Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 H 1.08998 * 109.47189 * 304.99894 * 3 2 1 5 5 C 1.52998 * 109.46812 * 64.99904 * 3 2 1 6 6 C 1.53005 * 109.46988 * 184.99752 * 3 2 1 7 7 N 1.46498 * 109.47131 * 175.00010 * 6 3 2 8 8 C 1.46496 * 119.99984 * 270.00438 * 7 6 3 9 9 C 1.34770 * 119.99833 * 89.99843 * 7 6 3 10 10 O 1.21280 * 120.00334 * 357.25380 * 9 7 6 11 11 C 1.50700 * 120.00139 * 177.24803 * 9 7 6 12 12 H 1.08996 * 109.47419 * 38.33066 * 11 9 7 13 13 C 1.50707 * 109.47044 * 278.33570 * 11 9 7 14 14 H 1.07998 * 119.99510 * 326.68353 * 13 11 9 15 15 C 1.37875 * 120.00007 * 146.68568 * 13 11 9 16 16 N 1.31510 * 120.00187 * 8.15462 * 15 13 11 17 17 Si 1.86802 * 119.99626 * 188.15390 * 15 13 11 18 18 H 1.48495 * 109.47447 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46792 * 120.00249 * 17 15 13 20 20 H 1.48499 * 109.47184 * 239.99844 * 17 15 13 21 21 C 1.50705 * 109.47519 * 158.33558 * 11 9 7 22 22 C 1.38234 * 119.99911 * 67.53632 * 21 11 9 23 23 C 1.38236 * 119.99519 * 179.81218 * 22 21 11 24 24 C 1.38232 * 120.00349 * 0.40024 * 23 22 21 25 25 C 1.38244 * 119.99725 * 359.85242 * 24 23 22 26 26 C 1.38232 * 119.99373 * 247.81354 * 21 11 9 27 27 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47013 * 300.00128 * 1 2 3 29 29 H 1.09003 * 109.46987 * 60.00218 * 1 2 3 30 30 H 1.09004 * 109.47211 * 239.99826 * 2 1 3 31 31 H 1.09003 * 109.47008 * 120.00570 * 2 1 3 32 32 H 1.09008 * 109.46766 * 60.00218 * 5 3 2 33 33 H 1.09002 * 109.46800 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47438 * 299.99681 * 5 3 2 35 35 H 1.09000 * 109.47234 * 295.00343 * 6 3 2 36 36 H 1.08998 * 109.46916 * 55.00008 * 6 3 2 37 37 H 1.09000 * 109.47060 * 85.01124 * 8 7 6 38 38 H 1.09006 * 109.47052 * 205.01123 * 8 7 6 39 39 H 1.08994 * 109.47140 * 325.00798 * 8 7 6 40 40 H 0.96994 * 120.00243 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.00071 * 0.02562 * 22 21 11 42 42 H 1.08000 * 119.99844 * 180.23109 * 23 22 21 43 43 H 1.07999 * 120.00321 * 179.83485 * 24 23 22 44 44 H 1.08003 * 119.99780 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00666 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 7 4.0434 2.8237 -0.2457 8 6 4.1786 3.4396 -1.5680 9 6 4.3591 3.5261 0.8603 10 8 4.1999 3.0339 1.9572 11 6 4.9099 4.9231 0.7341 12 1 4.4028 5.4415 -0.0797 13 6 6.3872 4.8562 0.4436 14 1 6.9837 4.0578 0.8597 15 6 6.9772 5.8143 -0.3533 16 7 6.2907 6.8716 -0.7281 17 14 8.7515 5.6104 -0.9006 18 1 9.2976 4.3446 -0.3486 19 1 8.8103 5.5692 -2.3838 20 1 9.5571 6.7553 -0.4050 21 6 4.6848 5.6703 2.0233 22 6 5.3594 5.2912 3.1688 23 6 5.1558 5.9791 4.3504 24 6 4.2714 7.0409 4.3885 25 6 3.5929 7.4167 3.2442 26 6 3.7994 6.7312 2.0616 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0699 1.5873 2.1492 33 1 1.9990 3.1540 1.3075 34 1 0.5489 2.1252 1.3969 35 1 4.0030 0.9835 0.7597 36 1 3.8571 0.8799 -1.0112 37 1 3.2192 3.8564 -1.8745 38 1 4.9229 4.2348 -1.5241 39 1 4.4944 2.6859 -2.2893 40 1 6.7059 7.5458 -1.2883 41 1 6.0480 4.4598 3.1397 42 1 5.6856 5.6853 5.2444 43 1 4.1103 7.5766 5.3123 44 1 2.9016 8.2460 3.2740 45 1 3.2693 7.0248 1.1676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353546308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -30.963704 kcal Electronic energy + Delta-G solvation = -23989.962305 eV Core-core repulsion = 20778.608231 eV Total energy + Delta-G solvation = -3211.354075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47905 -37.97344 -36.31595 -34.24125 -33.53517 -31.09286 -29.88628 -29.80389 -27.57722 -26.62407 -25.65798 -24.02472 -22.85972 -21.53488 -20.61096 -19.69971 -18.26272 -16.69367 -16.18180 -15.84513 -15.38028 -15.03825 -14.80791 -14.41163 -14.03837 -13.81179 -13.43077 -13.16318 -12.90145 -12.52778 -12.32661 -12.24865 -12.17336 -11.87358 -11.76350 -11.66006 -11.52562 -11.25465 -11.04132 -11.03310 -10.93208 -10.66643 -10.39825 -10.36153 -10.31145 -10.20039 -9.92798 -9.38831 -8.74535 -8.50864 -7.89171 -7.87898 -7.55205 -6.26853 -4.31205 2.41632 2.45421 3.17925 3.27764 3.31934 3.74231 3.85255 4.30085 4.86223 5.00179 5.03541 5.10320 5.12829 5.37213 5.66000 5.70836 5.75553 5.78387 5.83053 5.85317 5.85947 5.93884 5.99125 6.08062 6.14527 6.18251 6.24070 6.28282 6.34073 6.37517 6.53648 6.57363 6.62113 6.66960 6.82448 6.87840 7.01034 7.18532 7.33246 7.41550 7.51350 7.65757 7.80157 8.00973 8.07513 8.30075 8.72271 9.24790 9.33262 10.81098 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.006310 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.604851 B = 4436.523304 C = 5968.391074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.106 4.106 4 H 0.065 0.935 5 C -0.135 4.135 6 C 0.121 3.879 7 N -0.618 5.618 8 C 0.078 3.922 9 C 0.530 3.470 10 O -0.557 6.557 11 C 0.053 3.947 12 H 0.081 0.919 13 C -0.507 4.507 14 H 0.062 0.938 15 C 0.073 3.927 16 N -0.876 5.876 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.015 4.015 22 C -0.077 4.077 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.119 4.119 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.266 0.734 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -6.694 -0.719 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.126 4.126 4 H 0.084 0.916 5 C -0.193 4.193 6 C -0.003 4.003 7 N -0.351 5.351 8 C -0.065 4.065 9 C 0.321 3.679 10 O -0.436 6.436 11 C 0.032 3.968 12 H 0.099 0.901 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.208 1.208 21 C -0.016 4.016 22 C -0.095 4.095 23 C -0.156 4.156 24 C -0.166 4.166 25 C -0.153 4.153 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.523 -6.772 -0.261 10.125 hybrid contribution 1.011 0.120 -0.497 1.133 sum -6.512 -6.652 -0.758 9.339 Atomic orbital electron populations 1.21795 0.96102 1.01032 1.01908 1.21508 0.95751 0.96522 1.01680 1.21564 0.96247 0.95702 0.99050 0.91609 1.21804 0.99228 1.01613 0.96611 1.21397 0.93054 0.83921 1.01882 1.47756 1.66821 1.13229 1.07282 1.21857 1.01894 0.99520 0.83221 1.21580 0.74270 0.89220 0.82784 1.90560 1.54386 1.72147 1.26460 1.18129 0.98129 0.87259 0.93258 0.90131 1.20650 0.90770 1.11829 1.31224 0.91975 1.24943 0.98271 0.94524 0.95394 1.69960 1.37213 1.08855 1.35106 0.86480 0.84400 0.78493 0.78470 1.19511 1.20635 1.20808 1.20083 0.91842 0.94440 0.95192 1.20873 0.98351 0.98393 0.91873 1.20973 0.99665 0.97119 0.97798 1.20791 0.99428 0.98846 0.97577 1.20879 1.00795 1.00077 0.93509 1.20971 0.98931 0.96830 0.96944 0.93207 0.92448 0.92995 0.92326 0.91991 0.92450 0.92263 0.93991 0.90561 0.91738 0.94174 0.87761 0.92852 0.92446 0.86797 0.87684 0.87831 0.87689 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.12 -1.32 5.40 -26.73 -0.14 -1.47 16 3 C -0.11 -1.48 2.59 -90.62 -0.24 -1.71 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 5 C -0.14 -2.17 7.66 37.16 0.28 -1.88 16 6 C 0.12 1.90 5.04 -4.04 -0.02 1.88 16 7 N -0.62 -11.50 2.76 -181.58 -0.50 -12.00 16 8 C 0.08 1.32 10.11 59.84 0.60 1.93 16 9 C 0.53 11.69 5.45 -10.99 -0.06 11.63 16 10 O -0.56 -13.18 12.80 5.56 0.07 -13.11 16 11 C 0.05 1.26 1.48 -94.07 -0.14 1.12 16 12 H 0.08 1.97 6.00 -51.93 -0.31 1.66 16 13 C -0.51 -12.80 6.68 -34.44 -0.23 -13.03 16 14 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 15 C 0.07 1.85 5.37 -17.82 -0.10 1.75 16 16 N -0.88 -22.79 12.91 55.43 0.72 -22.08 16 17 Si 0.89 19.92 29.55 -169.99 -5.02 14.90 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.01 -0.34 4.52 -104.62 -0.47 -0.82 16 22 C -0.08 -1.76 8.05 -39.58 -0.32 -2.08 16 23 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 24 C -0.15 -2.81 10.05 -39.58 -0.40 -3.20 16 25 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 26 C -0.12 -2.60 9.67 -39.58 -0.38 -2.98 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.98 7.96 -51.92 -0.41 0.57 16 33 H 0.06 1.13 6.00 -51.93 -0.31 0.82 16 34 H 0.04 0.59 6.56 -51.93 -0.34 0.25 16 35 H 0.08 1.31 7.46 -51.93 -0.39 0.93 16 36 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 2.08 5.49 -51.93 -0.29 1.79 16 39 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 40 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 41 H 0.11 2.70 7.74 -52.49 -0.41 2.29 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 45 H 0.11 2.31 7.96 -52.49 -0.42 1.89 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -27.75 357.96 -8.78 -36.53 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.39 Total: 6.61 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.04 Total: -16.24 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.21 Total: -34.08 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.11 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.75 -8.78 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353546308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.567 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds