Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 H 1.08993 * 109.46802 * 55.00100 * 3 2 1 5 5 C 1.52995 * 109.47076 * 294.99616 * 3 2 1 6 6 C 1.53004 * 109.46813 * 175.00001 * 3 2 1 7 7 H 1.08991 * 109.47790 * 60.00140 * 6 3 2 8 8 C 1.53004 * 109.47156 * 299.99627 * 6 3 2 9 9 N 1.46507 * 109.46624 * 180.02562 * 6 3 2 10 10 C 1.34774 * 119.99546 * 205.00049 * 9 6 3 11 11 O 1.21278 * 120.00364 * 359.97438 * 10 9 6 12 12 C 1.50698 * 119.99748 * 179.97438 * 10 9 6 13 13 H 1.08998 * 109.47226 * 299.99650 * 12 10 9 14 14 C 1.50699 * 109.47385 * 59.99653 * 12 10 9 15 15 H 1.08000 * 120.00059 * 235.34500 * 14 12 10 16 16 C 1.37873 * 119.99657 * 55.34872 * 14 12 10 17 17 N 1.31507 * 120.00559 * 1.98587 * 16 14 12 18 18 Si 1.86806 * 119.99651 * 181.98651 * 16 14 12 19 19 H 1.48492 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47113 * 120.00016 * 18 16 14 21 21 H 1.48506 * 109.47168 * 239.99769 * 18 16 14 22 22 C 1.50701 * 109.47429 * 179.97438 * 12 10 9 23 23 C 1.38238 * 120.00307 * 226.94246 * 22 12 10 24 24 C 1.38230 * 119.99932 * 179.78487 * 23 22 12 25 25 C 1.38236 * 120.00460 * 0.43692 * 24 23 22 26 26 C 1.38239 * 119.99423 * 359.81057 * 25 24 23 27 27 C 1.38227 * 120.00384 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47257 * 300.00290 * 1 2 3 30 30 H 1.09007 * 109.46677 * 60.00248 * 1 2 3 31 31 H 1.09005 * 109.47415 * 239.99713 * 2 1 3 32 32 H 1.09006 * 109.47046 * 120.00135 * 2 1 3 33 33 H 1.09004 * 109.47415 * 300.00288 * 5 3 2 34 34 H 1.09005 * 109.46853 * 60.00006 * 5 3 2 35 35 H 1.08994 * 109.47506 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.46891 * 60.00434 * 8 6 3 37 37 H 1.08998 * 109.46666 * 180.02562 * 8 6 3 38 38 H 1.09003 * 109.46903 * 300.00526 * 8 6 3 39 39 H 0.97000 * 119.99836 * 24.99365 * 9 6 3 40 40 H 0.96996 * 120.00856 * 179.97438 * 17 16 14 41 41 H 1.07995 * 119.99358 * 359.97438 * 23 22 12 42 42 H 1.08005 * 119.99733 * 180.27288 * 24 23 22 43 43 H 1.08001 * 119.99998 * 179.83606 * 25 24 23 44 44 H 1.07999 * 119.99739 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00075 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4441 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7601 1.4331 9 7 4.0532 2.8254 0.1263 10 6 5.3119 3.0953 -0.2728 11 8 6.0405 2.1947 -0.6320 12 6 5.8141 4.5161 -0.2727 13 1 5.1930 5.1210 -0.9333 14 6 5.7487 5.0720 1.1265 15 1 5.2070 5.9862 1.3196 16 6 6.3804 4.4135 2.1600 17 7 7.0727 3.3218 1.9186 18 14 6.2531 5.0723 3.9034 19 1 5.4240 6.3042 3.9078 20 1 5.6231 4.0481 4.7748 21 1 7.6114 5.3885 4.4136 22 6 7.2406 4.5449 -0.7579 23 6 8.1918 5.2703 -0.0653 24 6 9.5011 5.2930 -0.5079 25 6 9.8575 4.5976 -1.6483 26 6 8.9051 3.8763 -2.3438 27 6 7.5967 3.8500 -1.8987 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0700 1.5874 -2.1492 34 1 0.5490 2.1252 -1.3969 35 1 1.9983 3.1542 -1.3072 36 1 3.6062 -0.2675 1.4331 37 1 5.0559 0.7618 1.5228 38 1 3.5349 1.2992 2.2749 39 1 3.4706 3.5457 0.4139 40 1 7.5174 2.8587 2.6456 41 1 7.9126 5.8168 0.8233 42 1 10.2453 5.8562 0.0357 43 1 10.8800 4.6176 -1.9955 44 1 9.1836 3.3327 -3.2345 45 1 6.8527 3.2868 -2.4424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522466692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -35.017027 kcal Electronic energy + Delta-G solvation = -24055.060483 eV Core-core repulsion = 20843.530643 eV Total energy + Delta-G solvation = -3211.529840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.11690 -37.93634 -36.55515 -33.56187 -33.12652 -30.80244 -29.73824 -29.61846 -29.10266 -27.05846 -24.24184 -23.95439 -22.26121 -21.21755 -20.35063 -19.67550 -18.97175 -16.77134 -15.92437 -15.37377 -15.11388 -14.96612 -14.66201 -14.10335 -13.93043 -13.64599 -13.31999 -13.12683 -12.98612 -12.48203 -12.34842 -12.15626 -12.13430 -11.86867 -11.77731 -11.48886 -11.34977 -11.24436 -10.99013 -10.88866 -10.71324 -10.52964 -10.43340 -10.30160 -10.07373 -10.00934 -9.62211 -9.31133 -8.67267 -8.21431 -7.87515 -7.64121 -7.34763 -6.09777 -4.25648 2.59337 2.65632 3.20134 3.30901 3.31795 4.19406 4.29524 4.45740 4.94665 5.01791 5.04776 5.14915 5.18949 5.40115 5.59257 5.63032 5.76769 5.85681 5.89163 6.00007 6.01268 6.02508 6.09129 6.12136 6.14239 6.19160 6.22885 6.40418 6.43635 6.50884 6.56001 6.71348 6.75383 6.87557 6.95399 6.97843 7.18091 7.26161 7.58779 7.67107 7.71285 7.72624 7.84653 8.21174 8.32184 8.68397 8.89876 9.40642 9.80558 10.90358 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.005796 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.653604 B = 4829.492025 C = 6015.120847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.098 4.098 4 H 0.071 0.929 5 C -0.145 4.145 6 C 0.155 3.845 7 H 0.075 0.925 8 C -0.160 4.160 9 N -0.730 5.730 10 C 0.552 3.448 11 O -0.549 6.549 12 C 0.055 3.945 13 H 0.054 0.946 14 C -0.539 4.539 15 H 0.066 0.934 16 C 0.076 3.924 17 N -0.839 5.839 18 Si 0.883 3.117 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.012 4.012 23 C -0.066 4.066 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.100 4.100 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.393 0.607 40 H 0.263 0.737 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -1.976 -3.786 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.117 4.117 4 H 0.089 0.911 5 C -0.202 4.202 6 C 0.049 3.951 7 H 0.093 0.907 8 C -0.218 4.218 9 N -0.382 5.382 10 C 0.341 3.659 11 O -0.426 6.426 12 C 0.034 3.966 13 H 0.072 0.928 14 C -0.577 4.577 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.471 5.471 18 Si 0.710 3.290 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.013 4.013 23 C -0.084 4.084 24 C -0.166 4.166 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.226 0.774 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.686 -2.797 -3.969 9.091 hybrid contribution -0.109 0.366 1.493 1.541 sum -7.795 -2.431 -2.476 8.533 Atomic orbital electron populations 1.21812 0.96156 1.01137 1.01762 1.21603 0.95475 0.96361 1.02307 1.21431 0.95439 0.96302 0.98576 0.91076 1.21835 1.00346 1.01052 0.96972 1.20648 0.91639 0.84819 0.97967 0.90721 1.22193 1.03161 0.98842 0.97603 1.45851 1.15143 1.07157 1.70071 1.20918 0.79475 0.92216 0.73242 1.90526 1.54895 1.48626 1.48534 1.17896 0.90479 0.90652 0.97613 0.92765 1.20708 1.36149 1.10508 0.90311 0.91624 1.25021 0.94550 0.94848 0.98767 1.70080 1.29218 1.16002 1.31849 0.86668 0.78048 0.79087 0.85148 1.19576 1.21017 1.20887 1.19824 0.96584 0.93275 0.91609 1.21138 0.91312 0.97708 0.98214 1.20982 0.96699 1.01630 0.97312 1.20761 0.97960 1.00455 0.97218 1.20814 0.94081 1.01213 1.00178 1.20967 0.95610 0.98144 0.97101 0.93163 0.92907 0.92611 0.92034 0.91483 0.92936 0.92997 0.92215 0.93161 0.91364 0.93283 0.77361 0.92683 0.85514 0.88125 0.88284 0.88183 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.36 5.19 -26.73 -0.14 -1.50 16 3 C -0.10 -1.28 2.02 -90.62 -0.18 -1.46 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.14 -1.76 8.79 37.15 0.33 -1.44 16 6 C 0.15 2.63 2.16 -67.92 -0.15 2.49 16 7 H 0.07 1.41 7.58 -51.93 -0.39 1.01 16 8 C -0.16 -2.83 9.14 37.16 0.34 -2.49 16 9 N -0.73 -14.10 4.28 -53.80 -0.23 -14.33 16 10 C 0.55 12.82 5.42 -10.99 -0.06 12.76 16 11 O -0.55 -14.44 13.62 5.56 0.08 -14.36 16 12 C 0.05 1.28 2.78 -94.08 -0.26 1.02 16 13 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.54 -13.05 7.11 -34.44 -0.24 -13.30 16 15 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.08 1.91 4.00 -17.82 -0.07 1.84 16 17 N -0.84 -22.68 10.89 55.43 0.60 -22.07 16 18 Si 0.88 19.82 29.54 -169.99 -5.02 14.80 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.01 -0.29 4.51 -104.62 -0.47 -0.76 16 23 C -0.07 -1.55 8.20 -39.58 -0.32 -1.87 16 24 C -0.15 -3.14 10.05 -39.59 -0.40 -3.54 16 25 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 26 C -0.14 -3.01 10.05 -39.59 -0.40 -3.41 16 27 C -0.10 -2.29 8.21 -39.58 -0.33 -2.61 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.51 6.57 -51.92 -0.34 0.17 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 35 H 0.06 0.77 7.45 -51.93 -0.39 0.38 16 36 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.39 7.03 8.27 -40.82 -0.34 6.69 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.13 3.08 6.04 -52.49 -0.32 2.76 16 42 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 45 H 0.11 2.41 7.01 -52.49 -0.37 2.05 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -28.63 354.40 -8.96 -37.58 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.33 Total: 11.75 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.40 Total: -18.70 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.37 Total: -36.41 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.63 -8.96 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522466692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.567 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds