Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.09003 * 109.47331 * 54.99735 * 3 2 1 5 5 C 1.52999 * 109.47302 * 294.99869 * 3 2 1 6 6 C 1.53005 * 109.47281 * 174.99508 * 3 2 1 7 7 N 1.46498 * 109.47320 * 184.99720 * 6 3 2 8 8 C 1.46502 * 120.00209 * 270.00436 * 7 6 3 9 9 C 1.34777 * 119.99556 * 90.00211 * 7 6 3 10 10 O 1.21278 * 120.00440 * 0.02562 * 9 7 6 11 11 C 1.50706 * 120.00002 * 180.02562 * 9 7 6 12 12 H 1.09003 * 109.46669 * 323.91515 * 11 9 7 13 13 C 1.50699 * 109.46993 * 83.91117 * 11 9 7 14 14 H 1.07993 * 119.99984 * 34.32106 * 13 11 9 15 15 C 1.37881 * 119.99888 * 214.31284 * 13 11 9 16 16 N 1.31507 * 119.99950 * 178.59317 * 15 13 11 17 17 Si 1.86804 * 120.00010 * 358.58935 * 15 13 11 18 18 H 1.48501 * 109.46821 * 84.71843 * 17 15 13 19 19 H 1.48494 * 109.47309 * 204.71880 * 17 15 13 20 20 H 1.48495 * 109.47218 * 324.72114 * 17 15 13 21 21 C 1.50694 * 109.47023 * 203.91451 * 11 9 7 22 22 C 1.38237 * 120.00409 * 296.14265 * 21 11 9 23 23 C 1.38231 * 120.00150 * 179.79052 * 22 21 11 24 24 C 1.38235 * 120.00298 * 0.44187 * 23 22 21 25 25 C 1.38240 * 119.99431 * 359.81234 * 24 23 22 26 26 C 1.38227 * 120.00202 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47556 * 300.00063 * 1 2 3 28 28 H 1.09006 * 109.46805 * 60.00201 * 1 2 3 29 29 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47556 * 239.99937 * 2 1 3 31 31 H 1.08999 * 109.47145 * 119.99631 * 2 1 3 32 32 H 1.09003 * 109.46819 * 300.00181 * 5 3 2 33 33 H 1.09004 * 109.47147 * 180.02562 * 5 3 2 34 34 H 1.08994 * 109.47142 * 59.99630 * 5 3 2 35 35 H 1.09001 * 109.47229 * 305.00546 * 6 3 2 36 36 H 1.09008 * 109.46804 * 64.99938 * 6 3 2 37 37 H 1.09000 * 109.47027 * 90.00145 * 8 7 6 38 38 H 1.09002 * 109.47030 * 209.99749 * 8 7 6 39 39 H 1.08991 * 109.47200 * 329.99705 * 8 7 6 40 40 H 0.96998 * 120.00002 * 179.97438 * 16 15 13 41 41 H 1.08006 * 119.99561 * 359.97438 * 22 21 11 42 42 H 1.07997 * 119.99760 * 180.27364 * 23 22 21 43 43 H 1.07991 * 120.00284 * 179.83278 * 24 23 22 44 44 H 1.08008 * 119.99348 * 179.97438 * 25 24 23 45 45 H 1.08012 * 119.99696 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 7 4.0433 2.8238 0.2459 8 6 4.3865 3.5873 -0.9564 9 6 4.1676 3.3904 1.4624 10 8 3.8839 2.7583 2.4577 11 6 4.6592 4.8097 1.5859 12 1 5.4157 4.9996 0.8245 13 6 3.5049 5.7595 1.3951 14 1 2.5193 5.4884 1.7435 15 6 3.7072 6.9748 0.7760 16 7 2.6947 7.7918 0.5846 17 14 5.4195 7.4606 0.2089 18 1 5.6769 6.8865 -1.1362 19 1 5.5176 8.9408 0.1425 20 1 6.4252 6.9405 1.1697 21 6 5.2592 5.0162 2.9528 22 6 4.4653 4.9098 4.0794 23 6 5.0166 5.0950 5.3334 24 6 6.3599 5.3957 5.4604 25 6 7.1526 5.5074 4.3334 26 6 6.6023 5.3178 3.0797 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5875 -2.1491 33 1 1.9990 3.1541 -1.3075 34 1 0.5490 2.1252 -1.3970 35 1 3.8570 0.8800 1.0114 36 1 4.0030 0.9835 -0.7595 37 1 3.5040 4.1175 -1.3144 38 1 5.1707 4.3062 -0.7188 39 1 4.7402 2.9065 -1.7305 40 1 2.8370 8.6469 0.1494 41 1 3.4149 4.6789 3.9800 42 1 4.3973 5.0074 6.2139 43 1 6.7900 5.5431 6.4400 44 1 8.2021 5.7428 4.4326 45 1 7.2218 5.4047 2.1992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353546310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -41.192643 kcal Electronic energy + Delta-G solvation = -23987.200908 eV Core-core repulsion = 20775.403274 eV Total energy + Delta-G solvation = -3211.797635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21970 -39.65253 -37.87829 -35.82437 -35.26212 -33.35051 -31.62484 -30.89810 -29.50704 -28.64947 -26.81383 -25.45383 -24.23591 -23.37487 -22.22663 -20.98180 -19.87636 -19.10242 -17.94556 -17.60333 -17.00405 -16.59824 -16.31622 -15.91861 -15.74862 -15.25367 -14.93361 -14.75638 -14.42667 -14.19105 -14.05244 -13.95890 -13.73903 -13.68582 -13.35554 -13.03293 -12.88962 -12.74840 -12.64878 -12.63443 -12.20957 -12.11145 -11.91829 -11.83126 -11.65321 -11.56243 -11.45892 -11.41298 -10.76968 -10.47078 -9.61641 -9.48351 -9.34912 -8.33680 -6.42369 0.63823 0.71028 1.32686 1.41080 1.49983 1.86273 2.29440 2.32867 2.98320 3.16043 3.82602 3.93544 4.04963 4.07751 4.12269 4.23018 4.33747 4.34643 4.41409 4.43651 4.49309 4.55695 4.64936 4.66440 4.77003 4.83153 4.87157 4.89520 4.91212 5.00314 5.10169 5.12567 5.20736 5.22374 5.24349 5.33465 5.40902 5.47303 5.55516 5.69871 5.74679 5.81450 5.96669 6.19317 6.30046 6.51606 6.61513 7.21864 7.41355 8.81708 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.006145 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.954998 B = 4555.650497 C = 5612.421104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.105 4.105 4 H 0.026 0.974 5 C -0.144 4.144 6 C 0.120 3.880 7 N -0.612 5.612 8 C 0.080 3.920 9 C 0.527 3.473 10 O -0.587 6.587 11 C 0.038 3.962 12 H 0.074 0.926 13 C -0.495 4.495 14 H 0.020 0.980 15 C 0.034 3.966 16 N -0.937 5.937 17 Si 0.915 3.085 18 H -0.243 1.243 19 H -0.293 1.293 20 H -0.226 1.226 21 C -0.067 4.067 22 C -0.098 4.098 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.144 4.144 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -11.152 -3.657 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.045 0.955 5 C -0.201 4.201 6 C -0.002 4.002 7 N -0.344 5.344 8 C -0.062 4.062 9 C 0.318 3.682 10 O -0.468 6.468 11 C 0.017 3.983 12 H 0.091 0.909 13 C -0.532 4.532 14 H 0.039 0.961 15 C -0.166 4.166 16 N -0.575 5.575 17 Si 0.737 3.263 18 H -0.166 1.166 19 H -0.219 1.219 20 H -0.149 1.149 21 C -0.068 4.068 22 C -0.116 4.116 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.145 4.145 26 C -0.162 4.162 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.638 -11.325 -3.247 13.522 hybrid contribution -0.430 0.946 -0.075 1.042 sum 6.208 -10.379 -3.322 12.541 Atomic orbital electron populations 1.21798 0.95618 1.02102 1.01361 1.21453 0.96239 0.94271 1.02666 1.21492 0.95648 0.97438 0.97930 0.95543 1.21915 1.01284 1.00246 0.96667 1.21646 0.93782 0.81808 1.02947 1.47803 1.65733 1.14547 1.06297 1.22000 1.00684 0.96778 0.86722 1.21107 0.76011 0.88490 0.82634 1.90534 1.52937 1.65259 1.38025 1.18278 0.96704 0.90464 0.92867 0.90870 1.20294 0.92759 1.01203 1.38991 0.96117 1.25783 1.00967 0.95326 0.94512 1.70013 1.33451 1.10598 1.43401 0.86248 0.81054 0.77737 0.81283 1.16648 1.21906 1.14911 1.20201 0.93640 0.97295 0.95700 1.20830 0.98705 0.98781 0.93312 1.21339 0.96653 1.01048 0.96623 1.21345 0.93249 1.00879 0.99690 1.21369 1.00886 1.00443 0.91799 1.21306 0.93979 1.02111 0.98828 0.94679 0.92123 0.91151 0.89511 0.92484 0.90224 0.94050 0.92750 0.91942 0.87274 0.93195 0.91906 0.87708 0.92145 0.89872 0.85169 0.83209 0.83218 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.67 71.98 0.70 -2.60 16 2 C -0.11 -2.46 5.40 30.59 0.17 -2.29 16 3 C -0.11 -3.13 2.59 -10.79 -0.03 -3.16 16 4 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.14 -3.88 8.52 71.98 0.61 -3.27 16 6 C 0.12 3.58 4.92 86.38 0.43 4.01 16 7 N -0.61 -22.38 2.70 -846.74 -2.28 -24.67 16 8 C 0.08 2.49 9.23 127.77 1.18 3.67 16 9 C 0.53 24.14 6.76 87.66 0.59 24.74 16 10 O -0.59 -29.96 14.47 -3.02 -0.04 -30.00 16 11 C 0.04 1.80 1.20 -13.03 -0.02 1.78 16 12 H 0.07 3.13 3.34 -2.39 -0.01 3.12 16 13 C -0.49 -27.58 8.21 25.60 0.21 -27.37 16 14 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 15 C 0.03 1.85 5.47 84.66 0.46 2.31 16 16 N -0.94 -56.27 13.96 21.45 0.30 -55.97 16 17 Si 0.92 39.63 26.73 68.60 1.83 41.47 16 18 H -0.24 -9.34 7.11 99.48 0.71 -8.64 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.23 -8.95 4.75 99.48 0.47 -8.48 16 21 C -0.07 -3.09 4.43 -19.87 -0.09 -3.18 16 22 C -0.10 -4.59 7.99 22.27 0.18 -4.41 16 23 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 24 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 25 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 26 C -0.14 -5.57 8.52 22.27 0.19 -5.38 16 27 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.26 6.57 -2.38 -0.02 1.24 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 1.33 5.43 -2.38 -0.01 1.32 16 34 H 0.05 1.42 6.56 -2.39 -0.02 1.40 16 35 H 0.06 2.06 7.42 -2.39 -0.02 2.04 16 36 H 0.11 2.34 7.89 -2.38 -0.02 2.32 16 37 H 0.05 1.71 6.38 -2.39 -0.02 1.69 16 38 H 0.06 2.02 5.86 -2.39 -0.01 2.01 16 39 H 0.10 2.23 7.89 -2.39 -0.02 2.21 16 40 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.08 4.39 7.58 -2.91 -0.02 4.37 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.15 3.56 8.06 -2.92 -0.02 3.53 16 44 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.13 4.36 7.01 -2.90 -0.02 4.34 16 Total: -1.00 -71.93 351.20 5.78 -66.14 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.73 Total: 31.21 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 5.25 Total: -28.18 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.99 Total: -80.64 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.04 Total: -30.00 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.83 Total: 41.47 kcal Total: -71.93 5.78 -66.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353546310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.950 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds