Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47035 * 2 1 4 4 H 1.09004 * 109.47289 * 305.00187 * 3 2 1 5 5 C 1.52999 * 109.47265 * 64.99925 * 3 2 1 6 6 C 1.52998 * 109.47296 * 185.00149 * 3 2 1 7 7 N 1.46501 * 109.47165 * 174.99769 * 6 3 2 8 8 C 1.46497 * 120.00413 * 270.00020 * 7 6 3 9 9 C 1.34775 * 119.99926 * 89.99926 * 7 6 3 10 10 O 1.21282 * 120.00185 * 2.73992 * 9 7 6 11 11 C 1.50698 * 120.00382 * 182.73925 * 9 7 6 12 12 H 1.08999 * 109.47188 * 315.83361 * 11 9 7 13 13 C 1.50700 * 109.47035 * 75.83048 * 11 9 7 14 14 H 1.08000 * 120.00210 * 28.37145 * 13 11 9 15 15 C 1.37880 * 120.00033 * 208.37384 * 13 11 9 16 16 N 1.31508 * 120.00295 * 1.68415 * 15 13 11 17 17 Si 1.86798 * 119.99885 * 181.68663 * 15 13 11 18 18 H 1.48503 * 109.47527 * 269.99666 * 17 15 13 19 19 H 1.48499 * 109.47388 * 29.99907 * 17 15 13 20 20 H 1.48506 * 109.47163 * 149.99728 * 17 15 13 21 21 C 1.50701 * 109.47577 * 195.83009 * 11 9 7 22 22 C 1.38232 * 120.00091 * 292.65095 * 21 11 9 23 23 C 1.38232 * 120.00193 * 179.78353 * 22 21 11 24 24 C 1.38241 * 119.99587 * 0.44670 * 23 22 21 25 25 C 1.38226 * 120.00233 * 359.80844 * 24 23 22 26 26 C 1.38239 * 120.00253 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46848 * 60.00239 * 1 2 3 28 28 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47418 * 299.99868 * 1 2 3 30 30 H 1.08999 * 109.47418 * 240.00131 * 2 1 3 31 31 H 1.08995 * 109.47291 * 119.99937 * 2 1 3 32 32 H 1.09005 * 109.47218 * 299.99850 * 5 3 2 33 33 H 1.08995 * 109.47242 * 60.00224 * 5 3 2 34 34 H 1.09002 * 109.47528 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47156 * 54.99890 * 6 3 2 36 36 H 1.09004 * 109.46864 * 294.99388 * 6 3 2 37 37 H 1.09006 * 109.46778 * 265.22845 * 8 7 6 38 38 H 1.09000 * 109.47021 * 25.22152 * 8 7 6 39 39 H 1.08992 * 109.47413 * 145.22681 * 8 7 6 40 40 H 0.97003 * 119.99536 * 354.58181 * 16 15 13 41 41 H 1.07998 * 119.99724 * 0.02562 * 22 21 11 42 42 H 1.08003 * 120.00335 * 180.26918 * 23 22 21 43 43 H 1.08001 * 119.99586 * 179.82944 * 24 23 22 44 44 H 1.08002 * 120.00406 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00566 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 7 4.0432 2.8239 -0.2459 8 6 4.1784 3.4398 -1.5682 9 6 4.3589 3.5263 0.8601 10 8 4.2945 3.0008 1.9513 11 6 4.7919 4.9649 0.7412 12 1 5.5009 5.0641 -0.0807 13 6 3.5882 5.8313 0.4735 14 1 2.6152 5.5296 0.8322 15 6 3.7292 7.0091 -0.2292 16 7 4.9080 7.3602 -0.6946 17 14 2.2456 8.1063 -0.5202 18 1 1.5837 7.7170 -1.7913 19 1 1.2878 7.9522 0.6041 20 1 2.6859 9.5220 -0.6049 21 6 5.4482 5.3999 2.0261 22 6 4.6993 5.5071 3.1830 23 6 5.3022 5.9019 4.3626 24 6 6.6523 6.1984 4.3832 25 6 7.4001 6.0963 3.2252 26 6 6.7981 5.6972 2.0465 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.5489 2.1253 1.3969 33 1 2.0698 1.5876 2.1491 34 1 1.9981 3.1544 1.3072 35 1 3.8570 0.8801 -1.0113 36 1 4.0029 0.9837 0.7597 37 1 5.2040 3.3252 -1.9192 38 1 3.4985 2.9526 -2.2672 39 1 3.9334 4.4998 -1.5020 40 1 5.6921 6.8321 -0.4772 41 1 3.6439 5.2787 3.1661 42 1 4.7180 5.9814 5.2675 43 1 7.1228 6.5094 5.3042 44 1 8.4548 6.3283 3.2412 45 1 7.3825 5.6170 1.1418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353546306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -34.545889 kcal Electronic energy + Delta-G solvation = -24134.218666 eV Core-core repulsion = 20922.709256 eV Total energy + Delta-G solvation = -3211.509410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59415 -38.10033 -36.35973 -34.35503 -33.81684 -30.91642 -30.02720 -29.81548 -27.56643 -26.51904 -25.61202 -23.87939 -22.93026 -21.63096 -20.72953 -19.71754 -18.54306 -17.18379 -16.14911 -15.98635 -15.25254 -15.12852 -14.82645 -14.21219 -13.96634 -13.83256 -13.57667 -13.16727 -12.98719 -12.74614 -12.45954 -12.28992 -12.14351 -12.07852 -11.78322 -11.64590 -11.51704 -11.48521 -11.08686 -10.92303 -10.83408 -10.60705 -10.38567 -10.34504 -10.27212 -10.22399 -10.10761 -8.98215 -8.75525 -8.54852 -8.02685 -7.92813 -7.67019 -6.56786 -4.31767 2.26678 2.32656 3.32514 3.37779 3.53288 3.62755 3.81476 4.38181 4.73824 5.00685 5.03221 5.13489 5.17096 5.35405 5.64614 5.67759 5.68906 5.70673 5.74062 5.77024 5.84779 5.87905 5.96224 6.06629 6.08446 6.12485 6.18201 6.21981 6.29215 6.38970 6.40072 6.47523 6.57035 6.62620 6.66294 6.86194 6.86325 6.98112 7.25611 7.28436 7.36773 7.60261 7.83735 7.93633 8.16276 8.22146 8.61407 9.15370 9.37600 10.80820 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.006399 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.311070 B = 4374.703537 C = 5504.746828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.106 4.106 4 H 0.068 0.932 5 C -0.139 4.139 6 C 0.121 3.879 7 N -0.616 5.616 8 C 0.077 3.923 9 C 0.535 3.465 10 O -0.558 6.558 11 C 0.044 3.956 12 H 0.062 0.938 13 C -0.581 4.581 14 H 0.057 0.943 15 C 0.032 3.968 16 N -0.896 5.896 17 Si 1.068 2.932 18 H -0.285 1.285 19 H -0.286 1.286 20 H -0.283 1.283 21 C -0.026 4.026 22 C -0.071 4.071 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.131 4.131 26 C -0.129 4.129 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -8.828 -0.069 9.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.125 4.125 4 H 0.087 0.913 5 C -0.196 4.196 6 C -0.003 4.003 7 N -0.349 5.349 8 C -0.066 4.066 9 C 0.327 3.673 10 O -0.436 6.436 11 C 0.023 3.977 12 H 0.080 0.920 13 C -0.619 4.619 14 H 0.075 0.925 15 C -0.174 4.174 16 N -0.530 5.530 17 Si 0.896 3.104 18 H -0.212 1.212 19 H -0.212 1.212 20 H -0.208 1.208 21 C -0.027 4.027 22 C -0.089 4.089 23 C -0.153 4.153 24 C -0.164 4.164 25 C -0.149 4.149 26 C -0.148 4.148 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.089 -7.709 -0.271 8.309 hybrid contribution 0.497 -1.302 0.648 1.537 sum -2.592 -9.011 0.377 9.384 Atomic orbital electron populations 1.21795 0.96028 1.01001 1.02025 1.21506 0.95855 0.96499 1.01550 1.21551 0.95978 0.95643 0.99350 0.91349 1.21815 0.99510 1.01931 0.96329 1.21397 0.93411 0.83713 1.01765 1.47717 1.67000 1.12975 1.07254 1.21876 0.99736 1.01858 0.83124 1.21234 0.74700 0.88592 0.82817 1.90570 1.54582 1.71682 1.26793 1.18182 0.98117 0.88845 0.92590 0.91997 1.21503 0.92611 1.07189 1.40572 0.92519 1.25818 1.02489 0.96344 0.92790 1.70779 0.99460 1.41524 1.41265 0.83542 0.74172 0.76341 0.76391 1.21190 1.21227 1.20840 1.20186 0.92042 0.94721 0.95735 1.20830 0.99692 0.96665 0.91710 1.21012 0.94879 1.01575 0.97819 1.20829 0.94532 1.03457 0.97537 1.20874 0.98859 1.01855 0.93305 1.20985 0.94805 1.01642 0.97328 0.92911 0.93223 0.92414 0.92388 0.92084 0.93821 0.92761 0.91699 0.91756 0.90530 0.94136 0.92528 0.87937 0.91570 0.86733 0.87426 0.87555 0.87451 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.12 -1.36 5.40 -26.73 -0.14 -1.51 16 3 C -0.11 -1.54 2.59 -90.62 -0.24 -1.78 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C -0.14 -2.34 7.74 37.16 0.29 -2.06 16 6 C 0.12 1.90 4.98 -4.04 -0.02 1.88 16 7 N -0.62 -11.53 2.76 -181.58 -0.50 -12.03 16 8 C 0.08 1.32 9.85 59.85 0.59 1.91 16 9 C 0.54 11.83 5.32 -10.99 -0.06 11.77 16 10 O -0.56 -13.28 13.27 5.56 0.07 -13.21 16 11 C 0.04 1.03 1.22 -94.08 -0.12 0.92 16 12 H 0.06 1.49 5.63 -51.93 -0.29 1.20 16 13 C -0.58 -14.54 6.09 -34.44 -0.21 -14.75 16 14 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 15 C 0.03 0.83 5.42 -17.82 -0.10 0.73 16 16 N -0.90 -24.23 13.61 55.43 0.75 -23.48 16 17 Si 1.07 23.48 29.90 -169.99 -5.08 18.40 16 18 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.03 -0.60 4.46 -104.62 -0.47 -1.07 16 22 C -0.07 -1.62 8.07 -39.59 -0.32 -1.94 16 23 C -0.13 -2.69 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 25 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 26 C -0.13 -2.79 9.67 -39.58 -0.38 -3.18 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.05 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.06 1.33 6.12 -51.93 -0.32 1.01 16 35 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.08 1.31 7.39 -51.93 -0.38 0.92 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 39 H 0.10 2.08 5.68 -51.93 -0.29 1.78 16 40 H 0.27 7.33 6.65 -40.82 -0.27 7.06 16 41 H 0.11 2.70 7.83 -52.49 -0.41 2.29 16 42 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.11 2.20 7.96 -52.49 -0.42 1.78 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -28.38 356.86 -8.72 -37.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.33 Total: 7.27 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.00 Total: -19.43 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.25 Total: -35.51 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.08 Total: 18.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.38 -8.72 -37.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353546306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.554 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds