00532 * 2 1 3 33 33 H 1.00903 * 110.99896 * 70.25779 * 5 3 2 34 34 H 1.08995 * 109.47348 * 66.96513 * 6 5 3 35 35 H 1.08998 * 109.46788 * 306.96637 * 6 5 3 36 36 H 1.08002 * 119.92963 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.96758 * 180.02562 * 9 8 7 38 38 H 1.08002 * 120.03096 * 180.27484 * 10 9 8 39 39 H 0.97002 * 120.00644 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.03789 * 359.97048 * 21 7 6 41 41 H 1.08998 * 117.49821 * 0.02562 * 24 22 3 42 42 H 1.09005 * 117.49928 * 144.99645 * 24 22 3 43 43 H 1.08999 * 109.46983 * 61.88692 * 27 25 22 44 44 H 1.08999 * 109.46866 * 181.88219 * 27 25 22 45 45 H 1.08993 * 109.46940 * 301.88066 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5722 1.9932 0.8160 5 7 1.7020 2.0814 -1.2789 6 6 2.1900 1.2831 -2.4114 7 6 1.9787 2.0476 -3.6928 8 6 0.7973 1.9018 -4.3975 9 6 0.5994 2.6019 -5.5734 10 6 1.5795 3.4529 -6.0454 11 6 2.7687 3.5973 -5.3432 12 8 3.7359 4.4293 -5.8072 13 6 3.5302 4.9942 -7.0140 14 1 2.5981 4.8313 -7.5347 15 6 4.5152 5.7842 -7.5867 16 7 5.6509 5.9822 -6.9527 17 14 4.2305 6.5663 -9.2590 18 1 3.6100 7.9037 -9.0808 19 1 5.5290 6.7133 -9.9643 20 1 3.3262 5.7039 -10.0612 21 6 2.9644 2.8929 -4.1622 22 6 3.5586 1.4466 0.1865 23 1 4.1451 1.4425 -0.7323 24 6 4.1247 0.6891 1.3893 25 6 4.1216 2.2191 1.3810 26 1 5.0787 2.7236 1.2484 27 6 3.1229 2.9281 2.2981 28 1 -0.3633 0.4173 -0.9391 29 1 -0.3634 -1.0220 0.1081 30 1 -0.3633 0.6046 0.8310 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.7085 2.2422 -1.3513 34 1 1.6423 0.3418 -2.4552 35 1 3.2528 1.0793 -2.2810 36 1 0.0275 1.2405 -4.0280 37 1 -0.3242 2.4863 -6.1211 38 1 1.4225 4.0029 -6.9616 39 1 6.3402 6.5346 -7.3534 40 1 3.8863 3.0069 -3.6113 41 1 3.4153 0.1876 2.0475 42 1 5.0836 0.1867 1.2618 43 1 2.4599 2.1914 2.7517 44 1 3.6631 3.4612 3.0804 45 1 2.5343 3.6366 1.7154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345076404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 11.863829 kcal Electronic energy + Delta-G solvation = -22675.740937 eV Core-core repulsion = 19466.244004 eV Total energy + Delta-G solvation = -3209.496933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.48586 -38.80462 -36.80210 -35.56150 -32.45864 -32.14701 -30.12808 -28.98004 -28.65446 -26.43570 -25.33395 -24.36800 -22.56770 -21.59033 -20.91444 -20.47929 -18.75352 -17.67537 -16.99087 -16.37088 -15.61501 -15.07326 -14.94065 -14.52651 -14.34221 -14.26142 -13.95274 -13.54793 -13.30211 -13.22901 -12.84072 -12.81704 -12.44643 -12.29290 -11.98512 -11.90209 -11.65951 -11.51019 -11.48264 -11.25869 -10.94673 -10.84512 -10.67613 -10.52481 -10.48325 -10.37898 -10.07345 -9.73841 -9.28419 -8.80176 -8.26081 -7.98918 -7.17928 -6.40010 -3.98983 2.18715 2.42835 3.15471 3.16179 3.21035 3.67295 4.00300 4.27283 4.52947 4.67296 4.74812 4.90026 4.99453 5.02333 5.13341 5.13591 5.20643 5.26264 5.38841 5.44139 5.58970 5.61620 5.63343 5.65005 5.74111 5.76441 5.80656 5.81940 5.85778 5.97383 6.00627 6.02042 6.11840 6.21422 6.24303 6.34178 6.42716 6.72809 6.98175 7.11940 7.16245 7.35414 7.40277 7.49583 7.56426 7.88485 8.05036 9.05685 9.77158 10.78204 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.003389 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.023270 B = 8259.685557 C = 9314.355788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.162 4.162 3 C 0.115 3.885 4 H 0.085 0.915 5 N -0.670 5.670 6 C 0.101 3.899 7 C -0.044 4.044 8 C -0.207 4.207 9 C -0.076 4.076 10 C -0.234 4.234 11 C 0.152 3.848 12 O -0.179 6.179 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.167 4.167 22 C -0.136 4.136 23 H 0.109 0.891 24 C -0.181 4.181 25 C -0.149 4.149 26 H 0.102 0.898 27 C -0.122 4.122 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.342 0.658 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.269 0.731 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -10.411 14.307 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C 0.005 3.995 4 H 0.103 0.897 5 N -0.300 5.300 6 C -0.027 4.027 7 C -0.044 4.044 8 C -0.227 4.227 9 C -0.094 4.094 10 C -0.253 4.253 11 C 0.099 3.901 12 O -0.083 6.083 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.187 4.187 22 C -0.155 4.155 23 H 0.127 0.873 24 C -0.218 4.218 25 C -0.167 4.167 26 H 0.120 0.880 27 C -0.179 4.179 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.716 -9.782 14.366 18.633 hybrid contribution -0.776 -0.345 -0.976 1.293 sum -7.492 -10.127 13.391 18.385 Atomic orbital electron populations 1.21789 0.95906 1.01641 1.01790 1.22315 0.95953 0.98977 1.02853 1.21196 0.93179 0.92372 0.92731 0.89687 1.60502 1.20692 1.48486 1.00355 1.20869 1.00634 0.93262 0.87910 1.19178 0.93811 0.96849 0.94598 1.20404 0.97909 1.05952 0.98425 1.20678 0.97579 0.95670 0.95522 1.21164 0.95282 1.05279 1.03584 1.19360 0.88625 0.89408 0.92724 1.83981 1.38836 1.51250 1.34221 1.21314 1.03078 1.29140 0.93220 0.89165 1.25265 0.94601 0.97055 0.99597 1.70041 1.05334 1.36500 1.38010 0.85731 0.78090 0.79394 0.80318 1.19916 1.20294 1.19248 1.20008 1.00658 1.00960 0.97047 1.22391 0.95552 1.04123 0.93425 0.87312 1.23138 1.02426 0.94370 1.01891 1.22334 1.00923 0.93243 1.00212 0.88012 1.21348 0.98127 1.00054 0.98391 0.92731 0.92772 0.92730 0.91237 0.91598 0.83900 0.94497 0.90437 0.88189 0.87680 0.85747 0.92101 0.86671 0.89020 0.89096 0.92872 0.92454 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.60 37.16 0.36 -0.95 16 2 C -0.16 -1.51 4.97 -26.73 -0.13 -1.65 16 3 C 0.12 1.23 2.65 -67.71 -0.18 1.05 16 4 H 0.09 0.88 5.87 -51.93 -0.30 0.57 16 5 N -0.67 -8.72 6.30 -107.99 -0.68 -9.40 16 6 C 0.10 1.44 4.86 -4.98 -0.02 1.41 16 7 C -0.04 -0.79 5.45 -104.65 -0.57 -1.36 16 8 C -0.21 -3.60 9.70 -39.53 -0.38 -3.99 16 9 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 10 C -0.23 -5.20 9.16 -39.40 -0.36 -5.56 16 11 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 12 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 13 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 14 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 17 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.17 -3.63 9.65 -39.39 -0.38 -4.01 16 22 C -0.14 -1.53 5.17 -90.62 -0.47 -2.00 16 23 H 0.11 1.41 6.39 -51.93 -0.33 1.08 16 24 C -0.18 -1.70 9.26 -26.73 -0.25 -1.95 16 25 C -0.15 -1.56 6.41 -90.62 -0.58 -2.14 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 27 C -0.12 -1.13 8.68 37.16 0.32 -0.81 16 28 H 0.05 0.49 7.39 -51.93 -0.38 0.11 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.07 0.71 6.05 -51.93 -0.31 0.40 16 32 H 0.07 0.57 6.64 -51.93 -0.35 0.22 16 33 H 0.34 4.24 7.88 -39.29 -0.31 3.93 16 34 H 0.04 0.48 6.43 -51.93 -0.33 0.14 16 35 H 0.08 1.12 6.12 -51.93 -0.32 0.80 16 36 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.12 2.77 5.64 -52.49 -0.30 2.48 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 41 H 0.09 0.78 7.05 -51.93 -0.37 0.41 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.44 7.61 -51.93 -0.39 0.04 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.66 7.77 -51.93 -0.40 0.26 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -30.32 357.05 -9.56 -39.89 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.89 Total: 8.62 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -3.11 Total: -30.10 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.08 Total: -34.34 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.32 -9.56 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345076404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.749 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds