Wall clock time and date at job start Tue Mar 31 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 H 1.09007 * 109.47042 * 305.54051 * 3 2 1 5 5 N 1.46906 * 109.46796 * 185.54880 * 3 2 1 6 6 C 1.46901 * 111.00080 * 88.96424 * 5 3 2 7 7 C 1.50697 * 109.47123 * 175.14581 * 6 5 3 8 8 C 1.38329 * 119.96677 * 89.99681 * 7 6 5 9 9 C 1.38277 * 120.13878 * 180.02562 * 8 7 6 10 10 C 1.38127 * 120.06742 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.92870 * 0.02562 * 10 9 8 12 12 O 1.35756 * 120.06218 * 179.97438 * 11 10 9 13 13 C 1.34824 * 117.00582 * 6.00394 * 12 11 10 14 14 H 1.08002 * 119.99803 * 5.35758 * 13 12 11 15 15 C 1.38656 * 120.00327 * 185.36191 * 13 12 11 16 16 N 1.31554 * 119.99942 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99815 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47104 * 90.00341 * 17 15 13 19 19 H 1.48505 * 109.46891 * 210.00121 * 17 15 13 20 20 H 1.48498 * 109.47268 * 330.00357 * 17 15 13 21 21 C 1.38071 * 119.96361 * 269.72481 * 7 6 5 22 22 C 1.52990 * 109.47403 * 65.54594 * 3 2 1 23 23 H 1.08997 * 115.55030 * 34.41849 * 22 3 2 24 24 C 1.53003 * 117.49866 * 248.74768 * 22 3 2 25 25 C 1.53001 * 117.49703 * 180.09134 * 22 3 2 26 26 H 1.09002 * 117.50141 * 359.97438 * 25 22 3 27 27 C 1.53007 * 117.49777 * 215.00368 * 25 22 3 28 28 H 1.08998 * 109.47640 * 294.92492 * 1 2 3 29 29 H 1.08997 * 109.47094 * 54.92669 * 1 2 3 30 30 H 1.09000 * 109.47309 * 174.92485 * 1 2 3 31 31 H 1.09002 * 109.47022 * 119.99582 * 2 1 3 32 32 H 1.09003 * 109.47393 * 239.99108 * 2 1 3 33 33 H 1.00901 * 110.99294 * 212.90793 * 5 3 2 34 34 H 1.09007 * 109.46890 * 295.14407 * 6 5 3 35 35 H 1.08993 * 109.47495 * 55.13993 * 6 5 3 36 36 H 1.08000 * 119.92632 * 0.02562 * 8 7 6 37 37 H 1.08001 * 119.96587 * 179.97438 * 9 8 7 38 38 H 1.07996 * 120.03090 * 180.02562 * 10 9 8 39 39 H 0.96998 * 119.99905 * 179.97438 * 16 15 13 40 40 H 1.08001 * 120.03674 * 0.02562 * 21 7 6 41 41 H 1.08999 * 117.49708 * 0.02562 * 24 22 3 42 42 H 1.09000 * 117.49768 * 145.02109 * 24 22 3 43 43 H 1.08997 * 109.47169 * 59.99632 * 27 25 22 44 44 H 1.08992 * 109.47105 * 180.02562 * 27 25 22 45 45 H 1.09000 * 109.46950 * 299.99573 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 -0.8363 5 7 3.5029 1.4446 -0.1339 6 6 3.9021 1.4647 -1.5475 7 6 5.4011 1.5865 -1.6445 8 6 6.1860 0.4480 -1.6783 9 6 7.5618 0.5557 -1.7667 10 6 8.1564 1.8012 -1.8220 11 6 7.3711 2.9458 -1.7883 12 8 7.9526 4.1713 -1.8420 13 6 9.2838 4.2086 -2.0525 14 1 9.8241 3.2958 -2.2558 15 6 9.9593 5.4187 -2.0079 16 7 11.2581 5.4550 -2.2138 17 14 9.0247 6.9975 -1.6569 18 1 8.9983 7.2420 -0.1925 19 1 9.6987 8.1332 -2.3363 20 1 7.6342 6.8727 -2.1630 21 6 5.9891 2.8343 -1.7051 22 6 1.6470 2.1224 1.3130 23 1 1.6429 1.4789 2.1927 24 6 0.5986 3.2348 1.2464 25 6 2.0668 3.5809 1.5065 26 1 2.6234 4.0559 0.6985 27 6 2.4487 4.0245 2.9202 28 1 -0.3634 0.4331 0.9319 29 1 -0.3633 0.5905 -0.8410 30 1 -0.3634 -1.0236 -0.0909 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 3.9108 2.2191 0.3680 34 1 3.5807 0.5411 -2.0290 35 1 3.4356 2.3150 -2.0448 36 1 5.7234 -0.5269 -1.6356 37 1 8.1720 -0.3350 -1.7925 38 1 9.2309 1.8846 -1.8915 39 1 11.7305 6.3016 -2.1830 40 1 5.3754 3.7228 -1.6827 41 1 0.1886 3.4819 0.2672 42 1 -0.0950 3.3233 2.0825 43 1 3.2941 3.4325 3.2708 44 1 2.7233 5.0792 2.9082 45 1 1.6003 3.8779 3.5886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345076406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:10 Heat of formation + Delta-G solvation = 5.195297 kcal Electronic energy + Delta-G solvation = -22561.604539 eV Core-core repulsion = 19351.818437 eV Total energy + Delta-G solvation = -3209.786103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.41886 -38.92944 -36.95679 -35.35201 -33.09557 -32.37172 -30.38898 -29.29962 -28.68960 -26.26663 -25.18005 -23.91327 -22.39394 -21.65565 -20.94488 -20.48555 -20.01967 -17.71936 -17.22877 -16.03218 -15.41678 -15.18001 -14.96074 -14.86112 -14.25255 -14.09920 -13.85008 -13.76998 -13.55725 -13.18782 -13.13216 -12.65260 -12.46837 -12.38683 -12.19365 -11.93092 -11.69772 -11.63229 -11.58019 -11.34591 -11.24835 -10.83676 -10.79178 -10.67412 -10.60597 -10.23507 -10.13514 -9.86396 -9.41047 -8.87156 -8.42447 -8.11410 -7.36047 -6.41123 -4.07909 2.02595 2.29559 3.21340 3.24975 3.39363 3.50572 4.15207 4.23621 4.38307 4.56303 4.65619 4.78362 4.81689 5.01396 5.05543 5.09714 5.13613 5.21886 5.24068 5.39077 5.44556 5.47072 5.57597 5.60474 5.65183 5.69236 5.75998 5.83795 5.89991 5.91956 5.92758 6.00178 6.08327 6.12940 6.14005 6.23984 6.27352 6.53949 6.79286 7.08217 7.12618 7.26460 7.33054 7.47915 7.61633 7.80718 8.04722 8.94434 9.57328 10.66846 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.003790 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.686153 B = 7385.380914 C = 8694.052969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.116 3.884 4 H 0.044 0.956 5 N -0.679 5.679 6 C 0.106 3.894 7 C -0.051 4.051 8 C -0.180 4.180 9 C -0.079 4.079 10 C -0.217 4.217 11 C 0.158 3.842 12 O -0.220 6.220 13 C -0.389 4.389 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.185 4.185 22 C -0.146 4.146 23 H 0.108 0.892 24 C -0.172 4.172 25 C -0.155 4.155 26 H 0.102 0.898 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.347 0.653 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.279 0.721 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.148 -7.241 5.915 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.007 3.993 4 H 0.062 0.938 5 N -0.311 5.311 6 C -0.022 4.022 7 C -0.051 4.051 8 C -0.199 4.199 9 C -0.097 4.097 10 C -0.237 4.237 11 C 0.106 3.894 12 O -0.125 6.125 13 C -0.464 4.464 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.205 4.205 22 C -0.165 4.165 23 H 0.126 0.874 24 C -0.210 4.210 25 C -0.173 4.173 26 H 0.120 0.880 27 C -0.179 4.179 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.978 -7.543 5.967 22.173 hybrid contribution -0.208 1.576 -0.140 1.596 sum -20.186 -5.967 5.827 21.842 Atomic orbital electron populations 1.21758 0.96070 1.01217 1.01733 1.21473 0.94677 0.95833 1.02612 1.21182 0.88156 0.95728 0.94270 0.93825 1.60563 1.07536 1.51415 1.11558 1.20867 0.91858 1.00527 0.88960 1.19185 0.93804 0.92563 0.99575 1.20492 0.93372 0.97066 1.08968 1.20811 0.94483 0.96509 0.97891 1.21317 1.01023 0.92011 1.09324 1.19047 0.91685 0.85285 0.93346 1.83580 1.24637 1.24440 1.79856 1.20753 0.79215 0.97454 1.49006 0.87707 1.24456 0.94985 0.98625 0.95930 1.69646 1.06776 1.27834 1.47651 0.86190 0.80633 0.81195 0.78928 1.19910 1.20785 1.18440 1.20017 0.92013 0.96807 1.11660 1.22607 1.03735 0.90725 0.99400 0.87427 1.23168 0.91899 1.03101 1.02807 1.22386 0.97653 0.97943 0.99321 0.88011 1.21351 1.01379 1.01442 0.93746 0.92610 0.93128 0.92959 0.91419 0.91947 0.83285 0.90608 0.94895 0.87377 0.87192 0.85035 0.91083 0.87042 0.89058 0.88849 0.91830 0.92111 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.65 37.16 0.36 -0.83 16 2 C -0.11 -1.03 5.66 -26.73 -0.15 -1.18 16 3 C 0.12 1.20 2.30 -67.71 -0.16 1.05 16 4 H 0.04 0.47 7.42 -51.93 -0.39 0.08 16 5 N -0.68 -8.58 6.35 -107.99 -0.69 -9.27 16 6 C 0.11 1.45 5.69 -4.98 -0.03 1.42 16 7 C -0.05 -0.86 5.34 -104.65 -0.56 -1.42 16 8 C -0.18 -3.06 9.70 -39.53 -0.38 -3.44 16 9 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 10 C -0.22 -4.73 9.13 -39.39 -0.36 -5.09 16 11 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 12 O -0.22 -5.82 8.59 0.05 0.00 -5.82 16 13 C -0.39 -11.01 9.90 30.89 0.31 -10.70 16 14 H 0.11 3.04 5.53 -52.49 -0.29 2.75 16 15 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 16 N -0.88 -25.57 13.96 55.48 0.77 -24.80 16 17 Si 0.90 21.75 28.62 -169.99 -4.86 16.89 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.19 -3.66 9.64 -39.40 -0.38 -4.04 16 22 C -0.15 -1.38 4.07 -90.62 -0.37 -1.75 16 23 H 0.11 1.02 8.11 -51.93 -0.42 0.60 16 24 C -0.17 -1.47 9.83 -26.69 -0.26 -1.73 16 25 C -0.15 -1.51 5.30 -90.58 -0.48 -1.99 16 26 H 0.10 1.11 7.95 -51.93 -0.41 0.69 16 27 C -0.12 -1.11 10.19 37.16 0.38 -0.73 16 28 H 0.05 0.42 7.56 -51.93 -0.39 0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 33 H 0.35 4.67 7.32 -39.29 -0.29 4.39 16 34 H 0.08 0.96 7.68 -51.92 -0.40 0.56 16 35 H 0.03 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.13 3.01 5.72 -52.49 -0.30 2.71 16 39 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.09 0.76 8.05 -51.93 -0.42 0.35 16 42 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -28.68 367.50 -9.54 -38.22 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.46 Total: 6.45 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.84 Total: -27.20 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.09 Total: -34.06 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: 0.00 Total: -5.82 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.68 -9.54 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345076406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.411 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds