Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47035 * 2 1 4 4 H 1.09004 * 109.47289 * 305.00187 * 3 2 1 5 5 C 1.52999 * 109.47265 * 64.99925 * 3 2 1 6 6 C 1.52998 * 109.47296 * 185.00149 * 3 2 1 7 7 N 1.46501 * 109.47165 * 174.99769 * 6 3 2 8 8 C 1.46497 * 120.00413 * 270.00020 * 7 6 3 9 9 C 1.34775 * 119.99926 * 89.99926 * 7 6 3 10 10 O 1.21282 * 120.00185 * 2.73992 * 9 7 6 11 11 C 1.50698 * 120.00382 * 182.73925 * 9 7 6 12 12 H 1.08999 * 109.47188 * 315.83361 * 11 9 7 13 13 C 1.50700 * 109.47035 * 75.83048 * 11 9 7 14 14 H 1.08000 * 120.00210 * 28.37145 * 13 11 9 15 15 C 1.37880 * 120.00033 * 208.37384 * 13 11 9 16 16 N 1.31508 * 120.00295 * 1.68415 * 15 13 11 17 17 Si 1.86798 * 119.99885 * 181.68663 * 15 13 11 18 18 H 1.48503 * 109.47527 * 269.99666 * 17 15 13 19 19 H 1.48499 * 109.47388 * 29.99907 * 17 15 13 20 20 H 1.48506 * 109.47163 * 149.99728 * 17 15 13 21 21 C 1.50701 * 109.47577 * 195.83009 * 11 9 7 22 22 C 1.38232 * 120.00091 * 292.65095 * 21 11 9 23 23 C 1.38232 * 120.00193 * 179.78353 * 22 21 11 24 24 C 1.38241 * 119.99587 * 0.44670 * 23 22 21 25 25 C 1.38226 * 120.00233 * 359.80844 * 24 23 22 26 26 C 1.38239 * 120.00253 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46848 * 60.00239 * 1 2 3 28 28 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47418 * 299.99868 * 1 2 3 30 30 H 1.08999 * 109.47418 * 240.00131 * 2 1 3 31 31 H 1.08995 * 109.47291 * 119.99937 * 2 1 3 32 32 H 1.09005 * 109.47218 * 299.99850 * 5 3 2 33 33 H 1.08995 * 109.47242 * 60.00224 * 5 3 2 34 34 H 1.09002 * 109.47528 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47156 * 54.99890 * 6 3 2 36 36 H 1.09004 * 109.46864 * 294.99388 * 6 3 2 37 37 H 1.09006 * 109.46778 * 265.22845 * 8 7 6 38 38 H 1.09000 * 109.47021 * 25.22152 * 8 7 6 39 39 H 1.08992 * 109.47413 * 145.22681 * 8 7 6 40 40 H 0.97003 * 119.99536 * 354.58181 * 16 15 13 41 41 H 1.07998 * 119.99724 * 0.02562 * 22 21 11 42 42 H 1.08003 * 120.00335 * 180.26918 * 23 22 21 43 43 H 1.08001 * 119.99586 * 179.82944 * 24 23 22 44 44 H 1.08002 * 120.00406 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00566 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4444 -0.1258 7 7 4.0432 2.8239 -0.2459 8 6 4.1784 3.4398 -1.5682 9 6 4.3589 3.5263 0.8601 10 8 4.2945 3.0008 1.9513 11 6 4.7919 4.9649 0.7412 12 1 5.5009 5.0641 -0.0807 13 6 3.5882 5.8313 0.4735 14 1 2.6152 5.5296 0.8322 15 6 3.7292 7.0091 -0.2292 16 7 4.9080 7.3602 -0.6946 17 14 2.2456 8.1063 -0.5202 18 1 1.5837 7.7170 -1.7913 19 1 1.2878 7.9522 0.6041 20 1 2.6859 9.5220 -0.6049 21 6 5.4482 5.3999 2.0261 22 6 4.6993 5.5071 3.1830 23 6 5.3022 5.9019 4.3626 24 6 6.6523 6.1984 4.3832 25 6 7.4001 6.0963 3.2252 26 6 6.7981 5.6972 2.0465 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.5489 2.1253 1.3969 33 1 2.0698 1.5876 2.1491 34 1 1.9981 3.1544 1.3072 35 1 3.8570 0.8801 -1.0113 36 1 4.0029 0.9837 0.7597 37 1 5.2040 3.3252 -1.9192 38 1 3.4985 2.9526 -2.2672 39 1 3.9334 4.4998 -1.5020 40 1 5.6921 6.8321 -0.4772 41 1 3.6439 5.2787 3.1661 42 1 4.7180 5.9814 5.2675 43 1 7.1228 6.5094 5.3042 44 1 8.4548 6.3283 3.2412 45 1 7.3825 5.6170 1.1418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353546306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -47.801915 kcal Electronic energy + Delta-G solvation = -24134.793490 eV Core-core repulsion = 20922.709256 eV Total energy + Delta-G solvation = -3212.084234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23748 -39.66329 -37.71381 -36.06668 -35.41676 -32.68648 -31.64311 -30.95588 -29.19028 -27.99069 -27.10397 -25.64518 -24.20642 -23.26254 -22.28182 -20.95105 -20.20275 -18.99157 -17.81810 -17.55474 -16.82211 -16.60278 -16.03717 -15.72840 -15.67793 -15.49002 -14.95970 -14.64111 -14.42379 -14.19569 -14.07778 -13.83151 -13.68005 -13.52413 -13.23961 -13.09060 -12.90304 -12.83300 -12.64367 -12.56244 -12.15979 -12.00381 -11.91620 -11.88702 -11.75303 -11.57210 -11.42824 -10.86789 -10.61413 -10.40326 -9.65781 -9.44689 -9.34295 -8.61200 -6.34877 0.63726 0.70438 1.52806 1.59978 1.77607 1.90832 2.31540 2.54609 3.08264 3.21373 3.83072 3.90456 4.02052 4.10127 4.19480 4.21333 4.33782 4.39994 4.42039 4.44203 4.55218 4.62342 4.65724 4.68512 4.77145 4.80165 4.84009 4.87781 4.91760 5.03528 5.09584 5.14282 5.21347 5.24733 5.25991 5.32599 5.48526 5.50462 5.68119 5.72048 5.76216 5.82887 6.06716 6.16186 6.30019 6.48524 6.63528 7.38887 7.46393 8.76867 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.006399 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.311070 B = 4374.703537 C = 5504.746828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.099 4.099 4 H 0.069 0.931 5 C -0.130 4.130 6 C 0.117 3.883 7 N -0.614 5.614 8 C 0.079 3.921 9 C 0.531 3.469 10 O -0.582 6.582 11 C 0.047 3.953 12 H 0.048 0.952 13 C -0.573 4.573 14 H 0.036 0.964 15 C -0.004 4.004 16 N -0.918 5.918 17 Si 1.103 2.897 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.285 1.285 21 C -0.054 4.054 22 C -0.099 4.099 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.150 4.150 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.021 0.979 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.264 0.736 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -9.723 -0.151 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.119 4.119 4 H 0.087 0.913 5 C -0.188 4.188 6 C -0.005 4.005 7 N -0.345 5.345 8 C -0.064 4.064 9 C 0.322 3.678 10 O -0.463 6.463 11 C 0.025 3.975 12 H 0.066 0.934 13 C -0.611 4.611 14 H 0.055 0.945 15 C -0.206 4.206 16 N -0.554 5.554 17 Si 0.927 3.073 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.211 1.211 21 C -0.055 4.055 22 C -0.117 4.117 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.167 0.833 44 H 0.161 0.839 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.112 -8.635 -0.382 9.187 hybrid contribution 0.536 -1.075 0.740 1.411 sum -2.576 -9.710 0.358 10.053 Atomic orbital electron populations 1.21789 0.95137 1.02147 1.01691 1.21459 0.96557 0.94086 1.02579 1.21515 0.95102 0.97613 0.97672 0.91289 1.21712 1.00217 0.99338 0.97511 1.21640 0.94103 0.82008 1.02745 1.47773 1.65857 1.14024 1.06882 1.21888 1.01415 1.00146 0.82939 1.21032 0.74970 0.88403 0.83421 1.90536 1.55900 1.72026 1.27865 1.18070 0.97169 0.89723 0.92500 0.93409 1.21471 0.92347 1.07428 1.39853 0.94537 1.26834 1.03792 0.97374 0.92561 1.70861 0.99732 1.41970 1.42827 0.83079 0.72166 0.74813 0.77280 1.19090 1.20836 1.21103 1.20274 0.93242 0.96193 0.95805 1.20796 0.98797 0.98944 0.93191 1.21360 0.96079 1.00373 0.97602 1.21311 0.93784 1.01622 0.98974 1.21314 1.00681 1.00089 0.92435 1.21179 0.94335 1.02575 0.98756 0.92587 0.91365 0.93431 0.90179 0.92219 0.92316 0.94080 0.95960 0.88154 0.92077 0.92884 0.89044 0.91329 0.92542 0.89181 0.84714 0.83264 0.83893 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.67 71.98 0.70 -2.17 16 2 C -0.11 -2.29 5.40 30.59 0.17 -2.13 16 3 C -0.10 -2.81 2.59 -10.80 -0.03 -2.83 16 4 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 5 C -0.13 -4.53 7.74 71.98 0.56 -3.97 16 6 C 0.12 3.58 4.98 86.38 0.43 4.01 16 7 N -0.61 -23.24 2.76 -846.77 -2.34 -25.58 16 8 C 0.08 2.68 9.85 127.77 1.26 3.94 16 9 C 0.53 24.54 5.32 87.66 0.47 25.01 16 10 O -0.58 -29.14 13.27 -3.04 -0.04 -29.18 16 11 C 0.05 2.31 1.22 -13.03 -0.02 2.29 16 12 H 0.05 2.45 5.63 -2.39 -0.01 2.43 16 13 C -0.57 -30.09 6.09 25.60 0.16 -29.94 16 14 H 0.04 2.02 7.81 -2.91 -0.02 1.99 16 15 C 0.00 -0.21 5.42 84.66 0.46 0.25 16 16 N -0.92 -51.10 13.61 21.45 0.29 -50.81 16 17 Si 1.10 48.07 29.90 68.60 2.05 50.12 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 21 C -0.05 -2.63 4.46 -19.87 -0.09 -2.72 16 22 C -0.10 -4.68 8.07 22.27 0.18 -4.50 16 23 C -0.14 -5.32 10.05 22.27 0.22 -5.10 16 24 C -0.14 -4.82 10.05 22.27 0.22 -4.60 16 25 C -0.13 -4.67 10.05 22.27 0.22 -4.44 16 26 C -0.15 -6.57 9.67 22.27 0.22 -6.36 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.79 6.57 -2.38 -0.02 1.78 16 33 H 0.04 1.49 8.05 -2.39 -0.02 1.47 16 34 H 0.02 0.94 6.12 -2.39 -0.01 0.92 16 35 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 36 H 0.06 2.08 7.39 -2.38 -0.02 2.06 16 37 H 0.05 1.66 8.14 -2.38 -0.02 1.65 16 38 H 0.09 2.44 8.04 -2.39 -0.02 2.42 16 39 H 0.07 2.86 5.68 -2.39 -0.01 2.84 16 40 H 0.26 14.77 6.65 -92.71 -0.62 14.15 16 41 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16 42 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 44 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.11 4.59 7.96 -2.91 -0.02 4.57 16 Total: -1.00 -64.79 356.86 6.19 -58.60 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.10 Total: 30.11 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 5.12 Total: -33.26 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.05 Total: -76.39 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.04 Total: -29.18 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Total: -64.79 6.19 -58.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353546306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.796 kcal (2) G-P(sol) polarization free energy of solvation -64.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds