Wall clock time and date at job start Tue Mar 31 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47373 * 2 1 4 4 H 1.08999 * 109.46590 * 55.00065 * 3 2 1 5 5 C 1.52996 * 109.47013 * 295.00194 * 3 2 1 6 6 C 1.53000 * 109.47242 * 174.99983 * 3 2 1 7 7 H 1.08997 * 109.47336 * 305.00613 * 6 3 2 8 8 C 1.53000 * 109.46873 * 65.00191 * 6 3 2 9 9 N 1.46496 * 109.46834 * 184.99727 * 6 3 2 10 10 C 1.34783 * 119.99639 * 155.00020 * 9 6 3 11 11 O 1.21281 * 120.00007 * 0.02562 * 10 9 6 12 12 C 1.50693 * 120.00138 * 180.02562 * 10 9 6 13 13 H 1.09006 * 109.47207 * 300.00421 * 12 10 9 14 14 C 1.50706 * 109.46996 * 59.99882 * 12 10 9 15 15 H 1.07996 * 119.99377 * 26.77793 * 14 12 10 16 16 C 1.37877 * 120.00100 * 206.76309 * 14 12 10 17 17 N 1.31511 * 120.00102 * 353.18205 * 16 14 12 18 18 Si 1.86800 * 119.99802 * 173.44655 * 16 14 12 19 19 H 1.48500 * 109.46897 * 179.73219 * 18 16 14 20 20 H 1.48503 * 109.47422 * 299.73260 * 18 16 14 21 21 H 1.48503 * 109.47033 * 59.73164 * 18 16 14 22 22 C 1.50702 * 109.47407 * 180.02562 * 12 10 9 23 23 C 1.38230 * 120.00035 * 292.99342 * 22 12 10 24 24 C 1.38227 * 120.00096 * 179.78763 * 23 22 12 25 25 C 1.38237 * 120.00033 * 0.43760 * 24 23 22 26 26 C 1.38229 * 119.99662 * 359.81517 * 25 24 23 27 27 C 1.38234 * 119.99707 * 113.26131 * 22 12 10 28 28 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46769 * 299.99963 * 1 2 3 30 30 H 1.09000 * 109.47203 * 59.99283 * 1 2 3 31 31 H 1.09006 * 109.47222 * 240.00304 * 2 1 3 32 32 H 1.09001 * 109.47609 * 120.00366 * 2 1 3 33 33 H 1.09000 * 109.47336 * 299.99966 * 5 3 2 34 34 H 1.09007 * 109.47404 * 59.99627 * 5 3 2 35 35 H 1.08996 * 109.47135 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47516 * 179.97438 * 8 6 3 37 37 H 1.09005 * 109.47537 * 300.00132 * 8 6 3 38 38 H 1.09007 * 109.47349 * 59.99586 * 8 6 3 39 39 H 0.96996 * 120.00481 * 335.00488 * 9 6 3 40 40 H 0.97006 * 120.00141 * 354.82817 * 17 16 14 41 41 H 1.07999 * 119.99939 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00332 * 180.27357 * 24 23 22 43 43 H 1.08003 * 120.00141 * 179.83624 * 25 24 23 44 44 H 1.08007 * 119.99707 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.00396 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.8571 0.8799 1.0112 8 6 4.1798 0.7976 -1.1171 9 7 4.0433 2.8238 0.2457 10 6 5.2190 3.0788 0.8533 11 8 5.8812 2.1662 1.3002 12 6 5.7110 4.4977 0.9773 13 1 5.8290 4.9296 -0.0166 14 6 4.7122 5.3089 1.7620 15 1 4.0690 4.8240 2.4814 16 6 4.6199 6.6699 1.5617 17 7 5.4900 7.2812 0.7879 18 14 3.2633 7.6467 2.3953 19 1 3.3865 9.0797 2.0257 20 1 1.9413 7.1337 1.9544 21 1 3.3837 7.5033 3.8685 22 6 7.0387 4.5087 1.6902 23 6 7.1115 4.1436 3.0214 24 6 8.3299 4.1495 3.6741 25 6 9.4744 4.5291 2.9980 26 6 9.4008 4.8992 1.6682 27 6 8.1829 4.8892 1.0143 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5875 -2.1492 34 1 0.5489 2.1253 -1.3969 35 1 1.9982 3.1543 -1.3071 36 1 5.2661 0.7992 -1.0278 37 1 3.8238 -0.2288 -1.2065 38 1 3.8875 1.3619 -2.0027 39 1 3.5139 3.5536 -0.1120 40 1 6.2401 6.7893 0.4185 41 1 6.2167 3.8510 3.5508 42 1 8.3875 3.8600 4.7130 43 1 10.4260 4.5362 3.5087 44 1 10.2949 5.1961 1.1401 45 1 8.1255 5.1781 -0.0247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522466687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:11 Heat of formation + Delta-G solvation = -61.113290 kcal Electronic energy + Delta-G solvation = -23594.083128 eV Core-core repulsion = 20381.421670 eV Total energy + Delta-G solvation = -3212.661459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15228 -39.76470 -38.38541 -35.86223 -34.75294 -32.70718 -31.66033 -31.44642 -29.58097 -28.78918 -26.28664 -25.64818 -23.83800 -23.27555 -22.27007 -21.11880 -20.25329 -19.21696 -17.85197 -17.50855 -16.93594 -16.44445 -16.08662 -15.73706 -15.66072 -15.42803 -15.26527 -14.81176 -14.52824 -14.26684 -14.08992 -13.88319 -13.72144 -13.28168 -13.13189 -13.10006 -12.95101 -12.79597 -12.68129 -12.58993 -11.97723 -11.94296 -11.90953 -11.80333 -11.64019 -11.49099 -11.34465 -10.90792 -10.62600 -10.52905 -9.92926 -9.67489 -9.35233 -8.62538 -6.39505 0.63436 0.69554 1.55299 1.61120 1.80759 1.86910 2.46588 2.56815 3.08350 3.19561 3.71950 3.88444 4.02831 4.08633 4.19909 4.26107 4.31785 4.34951 4.37535 4.42381 4.52963 4.64022 4.66615 4.69972 4.75128 4.82143 4.88962 4.90477 4.98760 5.06764 5.14078 5.18641 5.21190 5.24338 5.28390 5.31102 5.52114 5.56872 5.66021 5.68855 5.71647 5.76984 6.04235 6.14212 6.29538 6.52756 6.72287 7.38831 7.47331 8.75144 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.005561 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.847101 B = 5034.174383 C = 6434.408203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.092 4.092 4 H 0.064 0.936 5 C -0.150 4.150 6 C 0.142 3.858 7 H 0.056 0.944 8 C -0.156 4.156 9 N -0.713 5.713 10 C 0.531 3.469 11 O -0.592 6.592 12 C 0.042 3.958 13 H 0.045 0.955 14 C -0.588 4.588 15 H 0.046 0.954 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 1.107 2.893 19 H -0.285 1.285 20 H -0.262 1.262 21 H -0.281 1.281 22 C -0.046 4.046 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.126 4.126 27 C -0.151 4.151 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.406 0.594 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.556 -9.974 -2.855 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.111 4.111 4 H 0.083 0.917 5 C -0.207 4.207 6 C 0.038 3.962 7 H 0.075 0.925 8 C -0.214 4.214 9 N -0.364 5.364 10 C 0.320 3.680 11 O -0.473 6.473 12 C 0.021 3.979 13 H 0.063 0.937 14 C -0.625 4.625 15 H 0.065 0.935 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.929 3.071 19 H -0.211 1.211 20 H -0.187 1.187 21 H -0.207 1.207 22 C -0.047 4.047 23 C -0.126 4.126 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.144 4.144 27 C -0.169 4.169 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.770 -9.125 -2.454 11.071 hybrid contribution 0.674 -0.951 -0.174 1.179 sum -5.096 -10.076 -2.628 11.594 Atomic orbital electron populations 1.21796 0.94579 1.02210 1.02122 1.21547 0.96852 0.94241 1.02502 1.21365 0.91916 0.98341 0.99444 0.91743 1.21960 1.02357 0.99857 0.96543 1.21036 0.94660 0.82139 0.98344 0.92533 1.22204 0.99578 1.01860 0.97758 1.46004 1.21604 1.09474 1.59335 1.21037 0.80683 0.91112 0.75208 1.90543 1.57995 1.48202 1.50580 1.18105 0.92192 0.90477 0.97130 0.93710 1.21631 1.20428 0.94639 1.25829 0.93534 1.27030 1.02022 0.96419 0.95598 1.70863 1.13270 1.40062 1.31392 0.83055 0.73756 0.74894 0.75376 1.21092 1.18697 1.20664 1.20183 0.94853 0.94832 0.94795 1.20806 0.97414 0.99790 0.94579 1.21359 0.92515 1.00750 1.00546 1.21316 0.98873 1.00938 0.94721 1.21325 0.97250 1.00245 0.95594 1.21163 0.93351 1.02691 0.99740 0.91735 0.93264 0.91713 0.90485 0.92489 0.91176 0.90715 0.93699 0.95252 0.89442 0.91072 0.75773 0.92445 0.89003 0.84499 0.83177 0.83894 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.67 71.98 0.70 -1.66 16 2 C -0.11 -2.13 5.03 30.60 0.15 -1.98 16 3 C -0.09 -2.17 2.32 -10.79 -0.03 -2.20 16 4 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.15 -3.10 8.33 71.98 0.60 -2.50 16 6 C 0.14 4.40 2.35 44.99 0.11 4.51 16 7 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 8 C -0.16 -4.24 8.75 71.98 0.63 -3.61 16 9 N -0.71 -27.10 4.91 -442.54 -2.17 -29.28 16 10 C 0.53 24.84 7.01 87.65 0.61 25.45 16 11 O -0.59 -30.29 15.12 -3.03 -0.05 -30.34 16 12 C 0.04 2.12 1.92 -13.03 -0.02 2.10 16 13 H 0.04 2.36 6.82 -2.38 -0.02 2.35 16 14 C -0.59 -30.86 7.43 25.60 0.19 -30.67 16 15 H 0.05 2.49 7.82 -2.91 -0.02 2.46 16 16 C -0.01 -0.49 5.45 84.65 0.46 -0.03 16 17 N -0.92 -52.54 13.56 21.45 0.29 -52.25 16 18 Si 1.11 47.44 29.91 68.60 2.05 49.50 16 19 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.05 -2.25 4.02 -19.87 -0.08 -2.33 16 23 C -0.11 -5.11 8.36 22.27 0.19 -4.92 16 24 C -0.13 -5.27 10.05 22.27 0.22 -5.04 16 25 C -0.14 -4.96 10.05 22.27 0.22 -4.73 16 26 C -0.13 -4.74 10.05 22.27 0.22 -4.52 16 27 C -0.15 -6.78 9.24 22.27 0.21 -6.57 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.92 6.56 -2.39 -0.02 0.91 16 31 H 0.08 1.27 6.81 -2.38 -0.02 1.25 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.30 6.34 -2.39 -0.02 1.29 16 34 H 0.07 1.29 6.57 -2.38 -0.02 1.28 16 35 H 0.04 1.05 6.77 -2.39 -0.02 1.03 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.88 6.68 -2.38 -0.02 1.86 16 38 H 0.07 1.74 6.35 -2.38 -0.02 1.73 16 39 H 0.41 14.83 7.06 -92.71 -0.65 14.18 16 40 H 0.26 15.25 6.29 -92.70 -0.58 14.67 16 41 H 0.09 4.58 7.86 -2.91 -0.02 4.55 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 45 H 0.11 4.67 7.96 -2.91 -0.02 4.65 16 Total: -1.00 -65.99 357.20 5.01 -60.98 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: 0.50 Total: 40.10 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 4.38 Total: -38.70 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.88 Total: -81.53 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.05 Total: 49.50 kcal Total: -65.99 5.01 -60.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522466687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.136 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds