Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.09003 * 109.47331 * 54.99735 * 3 2 1 5 5 C 1.52999 * 109.47302 * 294.99869 * 3 2 1 6 6 C 1.53005 * 109.47281 * 174.99508 * 3 2 1 7 7 N 1.46498 * 109.47320 * 184.99720 * 6 3 2 8 8 C 1.46502 * 120.00209 * 270.00436 * 7 6 3 9 9 C 1.34777 * 119.99556 * 90.00211 * 7 6 3 10 10 O 1.21278 * 120.00440 * 0.02562 * 9 7 6 11 11 C 1.50706 * 120.00002 * 180.02562 * 9 7 6 12 12 H 1.09003 * 109.46669 * 323.91515 * 11 9 7 13 13 C 1.50699 * 109.46993 * 83.91117 * 11 9 7 14 14 H 1.07993 * 119.99984 * 34.32106 * 13 11 9 15 15 C 1.37881 * 119.99888 * 214.31284 * 13 11 9 16 16 N 1.31507 * 119.99950 * 178.59317 * 15 13 11 17 17 Si 1.86804 * 120.00010 * 358.58935 * 15 13 11 18 18 H 1.48501 * 109.46821 * 84.71843 * 17 15 13 19 19 H 1.48494 * 109.47309 * 204.71880 * 17 15 13 20 20 H 1.48495 * 109.47218 * 324.72114 * 17 15 13 21 21 C 1.50694 * 109.47023 * 203.91451 * 11 9 7 22 22 C 1.38237 * 120.00409 * 296.14265 * 21 11 9 23 23 C 1.38231 * 120.00150 * 179.79052 * 22 21 11 24 24 C 1.38235 * 120.00298 * 0.44187 * 23 22 21 25 25 C 1.38240 * 119.99431 * 359.81234 * 24 23 22 26 26 C 1.38227 * 120.00202 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47556 * 300.00063 * 1 2 3 28 28 H 1.09006 * 109.46805 * 60.00201 * 1 2 3 29 29 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47556 * 239.99937 * 2 1 3 31 31 H 1.08999 * 109.47145 * 119.99631 * 2 1 3 32 32 H 1.09003 * 109.46819 * 300.00181 * 5 3 2 33 33 H 1.09004 * 109.47147 * 180.02562 * 5 3 2 34 34 H 1.08994 * 109.47142 * 59.99630 * 5 3 2 35 35 H 1.09001 * 109.47229 * 305.00546 * 6 3 2 36 36 H 1.09008 * 109.46804 * 64.99938 * 6 3 2 37 37 H 1.09000 * 109.47027 * 90.00145 * 8 7 6 38 38 H 1.09002 * 109.47030 * 209.99749 * 8 7 6 39 39 H 1.08991 * 109.47200 * 329.99705 * 8 7 6 40 40 H 0.96998 * 120.00002 * 179.97438 * 16 15 13 41 41 H 1.08006 * 119.99561 * 359.97438 * 22 21 11 42 42 H 1.07997 * 119.99760 * 180.27364 * 23 22 21 43 43 H 1.07991 * 120.00284 * 179.83278 * 24 23 22 44 44 H 1.08008 * 119.99348 * 179.97438 * 25 24 23 45 45 H 1.08012 * 119.99696 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 7 4.0433 2.8238 0.2459 8 6 4.3865 3.5873 -0.9564 9 6 4.1676 3.3904 1.4624 10 8 3.8839 2.7583 2.4577 11 6 4.6592 4.8097 1.5859 12 1 5.4157 4.9996 0.8245 13 6 3.5049 5.7595 1.3951 14 1 2.5193 5.4884 1.7435 15 6 3.7072 6.9748 0.7760 16 7 2.6947 7.7918 0.5846 17 14 5.4195 7.4606 0.2089 18 1 5.6769 6.8865 -1.1362 19 1 5.5176 8.9408 0.1425 20 1 6.4252 6.9405 1.1697 21 6 5.2592 5.0162 2.9528 22 6 4.4653 4.9098 4.0794 23 6 5.0166 5.0950 5.3334 24 6 6.3599 5.3957 5.4604 25 6 7.1526 5.5074 4.3334 26 6 6.6023 5.3178 3.0797 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5875 -2.1491 33 1 1.9990 3.1541 -1.3075 34 1 0.5490 2.1252 -1.3970 35 1 3.8570 0.8800 1.0114 36 1 4.0030 0.9835 -0.7595 37 1 3.5040 4.1175 -1.3144 38 1 5.1707 4.3062 -0.7188 39 1 4.7402 2.9065 -1.7305 40 1 2.8370 8.6469 0.1494 41 1 3.4149 4.6789 3.9800 42 1 4.3973 5.0074 6.2139 43 1 6.7900 5.5431 6.4400 44 1 8.2021 5.7428 4.4326 45 1 7.2218 5.4047 2.1992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353546310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -25.031886 kcal Electronic energy + Delta-G solvation = -23986.500125 eV Core-core repulsion = 20775.403274 eV Total energy + Delta-G solvation = -3211.096852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61040 -38.16226 -36.52539 -34.27426 -33.52563 -31.50819 -30.09034 -29.75850 -27.95735 -27.26484 -25.34187 -23.87269 -22.84833 -21.82463 -20.74067 -19.78743 -18.25952 -17.15464 -16.26195 -16.11317 -15.52799 -15.17718 -14.80069 -14.54499 -14.17840 -13.77346 -13.55897 -13.16604 -12.82202 -12.75513 -12.64656 -12.48825 -12.42175 -12.21238 -11.88769 -11.74654 -11.52807 -11.46772 -11.16963 -10.99437 -10.93203 -10.69675 -10.49283 -10.39503 -10.32275 -10.17313 -9.92768 -9.54285 -8.82760 -8.68618 -8.06747 -8.00362 -7.76487 -6.27127 -4.30059 2.18331 2.25719 3.11929 3.25909 3.28645 3.56692 3.74687 4.24202 4.65273 5.01212 5.04976 5.06711 5.16380 5.34476 5.55901 5.57249 5.62412 5.67997 5.69317 5.71723 5.77312 5.85601 5.89268 5.91986 6.05330 6.08290 6.11379 6.15856 6.21246 6.29241 6.33089 6.35564 6.41858 6.49001 6.62437 6.70030 6.78033 6.90755 7.17308 7.21167 7.31621 7.32674 7.64578 7.83792 8.05638 8.29908 8.74911 9.08430 9.30375 10.84164 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.006145 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.954998 B = 4555.650497 C = 5612.421104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.108 4.108 4 H 0.077 0.923 5 C -0.150 4.150 6 C 0.123 3.877 7 N -0.617 5.617 8 C 0.086 3.914 9 C 0.537 3.463 10 O -0.555 6.555 11 C 0.034 3.966 12 H 0.058 0.942 13 C -0.501 4.501 14 H 0.080 0.920 15 C 0.085 3.915 16 N -0.884 5.884 17 Si 0.854 3.146 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.247 1.247 21 C -0.038 4.038 22 C -0.065 4.065 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.132 4.132 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.268 0.732 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -9.971 -2.636 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.128 4.128 4 H 0.095 0.905 5 C -0.207 4.207 6 C 0.000 4.000 7 N -0.350 5.350 8 C -0.057 4.057 9 C 0.328 3.672 10 O -0.433 6.433 11 C 0.012 3.988 12 H 0.076 0.924 13 C -0.539 4.539 14 H 0.098 0.902 15 C -0.119 4.119 16 N -0.520 5.520 17 Si 0.680 3.320 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.171 1.171 21 C -0.039 4.039 22 C -0.083 4.083 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.129 -10.105 -2.198 10.804 hybrid contribution 0.757 0.637 -0.488 1.103 sum 3.886 -9.469 -2.686 10.582 Atomic orbital electron populations 1.21796 0.96024 1.00986 1.02090 1.21489 0.95902 0.96427 1.01500 1.21558 0.96083 0.95850 0.99294 0.90496 1.21969 1.00928 1.01559 0.96225 1.21404 0.93367 0.83494 1.01713 1.47727 1.67013 1.13384 1.06862 1.21824 1.01423 0.95844 0.86643 1.21148 0.75827 0.88563 0.81661 1.90567 1.51495 1.64634 1.36607 1.18396 0.97864 0.90828 0.91714 0.92419 1.20425 0.93851 1.00036 1.39546 0.90152 1.24945 0.96541 0.95811 0.94606 1.69850 1.30657 1.09889 1.41576 0.87212 0.86216 0.78562 0.79964 1.19733 1.21128 1.17138 1.20158 0.92096 0.95374 0.96294 1.20925 1.00085 0.96063 0.91235 1.21052 0.95085 1.01710 0.97346 1.20865 0.94396 1.03143 0.97618 1.20868 0.98876 1.02614 0.92877 1.21046 0.95013 1.02118 0.96833 0.92700 0.92558 0.93247 0.92360 0.92109 0.93444 0.91403 0.92975 0.90496 0.91572 0.91760 0.91252 0.92500 0.92182 0.86092 0.87179 0.87424 0.87388 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.12 -1.37 5.40 -26.73 -0.14 -1.52 16 3 C -0.11 -1.58 2.59 -90.62 -0.24 -1.82 16 4 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 5 C -0.15 -2.06 8.52 37.16 0.32 -1.74 16 6 C 0.12 1.88 4.92 -4.04 -0.02 1.86 16 7 N -0.62 -11.18 2.70 -181.57 -0.49 -11.67 16 8 C 0.09 1.39 9.23 59.85 0.55 1.94 16 9 C 0.54 11.74 6.76 -10.98 -0.07 11.67 16 10 O -0.56 -13.26 14.47 5.56 0.08 -13.18 16 11 C 0.03 0.76 1.20 -94.08 -0.11 0.65 16 12 H 0.06 1.25 3.34 -51.93 -0.17 1.08 16 13 C -0.50 -13.07 8.21 -34.44 -0.28 -13.35 16 14 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 15 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 16 N -0.88 -25.20 13.96 55.43 0.77 -24.43 16 17 Si 0.85 19.36 26.73 -169.99 -4.54 14.82 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.25 -5.33 4.75 56.52 0.27 -5.07 16 21 C -0.04 -0.86 4.43 -104.63 -0.46 -1.32 16 22 C -0.06 -1.45 7.99 -39.58 -0.32 -1.77 16 23 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 24 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 25 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.13 -2.69 8.52 -39.59 -0.34 -3.03 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.07 5.43 -51.93 -0.28 0.79 16 34 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 35 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.07 0.83 7.89 -51.92 -0.41 0.42 16 37 H 0.06 1.09 6.38 -51.93 -0.33 0.76 16 38 H 0.07 1.18 5.86 -51.93 -0.30 0.87 16 39 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 2.86 7.58 -52.48 -0.40 2.46 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.11 2.08 7.01 -52.48 -0.37 1.72 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -29.69 351.20 -8.17 -37.86 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.24 Total: 7.64 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.05 Total: -16.33 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.28 Total: -36.10 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.54 Total: 14.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.69 -8.17 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353546310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.832 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds