Wall clock time and date at job start Tue Mar 31 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.46968 * 2 1 4 4 H 1.08995 * 109.47579 * 55.06624 * 3 2 1 5 5 N 1.46906 * 109.47161 * 295.06319 * 3 2 1 6 6 C 1.46891 * 111.00032 * 155.39397 * 5 3 2 7 7 C 1.50706 * 109.47125 * 186.17145 * 6 5 3 8 8 C 1.38319 * 119.96498 * 89.99781 * 7 6 5 9 9 C 1.38276 * 120.13819 * 180.02562 * 8 7 6 10 10 C 1.38122 * 120.06932 * 359.97438 * 9 8 7 11 11 C 1.38859 * 119.92951 * 0.02562 * 10 9 8 12 12 O 1.35753 * 120.06907 * 180.02562 * 11 10 9 13 13 C 1.34834 * 117.00143 * 5.49453 * 12 11 10 14 14 H 1.07999 * 119.99468 * 5.15800 * 13 12 11 15 15 C 1.38648 * 119.99866 * 185.15700 * 13 12 11 16 16 N 1.31554 * 120.00423 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47230 * 59.99894 * 17 15 13 19 19 H 1.48498 * 109.47393 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47370 * 300.00032 * 17 15 13 21 21 C 1.38073 * 119.96308 * 269.72436 * 7 6 5 22 22 C 1.53005 * 109.47049 * 175.06537 * 3 2 1 23 23 H 1.08998 * 115.55122 * 332.14803 * 22 3 2 24 24 C 1.53004 * 117.49857 * 117.81589 * 22 3 2 25 25 C 1.53008 * 117.49714 * 186.47631 * 22 3 2 26 26 H 1.08997 * 117.49611 * 0.02562 * 25 22 3 27 27 C 1.53001 * 117.49581 * 144.99963 * 25 22 3 28 28 H 1.08995 * 109.47581 * 305.01118 * 1 2 3 29 29 H 1.09003 * 109.47349 * 65.00790 * 1 2 3 30 30 H 1.09003 * 109.47128 * 185.01143 * 1 2 3 31 31 H 1.09003 * 109.47420 * 239.99482 * 2 1 3 32 32 H 1.08998 * 109.47241 * 119.99507 * 2 1 3 33 33 H 1.00900 * 111.00054 * 279.34869 * 5 3 2 34 34 H 1.09007 * 109.47255 * 306.16684 * 6 5 3 35 35 H 1.09001 * 109.47599 * 66.16618 * 6 5 3 36 36 H 1.08003 * 119.93449 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.96657 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.03639 * 180.02562 * 10 9 8 39 39 H 0.96996 * 120.00161 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.03835 * 0.02562 * 21 7 6 41 41 H 1.08995 * 117.49878 * 214.98030 * 24 22 3 42 42 H 1.08998 * 117.49734 * 0.02562 * 24 22 3 43 43 H 1.08995 * 109.47124 * 59.99616 * 27 25 22 44 44 H 1.08999 * 109.47066 * 179.97438 * 27 25 22 45 45 H 1.09003 * 109.47110 * 300.00062 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6062 1.9812 0.8424 5 7 1.6499 2.0997 -1.2546 6 6 1.5803 3.5573 -1.0858 7 6 1.0335 4.1830 -2.3431 8 6 -0.3299 4.3666 -2.4868 9 6 -0.8355 4.9399 -3.6391 10 6 0.0201 5.3316 -4.6502 11 6 1.3893 5.1486 -4.5089 12 8 2.2328 5.5330 -5.5006 13 6 1.6899 6.1886 -6.5463 14 1 0.6444 6.4592 -6.5300 15 6 2.4737 6.5154 -7.6422 16 7 3.7472 6.1864 -7.6618 17 14 1.7216 7.4244 -9.0905 18 1 1.1852 8.7306 -8.6308 19 1 2.7618 7.6536 -10.1253 20 1 0.6200 6.6122 -9.6668 21 6 1.8945 4.5776 -3.3478 22 6 3.5649 1.4443 0.1241 23 1 3.9952 0.5889 0.6449 24 6 4.3671 2.0437 -1.0327 25 6 4.2582 2.7975 0.2952 26 1 3.6278 3.6864 0.3198 27 6 5.5024 2.8464 1.1843 28 1 -0.3634 0.5896 0.8416 29 1 -0.3634 0.4342 -0.9314 30 1 -0.3633 -1.0238 0.0898 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.2793 1.8521 -2.0034 34 1 0.9258 3.7951 -0.2473 35 1 2.5787 3.9485 -0.8898 36 1 -1.0010 4.0608 -1.6978 37 1 -1.9006 5.0816 -3.7486 38 1 -0.3754 5.7797 -5.5498 39 1 4.2955 6.4147 -8.4287 40 1 2.9592 4.4377 -3.2333 41 1 5.3253 1.5830 -1.2726 42 1 3.8084 2.4372 -1.8819 43 1 6.2649 2.1813 0.7790 44 1 5.8881 3.8654 1.2138 45 1 5.2408 2.5271 2.1932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345076405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:07 Heat of formation + Delta-G solvation = 14.884071 kcal Electronic energy + Delta-G solvation = -22819.810451 eV Core-core repulsion = 19610.444485 eV Total energy + Delta-G solvation = -3209.365966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69628 -38.81099 -36.60196 -35.00452 -33.01466 -32.23025 -30.20697 -29.08419 -28.40471 -26.48391 -25.33804 -24.18628 -22.15876 -21.56595 -20.83367 -20.23016 -19.88570 -17.59295 -17.05368 -16.59468 -15.42500 -15.03256 -14.82784 -14.46325 -14.36767 -13.96134 -13.66787 -13.50699 -13.41990 -13.19090 -13.12079 -12.52521 -12.44061 -12.23347 -11.90043 -11.75162 -11.59180 -11.58367 -11.31667 -11.26161 -11.10672 -10.83662 -10.73318 -10.60738 -10.57110 -10.36520 -10.09537 -9.73010 -9.34177 -8.80990 -8.29213 -7.99982 -7.19048 -6.42242 -4.01447 2.14913 2.43360 3.14715 3.15585 3.18265 3.61502 3.98649 4.27753 4.44721 4.69622 4.77931 4.84562 5.03452 5.06666 5.13860 5.17832 5.21772 5.28456 5.36642 5.55057 5.58659 5.62668 5.65773 5.69503 5.78923 5.81379 5.84940 5.89561 5.98590 6.00915 6.01112 6.11510 6.21692 6.22305 6.24274 6.37092 6.43751 6.70024 6.94796 7.10513 7.15811 7.31688 7.42531 7.46603 7.54746 7.86826 8.02673 9.03611 9.74393 10.75936 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.003622 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.912856 B = 7728.901085 C = 8668.674398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C 0.116 3.884 4 H 0.079 0.921 5 N -0.675 5.675 6 C 0.096 3.904 7 C -0.043 4.043 8 C -0.189 4.189 9 C -0.077 4.077 10 C -0.232 4.232 11 C 0.153 3.847 12 O -0.180 6.180 13 C -0.391 4.391 14 H 0.090 0.910 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.186 4.186 22 C -0.179 4.179 23 H 0.103 0.897 24 C -0.181 4.181 25 C -0.160 4.160 26 H 0.109 0.891 27 C -0.121 4.121 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.347 0.653 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.270 0.730 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 -8.528 15.390 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C 0.005 3.995 4 H 0.097 0.903 5 N -0.308 5.308 6 C -0.032 4.032 7 C -0.044 4.044 8 C -0.209 4.209 9 C -0.096 4.096 10 C -0.251 4.251 11 C 0.099 3.901 12 O -0.084 6.084 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.500 5.500 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.206 4.206 22 C -0.199 4.199 23 H 0.121 0.879 24 C -0.219 4.219 25 C -0.178 4.178 26 H 0.127 0.873 27 C -0.178 4.178 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.348 -8.622 15.288 17.708 hybrid contribution 0.555 0.695 -0.826 1.214 sum -1.792 -7.927 14.462 16.589 Atomic orbital electron populations 1.21648 0.95320 1.00352 1.02709 1.21439 0.96546 0.95086 1.01321 1.21205 0.89757 0.95652 0.92848 0.90339 1.60665 1.56497 1.07386 1.06279 1.21051 0.99277 0.87225 0.95647 1.19167 0.93342 0.97611 0.94289 1.20403 0.94170 1.07354 0.98943 1.20741 0.98225 0.97164 0.93441 1.21184 0.93284 1.09404 1.01244 1.19321 0.89420 0.92077 0.89257 1.83988 1.33427 1.64413 1.26548 1.21254 0.96502 1.34139 0.94892 0.89243 1.25258 0.95437 0.97680 0.98082 1.70024 1.05309 1.44042 1.30583 0.85806 0.78507 0.79525 0.79743 1.19539 1.20305 1.19527 1.20009 0.98998 1.08207 0.93339 1.23397 0.95977 0.97081 1.03447 0.87893 1.23315 1.01995 1.04007 0.92542 1.22647 1.00120 0.95891 0.99098 0.87306 1.21352 0.95789 1.01979 0.98707 0.93483 0.91244 0.93785 0.91935 0.92361 0.83073 0.90844 0.93844 0.87732 0.87593 0.85732 0.92046 0.87064 0.88714 0.88041 0.92722 0.92169 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.74 37.15 0.36 -1.08 16 2 C -0.11 -1.03 5.56 -26.74 -0.15 -1.18 16 3 C 0.12 1.23 2.42 -67.71 -0.16 1.06 16 4 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 5 N -0.67 -8.66 5.56 -107.99 -0.60 -9.26 16 6 C 0.10 1.34 4.87 -4.98 -0.02 1.32 16 7 C -0.04 -0.77 5.44 -104.65 -0.57 -1.34 16 8 C -0.19 -3.34 9.70 -39.54 -0.38 -3.73 16 9 C -0.08 -1.46 10.04 -39.61 -0.40 -1.85 16 10 C -0.23 -5.12 9.14 -39.39 -0.36 -5.48 16 11 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 12 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 13 C -0.39 -11.04 9.45 30.88 0.29 -10.75 16 14 H 0.09 2.34 5.28 -52.49 -0.28 2.06 16 15 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 17 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.19 -3.90 9.64 -39.40 -0.38 -4.28 16 22 C -0.18 -1.82 5.45 -90.61 -0.49 -2.31 16 23 H 0.10 0.97 8.06 -51.93 -0.42 0.55 16 24 C -0.18 -2.06 8.87 -26.69 -0.24 -2.30 16 25 C -0.16 -1.70 5.52 -90.57 -0.50 -2.19 16 26 H 0.11 1.24 5.72 -51.93 -0.30 0.95 16 27 C -0.12 -1.11 10.19 37.16 0.38 -0.73 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.35 4.76 6.23 -39.29 -0.24 4.51 16 34 H 0.07 0.96 7.85 -51.92 -0.41 0.55 16 35 H 0.04 0.60 4.49 -51.93 -0.23 0.36 16 36 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.12 2.76 5.71 -52.48 -0.30 2.46 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 40 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 42 H 0.10 1.32 5.33 -51.93 -0.28 1.04 16 43 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -29.55 359.59 -9.46 -39.01 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.03 Total: 9.48 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -2.98 Total: -30.40 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.16 Total: -33.98 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.55 -9.46 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345076405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.891 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds