Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 H 1.08994 * 109.47162 * 52.57148 * 3 2 1 5 5 N 1.46901 * 109.47052 * 292.57071 * 3 2 1 6 6 C 1.46898 * 111.00275 * 306.30043 * 5 3 2 7 7 C 1.50703 * 109.46858 * 186.96987 * 6 5 3 8 8 C 1.38327 * 119.96482 * 270.01674 * 7 6 5 9 9 C 1.38275 * 120.13967 * 179.97438 * 8 7 6 10 10 C 1.38124 * 120.06538 * 359.76531 * 9 8 7 11 11 C 1.38853 * 119.93439 * 0.49269 * 10 9 8 12 12 O 1.35752 * 120.07251 * 179.75929 * 11 10 9 13 13 C 1.34831 * 116.99810 * 354.25561 * 12 11 10 14 14 H 1.08005 * 119.99928 * 4.22101 * 13 12 11 15 15 C 1.38649 * 119.99961 * 184.22226 * 13 12 11 16 16 N 1.31557 * 120.00229 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46942 * 90.00411 * 17 15 13 19 19 H 1.48496 * 109.47466 * 209.99741 * 17 15 13 20 20 H 1.48497 * 109.46966 * 330.00411 * 17 15 13 21 21 C 1.38079 * 119.96618 * 90.00301 * 7 6 5 22 22 C 1.53000 * 109.46877 * 172.57303 * 3 2 1 23 23 H 1.08999 * 115.55196 * 92.15934 * 22 3 2 24 24 C 1.53003 * 117.49997 * 306.48858 * 22 3 2 25 25 C 1.53001 * 117.49926 * 237.86500 * 22 3 2 26 26 H 1.08997 * 117.50201 * 214.97700 * 25 22 3 27 27 C 1.53002 * 117.49671 * 0.02562 * 25 22 3 28 28 H 1.08997 * 109.47117 * 66.04018 * 1 2 3 29 29 H 1.09001 * 109.47256 * 186.03612 * 1 2 3 30 30 H 1.08998 * 109.47021 * 306.03850 * 1 2 3 31 31 H 1.09000 * 109.46684 * 240.00395 * 2 1 3 32 32 H 1.08993 * 109.47490 * 120.00532 * 2 1 3 33 33 H 1.00903 * 110.99896 * 70.25779 * 5 3 2 34 34 H 1.08995 * 109.47348 * 66.96513 * 6 5 3 35 35 H 1.08998 * 109.46788 * 306.96637 * 6 5 3 36 36 H 1.08002 * 119.92963 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.96758 * 180.02562 * 9 8 7 38 38 H 1.08002 * 120.03096 * 180.27484 * 10 9 8 39 39 H 0.97002 * 120.00644 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.03789 * 359.97048 * 21 7 6 41 41 H 1.08998 * 117.49821 * 0.02562 * 24 22 3 42 42 H 1.09005 * 117.49928 * 144.99645 * 24 22 3 43 43 H 1.08999 * 109.46983 * 61.88692 * 27 25 22 44 44 H 1.08999 * 109.46866 * 181.88219 * 27 25 22 45 45 H 1.08993 * 109.46940 * 301.88066 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5722 1.9932 0.8160 5 7 1.7020 2.0814 -1.2789 6 6 2.1900 1.2831 -2.4114 7 6 1.9787 2.0476 -3.6928 8 6 0.7973 1.9018 -4.3975 9 6 0.5994 2.6019 -5.5734 10 6 1.5795 3.4529 -6.0454 11 6 2.7687 3.5973 -5.3432 12 8 3.7359 4.4293 -5.8072 13 6 3.5302 4.9942 -7.0140 14 1 2.5981 4.8313 -7.5347 15 6 4.5152 5.7842 -7.5867 16 7 5.6509 5.9822 -6.9527 17 14 4.2305 6.5663 -9.2590 18 1 3.6100 7.9037 -9.0808 19 1 5.5290 6.7133 -9.9643 20 1 3.3262 5.7039 -10.0612 21 6 2.9644 2.8929 -4.1622 22 6 3.5586 1.4466 0.1865 23 1 4.1451 1.4425 -0.7323 24 6 4.1247 0.6891 1.3893 25 6 4.1216 2.2191 1.3810 26 1 5.0787 2.7236 1.2484 27 6 3.1229 2.9281 2.2981 28 1 -0.3633 0.4173 -0.9391 29 1 -0.3634 -1.0220 0.1081 30 1 -0.3633 0.6046 0.8310 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.7085 2.2422 -1.3513 34 1 1.6423 0.3418 -2.4552 35 1 3.2528 1.0793 -2.2810 36 1 0.0275 1.2405 -4.0280 37 1 -0.3242 2.4863 -6.1211 38 1 1.4225 4.0029 -6.9616 39 1 6.3402 6.5346 -7.3534 40 1 3.8863 3.0069 -3.6113 41 1 3.4153 0.1876 2.0475 42 1 5.0836 0.1867 1.2618 43 1 2.4599 2.1914 2.7517 44 1 3.6631 3.4612 3.0804 45 1 2.5343 3.6366 1.7154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345076404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -5.710666 kcal Electronic energy + Delta-G solvation = -22676.503024 eV Core-core repulsion = 19466.244004 eV Total energy + Delta-G solvation = -3210.259021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86008 -40.10064 -38.39754 -36.65525 -34.30565 -33.42610 -31.44899 -30.59136 -29.45017 -27.66808 -27.13684 -25.55202 -23.37656 -23.19612 -22.43107 -21.40268 -19.86958 -19.33745 -18.73770 -17.48346 -16.80439 -16.53362 -16.29287 -16.05452 -15.71572 -15.50078 -15.19881 -14.99297 -14.58497 -14.31515 -14.16169 -13.89638 -13.65439 -13.53984 -13.27500 -12.99008 -12.94859 -12.79283 -12.45818 -12.38241 -12.30519 -12.21821 -12.13538 -12.05716 -11.66686 -11.40724 -11.15204 -10.89547 -10.79714 -10.57008 -9.64508 -9.21833 -8.95422 -8.45936 -6.14616 0.56328 0.77026 1.34538 1.44399 1.52530 2.18306 2.77738 2.88260 3.15019 3.41200 3.52346 3.77458 3.88180 4.03019 4.11501 4.15890 4.24583 4.29988 4.34617 4.37909 4.42642 4.48749 4.60875 4.62769 4.73188 4.77648 4.82891 4.90343 4.95103 5.01275 5.02726 5.11870 5.13923 5.17116 5.20343 5.24870 5.32613 5.40641 5.43222 5.49917 5.69158 5.75640 5.80802 6.04117 6.13616 6.28595 6.57599 6.98559 7.81062 8.77646 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.003389 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.023270 B = 8259.685557 C = 9314.355788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.156 4.156 3 C 0.122 3.878 4 H 0.093 0.907 5 N -0.684 5.684 6 C 0.110 3.890 7 C -0.033 4.033 8 C -0.183 4.183 9 C -0.071 4.071 10 C -0.246 4.246 11 C 0.111 3.889 12 O -0.236 6.236 13 C -0.414 4.414 14 H 0.101 0.899 15 C -0.024 4.024 16 N -0.923 5.923 17 Si 1.020 2.980 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.252 1.252 21 C -0.185 4.185 22 C -0.154 4.154 23 H 0.084 0.916 24 C -0.160 4.160 25 C -0.161 4.161 26 H 0.090 0.910 27 C -0.118 4.118 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.348 0.652 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -12.421 15.153 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.012 3.988 4 H 0.111 0.889 5 N -0.316 5.316 6 C -0.018 4.018 7 C -0.034 4.034 8 C -0.202 4.202 9 C -0.089 4.089 10 C -0.266 4.266 11 C 0.061 3.939 12 O -0.143 6.143 13 C -0.490 4.490 14 H 0.119 0.881 15 C -0.221 4.221 16 N -0.561 5.561 17 Si 0.839 3.161 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.176 1.176 21 C -0.205 4.205 22 C -0.173 4.173 23 H 0.102 0.898 24 C -0.198 4.198 25 C -0.179 4.179 26 H 0.108 0.892 27 C -0.175 4.175 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.882 -11.832 15.246 21.681 hybrid contribution 0.042 0.070 -1.010 1.013 sum -9.840 -11.762 14.236 20.924 Atomic orbital electron populations 1.21783 0.94914 1.02361 1.01902 1.22246 0.96704 0.97533 1.02991 1.21197 0.92629 0.93440 0.91522 0.88929 1.60404 1.21164 1.49135 1.00871 1.20769 1.00846 0.93614 0.86564 1.19623 0.92866 0.95093 0.95831 1.20971 0.97927 1.04419 0.96873 1.21129 0.97864 0.93924 0.95966 1.21287 0.95434 1.06412 1.03440 1.19916 0.89299 0.90358 0.94277 1.83944 1.41252 1.53858 1.35208 1.21835 1.03896 1.29616 0.93662 0.88141 1.26607 0.94012 0.97391 1.04134 1.70196 1.06817 1.38525 1.40567 0.84579 0.78471 0.78566 0.74527 1.18776 1.19566 1.17588 1.20178 1.01517 1.02226 0.96563 1.22368 0.95936 1.05964 0.93047 0.89814 1.23179 1.02712 0.93516 1.00359 1.22424 1.00834 0.94357 1.00292 0.89190 1.21323 0.97930 1.00119 0.98133 0.93085 0.91883 0.92066 0.92044 0.90518 0.83222 0.91923 0.91253 0.83537 0.83658 0.86539 0.91900 0.88337 0.87268 0.88773 0.91381 0.91692 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.60 71.98 0.69 -1.32 16 2 C -0.16 -2.42 4.97 30.60 0.15 -2.26 16 3 C 0.12 2.35 2.65 44.92 0.12 2.47 16 4 H 0.09 1.68 5.87 -2.39 -0.01 1.67 16 5 N -0.68 -16.60 6.30 -495.59 -3.12 -19.72 16 6 C 0.11 2.93 4.86 85.56 0.42 3.35 16 7 C -0.03 -1.16 5.45 -19.88 -0.11 -1.26 16 8 C -0.18 -5.65 9.70 22.30 0.22 -5.43 16 9 C -0.07 -2.45 10.04 22.25 0.22 -2.22 16 10 C -0.25 -11.04 9.16 22.39 0.21 -10.83 16 11 C 0.11 5.80 6.65 22.58 0.15 5.95 16 12 O -0.24 -14.77 9.76 -22.77 -0.22 -15.00 16 13 C -0.41 -24.87 9.49 67.92 0.64 -24.23 16 14 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 15 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 16 N -0.92 -58.16 13.67 21.61 0.30 -57.86 16 17 Si 1.02 43.84 29.55 68.60 2.03 45.86 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 21 C -0.18 -8.37 9.65 22.39 0.22 -8.15 16 22 C -0.15 -3.37 5.17 -10.79 -0.06 -3.42 16 23 H 0.08 2.25 6.39 -2.39 -0.02 2.23 16 24 C -0.16 -2.73 9.26 30.60 0.28 -2.45 16 25 C -0.16 -3.27 6.41 -10.79 -0.07 -3.33 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 C -0.12 -2.02 8.68 71.98 0.62 -1.40 16 28 H 0.05 0.71 7.39 -2.39 -0.02 0.69 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 31 H 0.06 1.07 6.05 -2.39 -0.01 1.05 16 32 H 0.08 1.05 6.64 -2.39 -0.02 1.03 16 33 H 0.35 7.62 7.88 -89.69 -0.71 6.92 16 34 H 0.06 1.38 6.43 -2.39 -0.02 1.36 16 35 H 0.07 1.99 6.12 -2.39 -0.01 1.97 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 38 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.11 1.49 7.05 -2.39 -0.02 1.47 16 42 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.07 0.95 7.61 -2.39 -0.02 0.93 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.04 7.77 -2.39 -0.02 1.03 16 Total: -1.00 -71.74 357.05 3.44 -68.31 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.28 Total: 33.92 kcal Atomic # 6 Polarization: -59.68 SS G_CDS: 4.17 Total: -55.51 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -2.83 Total: -77.58 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.22 Total: -15.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -71.74 3.44 -68.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345076404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.596 kcal (2) G-P(sol) polarization free energy of solvation -71.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds