Wall clock time and date at job start Tue Mar 31 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 H 1.08998 * 109.47189 * 304.99894 * 3 2 1 5 5 C 1.52998 * 109.46812 * 64.99904 * 3 2 1 6 6 C 1.53005 * 109.46988 * 184.99752 * 3 2 1 7 7 N 1.46498 * 109.47131 * 175.00010 * 6 3 2 8 8 C 1.46496 * 119.99984 * 270.00438 * 7 6 3 9 9 C 1.34770 * 119.99833 * 89.99843 * 7 6 3 10 10 O 1.21280 * 120.00334 * 357.25380 * 9 7 6 11 11 C 1.50700 * 120.00139 * 177.24803 * 9 7 6 12 12 H 1.08996 * 109.47419 * 38.33066 * 11 9 7 13 13 C 1.50707 * 109.47044 * 278.33570 * 11 9 7 14 14 H 1.07998 * 119.99510 * 326.68353 * 13 11 9 15 15 C 1.37875 * 120.00007 * 146.68568 * 13 11 9 16 16 N 1.31510 * 120.00187 * 8.15462 * 15 13 11 17 17 Si 1.86802 * 119.99626 * 188.15390 * 15 13 11 18 18 H 1.48495 * 109.47447 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46792 * 120.00249 * 17 15 13 20 20 H 1.48499 * 109.47184 * 239.99844 * 17 15 13 21 21 C 1.50705 * 109.47519 * 158.33558 * 11 9 7 22 22 C 1.38234 * 119.99911 * 67.53632 * 21 11 9 23 23 C 1.38236 * 119.99519 * 179.81218 * 22 21 11 24 24 C 1.38232 * 120.00349 * 0.40024 * 23 22 21 25 25 C 1.38244 * 119.99725 * 359.85242 * 24 23 22 26 26 C 1.38232 * 119.99373 * 247.81354 * 21 11 9 27 27 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47013 * 300.00128 * 1 2 3 29 29 H 1.09003 * 109.46987 * 60.00218 * 1 2 3 30 30 H 1.09004 * 109.47211 * 239.99826 * 2 1 3 31 31 H 1.09003 * 109.47008 * 120.00570 * 2 1 3 32 32 H 1.09008 * 109.46766 * 60.00218 * 5 3 2 33 33 H 1.09002 * 109.46800 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47438 * 299.99681 * 5 3 2 35 35 H 1.09000 * 109.47234 * 295.00343 * 6 3 2 36 36 H 1.08998 * 109.46916 * 55.00008 * 6 3 2 37 37 H 1.09000 * 109.47060 * 85.01124 * 8 7 6 38 38 H 1.09006 * 109.47052 * 205.01123 * 8 7 6 39 39 H 1.08994 * 109.47140 * 325.00798 * 8 7 6 40 40 H 0.96994 * 120.00243 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.00071 * 0.02562 * 22 21 11 42 42 H 1.08000 * 119.99844 * 180.23109 * 23 22 21 43 43 H 1.07999 * 120.00321 * 179.83485 * 24 23 22 44 44 H 1.08003 * 119.99780 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00666 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 7 4.0434 2.8237 -0.2457 8 6 4.1786 3.4396 -1.5680 9 6 4.3591 3.5261 0.8603 10 8 4.1999 3.0339 1.9572 11 6 4.9099 4.9231 0.7341 12 1 4.4028 5.4415 -0.0797 13 6 6.3872 4.8562 0.4436 14 1 6.9837 4.0578 0.8597 15 6 6.9772 5.8143 -0.3533 16 7 6.2907 6.8716 -0.7281 17 14 8.7515 5.6104 -0.9006 18 1 9.2976 4.3446 -0.3486 19 1 8.8103 5.5692 -2.3838 20 1 9.5571 6.7553 -0.4050 21 6 4.6848 5.6703 2.0233 22 6 5.3594 5.2912 3.1688 23 6 5.1558 5.9791 4.3504 24 6 4.2714 7.0409 4.3885 25 6 3.5929 7.4167 3.2442 26 6 3.7994 6.7312 2.0616 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0699 1.5873 2.1492 33 1 1.9990 3.1540 1.3075 34 1 0.5489 2.1252 1.3969 35 1 4.0030 0.9835 0.7597 36 1 3.8571 0.8799 -1.0112 37 1 3.2192 3.8564 -1.8745 38 1 4.9229 4.2348 -1.5241 39 1 4.4944 2.6859 -2.2893 40 1 6.7059 7.5458 -1.2883 41 1 6.0480 4.4598 3.1397 42 1 5.6856 5.6853 5.2444 43 1 4.1103 7.5766 5.3123 44 1 2.9016 8.2460 3.2740 45 1 3.2693 7.0248 1.1676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353546308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:42 Heat of formation + Delta-G solvation = -43.565428 kcal Electronic energy + Delta-G solvation = -23990.508757 eV Core-core repulsion = 20778.608231 eV Total energy + Delta-G solvation = -3211.900526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10267 -39.54234 -37.63741 -35.82907 -35.22930 -32.86958 -31.52124 -30.91211 -29.21621 -28.04835 -27.14380 -25.69280 -24.12036 -23.18277 -22.15293 -20.88340 -19.87891 -18.58228 -17.85898 -17.42263 -16.91221 -16.52908 -16.16523 -15.87878 -15.60308 -15.43052 -14.72984 -14.52857 -14.24716 -14.11660 -13.86542 -13.82187 -13.52751 -13.50729 -13.26915 -12.94995 -12.85684 -12.78591 -12.74715 -12.62142 -12.18461 -12.10237 -11.89185 -11.85289 -11.61197 -11.52914 -11.38347 -11.24636 -10.65608 -10.27863 -9.54048 -9.37361 -9.23078 -8.20901 -6.30608 0.76415 0.81804 1.38881 1.43234 1.53138 2.01570 2.37583 2.45267 3.08833 3.26069 3.87963 3.96664 4.05594 4.21898 4.29200 4.30531 4.43097 4.48882 4.51429 4.57018 4.60387 4.68446 4.75265 4.80711 4.85388 4.88101 4.94142 4.99756 5.07015 5.09140 5.15339 5.19171 5.24297 5.28368 5.38110 5.46872 5.53009 5.54245 5.65329 5.79098 5.83925 5.91501 5.97705 6.27078 6.40975 6.65889 6.73701 7.34856 7.57535 8.86862 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.006310 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.604851 B = 4436.523304 C = 5968.391074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.098 4.098 4 H 0.072 0.928 5 C -0.128 4.128 6 C 0.117 3.883 7 N -0.616 5.616 8 C 0.079 3.921 9 C 0.526 3.474 10 O -0.582 6.582 11 C 0.058 3.942 12 H 0.064 0.936 13 C -0.512 4.512 14 H 0.041 0.959 15 C 0.040 3.960 16 N -0.898 5.898 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.268 1.268 20 H -0.285 1.285 21 C -0.042 4.042 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.140 4.140 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.268 0.732 41 H 0.091 0.909 42 H 0.132 0.868 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -7.044 -0.999 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.118 4.118 4 H 0.091 0.909 5 C -0.185 4.185 6 C -0.005 4.005 7 N -0.348 5.348 8 C -0.063 4.063 9 C 0.317 3.683 10 O -0.462 6.462 11 C 0.037 3.963 12 H 0.082 0.918 13 C -0.550 4.550 14 H 0.059 0.941 15 C -0.163 4.163 16 N -0.535 5.535 17 Si 0.774 3.226 18 H -0.199 1.199 19 H -0.192 1.192 20 H -0.211 1.211 21 C -0.043 4.043 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.161 4.161 25 C -0.149 4.149 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.405 -7.140 -0.573 11.044 hybrid contribution 1.233 0.231 -0.359 1.305 sum -7.172 -6.909 -0.932 10.002 Atomic orbital electron populations 1.21781 0.94983 1.02113 1.01792 1.21469 0.96653 0.94327 1.02434 1.21508 0.94840 0.97576 0.97843 0.90933 1.21708 1.00121 0.99312 0.97358 1.21626 0.94240 0.82191 1.02444 1.47801 1.65788 1.14193 1.06977 1.21889 1.01901 0.99617 0.82934 1.21338 0.74556 0.89017 0.83398 1.90528 1.55664 1.72506 1.27537 1.17979 0.97069 0.88247 0.92983 0.91809 1.20624 0.91684 1.11310 1.31395 0.94060 1.25484 1.01301 0.94151 0.95336 1.70036 1.38462 1.09343 1.35661 0.85657 0.80462 0.77858 0.78648 1.19928 1.19248 1.21061 1.20210 0.93215 0.95450 0.95422 1.20843 0.99125 0.98959 0.93287 1.21320 0.99800 0.96974 0.97586 1.21255 0.97829 0.98013 0.98958 1.21293 1.00738 1.00216 0.92628 1.21121 0.99320 0.97162 0.98234 0.91575 0.93251 0.92425 0.90415 0.92420 0.94247 0.95856 0.92155 0.92556 0.88563 0.92577 0.91034 0.89596 0.92304 0.89042 0.84977 0.83624 0.84240 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.67 71.98 0.70 -1.97 16 2 C -0.11 -2.27 5.40 30.59 0.17 -2.10 16 3 C -0.10 -2.63 2.59 -10.79 -0.03 -2.66 16 4 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 5 C -0.13 -4.15 7.66 71.98 0.55 -3.59 16 6 C 0.12 3.61 5.04 86.38 0.44 4.04 16 7 N -0.62 -23.26 2.76 -846.77 -2.34 -25.59 16 8 C 0.08 2.65 10.11 127.77 1.29 3.95 16 9 C 0.53 24.32 5.45 87.66 0.48 24.79 16 10 O -0.58 -29.05 12.80 -3.03 -0.04 -29.09 16 11 C 0.06 2.90 1.48 -13.03 -0.02 2.88 16 12 H 0.06 3.31 6.00 -2.39 -0.01 3.29 16 13 C -0.51 -27.03 6.68 25.60 0.17 -26.86 16 14 H 0.04 2.29 7.83 -2.91 -0.02 2.27 16 15 C 0.04 2.05 5.37 84.65 0.45 2.50 16 16 N -0.90 -47.87 12.91 21.45 0.28 -47.59 16 17 Si 0.95 41.49 29.55 68.60 2.03 43.52 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 C -0.04 -2.06 4.52 -19.87 -0.09 -2.15 16 22 C -0.10 -4.94 8.05 22.27 0.18 -4.76 16 23 C -0.14 -5.50 10.05 22.27 0.22 -5.28 16 24 C -0.14 -5.06 10.05 22.27 0.22 -4.83 16 25 C -0.13 -4.91 10.05 22.27 0.22 -4.69 16 26 C -0.14 -6.26 9.67 22.27 0.22 -6.05 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.95 6.56 -2.39 -0.02 0.94 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.38 7.96 -2.38 -0.02 1.37 16 33 H 0.02 0.90 6.00 -2.39 -0.01 0.89 16 34 H 0.06 1.68 6.56 -2.39 -0.02 1.66 16 35 H 0.06 1.97 7.46 -2.39 -0.02 1.95 16 36 H 0.10 2.34 7.94 -2.39 -0.02 2.33 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.92 5.49 -2.38 -0.01 2.91 16 39 H 0.09 2.29 7.96 -2.39 -0.02 2.27 16 40 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 41 H 0.09 4.63 7.74 -2.91 -0.02 4.61 16 42 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 45 H 0.11 4.68 7.96 -2.91 -0.02 4.65 16 Total: -1.00 -62.82 357.96 6.04 -56.77 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.95 Total: 28.76 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 5.17 Total: -26.78 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -2.06 Total: -73.19 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.04 Total: -29.09 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -62.82 6.04 -56.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353546308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.206 kcal (2) G-P(sol) polarization free energy of solvation -62.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds