Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 H 1.09007 * 109.47042 * 305.54051 * 3 2 1 5 5 N 1.46906 * 109.46796 * 185.54880 * 3 2 1 6 6 C 1.46901 * 111.00080 * 88.96424 * 5 3 2 7 7 C 1.50697 * 109.47123 * 175.14581 * 6 5 3 8 8 C 1.38329 * 119.96677 * 89.99681 * 7 6 5 9 9 C 1.38277 * 120.13878 * 180.02562 * 8 7 6 10 10 C 1.38127 * 120.06742 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.92870 * 0.02562 * 10 9 8 12 12 O 1.35756 * 120.06218 * 179.97438 * 11 10 9 13 13 C 1.34824 * 117.00582 * 6.00394 * 12 11 10 14 14 H 1.08002 * 119.99803 * 5.35758 * 13 12 11 15 15 C 1.38656 * 120.00327 * 185.36191 * 13 12 11 16 16 N 1.31554 * 119.99942 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99815 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47104 * 90.00341 * 17 15 13 19 19 H 1.48505 * 109.46891 * 210.00121 * 17 15 13 20 20 H 1.48498 * 109.47268 * 330.00357 * 17 15 13 21 21 C 1.38071 * 119.96361 * 269.72481 * 7 6 5 22 22 C 1.52990 * 109.47403 * 65.54594 * 3 2 1 23 23 H 1.08997 * 115.55030 * 34.41849 * 22 3 2 24 24 C 1.53003 * 117.49866 * 248.74768 * 22 3 2 25 25 C 1.53001 * 117.49703 * 180.09134 * 22 3 2 26 26 H 1.09002 * 117.50141 * 359.97438 * 25 22 3 27 27 C 1.53007 * 117.49777 * 215.00368 * 25 22 3 28 28 H 1.08998 * 109.47640 * 294.92492 * 1 2 3 29 29 H 1.08997 * 109.47094 * 54.92669 * 1 2 3 30 30 H 1.09000 * 109.47309 * 174.92485 * 1 2 3 31 31 H 1.09002 * 109.47022 * 119.99582 * 2 1 3 32 32 H 1.09003 * 109.47393 * 239.99108 * 2 1 3 33 33 H 1.00901 * 110.99294 * 212.90793 * 5 3 2 34 34 H 1.09007 * 109.46890 * 295.14407 * 6 5 3 35 35 H 1.08993 * 109.47495 * 55.13993 * 6 5 3 36 36 H 1.08000 * 119.92632 * 0.02562 * 8 7 6 37 37 H 1.08001 * 119.96587 * 179.97438 * 9 8 7 38 38 H 1.07996 * 120.03090 * 180.02562 * 10 9 8 39 39 H 0.96998 * 119.99905 * 179.97438 * 16 15 13 40 40 H 1.08001 * 120.03674 * 0.02562 * 21 7 6 41 41 H 1.08999 * 117.49708 * 0.02562 * 24 22 3 42 42 H 1.09000 * 117.49768 * 145.02109 * 24 22 3 43 43 H 1.08997 * 109.47169 * 59.99632 * 27 25 22 44 44 H 1.08992 * 109.47105 * 180.02562 * 27 25 22 45 45 H 1.09000 * 109.46950 * 299.99573 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 -0.8363 5 7 3.5029 1.4446 -0.1339 6 6 3.9021 1.4647 -1.5475 7 6 5.4011 1.5865 -1.6445 8 6 6.1860 0.4480 -1.6783 9 6 7.5618 0.5557 -1.7667 10 6 8.1564 1.8012 -1.8220 11 6 7.3711 2.9458 -1.7883 12 8 7.9526 4.1713 -1.8420 13 6 9.2838 4.2086 -2.0525 14 1 9.8241 3.2958 -2.2558 15 6 9.9593 5.4187 -2.0079 16 7 11.2581 5.4550 -2.2138 17 14 9.0247 6.9975 -1.6569 18 1 8.9983 7.2420 -0.1925 19 1 9.6987 8.1332 -2.3363 20 1 7.6342 6.8727 -2.1630 21 6 5.9891 2.8343 -1.7051 22 6 1.6470 2.1224 1.3130 23 1 1.6429 1.4789 2.1927 24 6 0.5986 3.2348 1.2464 25 6 2.0668 3.5809 1.5065 26 1 2.6234 4.0559 0.6985 27 6 2.4487 4.0245 2.9202 28 1 -0.3634 0.4331 0.9319 29 1 -0.3633 0.5905 -0.8410 30 1 -0.3634 -1.0236 -0.0909 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 3.9108 2.2191 0.3680 34 1 3.5807 0.5411 -2.0290 35 1 3.4356 2.3150 -2.0448 36 1 5.7234 -0.5269 -1.6356 37 1 8.1720 -0.3350 -1.7925 38 1 9.2309 1.8846 -1.8915 39 1 11.7305 6.3016 -2.1830 40 1 5.3754 3.7228 -1.6827 41 1 0.1886 3.4819 0.2672 42 1 -0.0950 3.3233 2.0825 43 1 3.2941 3.4325 3.2708 44 1 2.7233 5.0792 2.9082 45 1 1.6003 3.8779 3.5886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345076406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = -9.892222 kcal Electronic energy + Delta-G solvation = -22562.258783 eV Core-core repulsion = 19351.818437 eV Total energy + Delta-G solvation = -3210.440346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95241 -39.93210 -38.53540 -36.34539 -34.48609 -34.02609 -31.70163 -30.87036 -29.47981 -27.49362 -26.97807 -24.95994 -23.27102 -23.14168 -22.03430 -21.66577 -20.83736 -19.66203 -18.91698 -17.11672 -16.85870 -16.50445 -16.21820 -15.90509 -15.77001 -15.52180 -15.18307 -15.07486 -14.57185 -14.34914 -14.26467 -14.03178 -13.87696 -13.77044 -13.19393 -13.08799 -12.96477 -12.67061 -12.48038 -12.45418 -12.34820 -12.31045 -12.08011 -12.01394 -11.90346 -11.46306 -11.30373 -10.99904 -10.91525 -10.59441 -9.76108 -9.30065 -9.07610 -8.51169 -6.23826 0.47285 0.69300 1.29451 1.33786 1.49875 2.26559 2.66984 2.80274 3.04768 3.08169 3.43762 3.63081 3.86844 3.96291 4.06274 4.08566 4.23093 4.31443 4.34334 4.39833 4.44269 4.52150 4.59163 4.62878 4.68790 4.71987 4.80077 4.90296 4.91598 4.94610 4.95873 5.07569 5.20180 5.24159 5.26003 5.31430 5.37554 5.39591 5.41005 5.53403 5.66721 5.74948 5.76252 5.90591 6.12701 6.25452 6.42934 6.83347 7.58109 8.60773 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.003790 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.686153 B = 7385.380914 C = 8694.052969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C 0.118 3.882 4 H 0.044 0.956 5 N -0.683 5.683 6 C 0.112 3.888 7 C -0.041 4.041 8 C -0.160 4.160 9 C -0.077 4.077 10 C -0.237 4.237 11 C 0.120 3.880 12 O -0.246 6.246 13 C -0.398 4.398 14 H 0.080 0.920 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.266 1.266 20 H -0.264 1.264 21 C -0.184 4.184 22 C -0.145 4.145 23 H 0.109 0.891 24 C -0.158 4.158 25 C -0.167 4.167 26 H 0.087 0.913 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.341 0.659 34 H 0.095 0.905 35 H 0.038 0.962 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.285 0.715 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.521 -8.416 6.519 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C 0.009 3.991 4 H 0.062 0.938 5 N -0.315 5.315 6 C -0.016 4.016 7 C -0.041 4.041 8 C -0.179 4.179 9 C -0.095 4.095 10 C -0.257 4.257 11 C 0.071 3.929 12 O -0.154 6.154 13 C -0.475 4.475 14 H 0.097 0.903 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.188 1.188 21 C -0.204 4.204 22 C -0.164 4.164 23 H 0.127 0.873 24 C -0.195 4.195 25 C -0.186 4.186 26 H 0.105 0.895 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.382 -8.760 6.573 25.820 hybrid contribution 0.663 1.647 -0.314 1.803 sum -22.719 -7.113 6.259 24.616 Atomic orbital electron populations 1.21718 0.94761 1.01840 1.02021 1.21445 0.95781 0.94871 1.02179 1.21232 0.86598 0.96543 0.94732 0.93830 1.60608 1.09126 1.51129 1.10605 1.20859 0.89068 1.01779 0.89940 1.19601 0.95976 0.91366 0.97189 1.20982 0.92684 0.98686 1.05557 1.21145 0.95696 0.95984 0.96642 1.21335 1.00023 0.93477 1.10828 1.19578 0.93183 0.84806 0.95283 1.83517 1.23320 1.26244 1.82334 1.20691 0.80315 0.96989 1.49480 0.90282 1.25268 0.95855 1.01771 0.95905 1.69729 1.08156 1.28963 1.49637 0.85230 0.78972 0.77452 0.79135 1.19081 1.19085 1.18802 1.20262 0.90589 0.98557 1.11010 1.22550 1.04348 0.90518 0.98974 0.87298 1.23220 0.91295 1.01494 1.03502 1.22376 0.98784 0.98280 0.99156 0.89477 1.21336 1.01605 1.01133 0.93708 0.92240 0.92936 0.92195 0.91929 0.92261 0.84009 0.88707 0.94375 0.83713 0.84203 0.87505 0.90562 0.86311 0.88728 0.87497 0.92607 0.92344 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.65 71.98 0.69 -1.16 16 2 C -0.10 -1.68 5.66 30.59 0.17 -1.50 16 3 C 0.12 2.13 2.30 44.91 0.10 2.23 16 4 H 0.04 0.81 7.42 -2.38 -0.02 0.79 16 5 N -0.68 -15.46 6.35 -495.57 -3.15 -18.60 16 6 C 0.11 2.68 5.69 85.56 0.49 3.17 16 7 C -0.04 -1.28 5.34 -19.88 -0.11 -1.39 16 8 C -0.16 -4.91 9.70 22.30 0.22 -4.69 16 9 C -0.08 -2.69 10.04 22.25 0.22 -2.47 16 10 C -0.24 -10.63 9.13 22.39 0.20 -10.42 16 11 C 0.12 5.73 6.65 22.58 0.15 5.88 16 12 O -0.25 -13.61 8.59 -22.75 -0.20 -13.80 16 13 C -0.40 -23.84 9.90 67.92 0.67 -23.17 16 14 H 0.08 4.97 5.53 -2.91 -0.02 4.95 16 15 C 0.01 0.60 5.49 84.83 0.47 1.07 16 16 N -0.92 -55.79 13.96 21.61 0.30 -55.49 16 17 Si 0.97 45.93 28.62 68.60 1.96 47.89 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.18 -7.19 9.64 22.39 0.22 -6.97 16 22 C -0.15 -2.40 4.07 -10.80 -0.04 -2.45 16 23 H 0.11 1.80 8.11 -2.39 -0.02 1.78 16 24 C -0.16 -2.28 9.83 30.62 0.30 -1.97 16 25 C -0.17 -3.00 5.30 -10.77 -0.06 -3.06 16 26 H 0.09 1.82 7.95 -2.39 -0.02 1.80 16 27 C -0.12 -2.04 10.19 71.98 0.73 -1.31 16 28 H 0.06 0.72 7.56 -2.39 -0.02 0.70 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 0.99 7.73 -2.39 -0.02 0.97 16 33 H 0.34 8.55 7.32 -89.69 -0.66 7.90 16 34 H 0.09 1.97 7.68 -2.38 -0.02 1.96 16 35 H 0.04 0.90 7.87 -2.39 -0.02 0.88 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.11 5.27 5.72 -2.91 -0.02 5.25 16 39 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.09 1.32 8.05 -2.39 -0.02 1.30 16 42 H 0.11 1.28 8.05 -2.39 -0.02 1.26 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.07 0.94 7.90 -2.39 -0.02 0.92 16 Total: -1.00 -64.51 367.50 3.66 -60.84 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.31 Total: 27.39 kcal Atomic # 6 Polarization: -52.66 SS G_CDS: 4.43 Total: -48.22 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -2.84 Total: -74.10 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.20 Total: -13.80 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.96 Total: 47.89 kcal Total: -64.51 3.66 -60.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345076406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.953 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds