Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 H 1.08993 * 109.46802 * 55.00100 * 3 2 1 5 5 C 1.52995 * 109.47076 * 294.99616 * 3 2 1 6 6 C 1.53004 * 109.46813 * 175.00001 * 3 2 1 7 7 H 1.08991 * 109.47790 * 60.00140 * 6 3 2 8 8 C 1.53004 * 109.47156 * 299.99627 * 6 3 2 9 9 N 1.46507 * 109.46624 * 180.02562 * 6 3 2 10 10 C 1.34774 * 119.99546 * 205.00049 * 9 6 3 11 11 O 1.21278 * 120.00364 * 359.97438 * 10 9 6 12 12 C 1.50698 * 119.99748 * 179.97438 * 10 9 6 13 13 H 1.08998 * 109.47226 * 299.99650 * 12 10 9 14 14 C 1.50699 * 109.47385 * 59.99653 * 12 10 9 15 15 H 1.08000 * 120.00059 * 235.34500 * 14 12 10 16 16 C 1.37873 * 119.99657 * 55.34872 * 14 12 10 17 17 N 1.31507 * 120.00559 * 1.98587 * 16 14 12 18 18 Si 1.86806 * 119.99651 * 181.98651 * 16 14 12 19 19 H 1.48492 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47113 * 120.00016 * 18 16 14 21 21 H 1.48506 * 109.47168 * 239.99769 * 18 16 14 22 22 C 1.50701 * 109.47429 * 179.97438 * 12 10 9 23 23 C 1.38238 * 120.00307 * 226.94246 * 22 12 10 24 24 C 1.38230 * 119.99932 * 179.78487 * 23 22 12 25 25 C 1.38236 * 120.00460 * 0.43692 * 24 23 22 26 26 C 1.38239 * 119.99423 * 359.81057 * 25 24 23 27 27 C 1.38227 * 120.00384 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47257 * 300.00290 * 1 2 3 30 30 H 1.09007 * 109.46677 * 60.00248 * 1 2 3 31 31 H 1.09005 * 109.47415 * 239.99713 * 2 1 3 32 32 H 1.09006 * 109.47046 * 120.00135 * 2 1 3 33 33 H 1.09004 * 109.47415 * 300.00288 * 5 3 2 34 34 H 1.09005 * 109.46853 * 60.00006 * 5 3 2 35 35 H 1.08994 * 109.47506 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.46891 * 60.00434 * 8 6 3 37 37 H 1.08998 * 109.46666 * 180.02562 * 8 6 3 38 38 H 1.09003 * 109.46903 * 300.00526 * 8 6 3 39 39 H 0.97000 * 119.99836 * 24.99365 * 9 6 3 40 40 H 0.96996 * 120.00856 * 179.97438 * 17 16 14 41 41 H 1.07995 * 119.99358 * 359.97438 * 23 22 12 42 42 H 1.08005 * 119.99733 * 180.27288 * 24 23 22 43 43 H 1.08001 * 119.99998 * 179.83606 * 25 24 23 44 44 H 1.07999 * 119.99739 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00075 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4441 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7601 1.4331 9 7 4.0532 2.8254 0.1263 10 6 5.3119 3.0953 -0.2728 11 8 6.0405 2.1947 -0.6320 12 6 5.8141 4.5161 -0.2727 13 1 5.1930 5.1210 -0.9333 14 6 5.7487 5.0720 1.1265 15 1 5.2070 5.9862 1.3196 16 6 6.3804 4.4135 2.1600 17 7 7.0727 3.3218 1.9186 18 14 6.2531 5.0723 3.9034 19 1 5.4240 6.3042 3.9078 20 1 5.6231 4.0481 4.7748 21 1 7.6114 5.3885 4.4136 22 6 7.2406 4.5449 -0.7579 23 6 8.1918 5.2703 -0.0653 24 6 9.5011 5.2930 -0.5079 25 6 9.8575 4.5976 -1.6483 26 6 8.9051 3.8763 -2.3438 27 6 7.5967 3.8500 -1.8987 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0700 1.5874 -2.1492 34 1 0.5490 2.1252 -1.3969 35 1 1.9983 3.1542 -1.3072 36 1 3.6062 -0.2675 1.4331 37 1 5.0559 0.7618 1.5228 38 1 3.5349 1.2992 2.2749 39 1 3.4706 3.5457 0.4139 40 1 7.5174 2.8587 2.6456 41 1 7.9126 5.8168 0.8233 42 1 10.2453 5.8562 0.0357 43 1 10.8800 4.6176 -1.9955 44 1 9.1836 3.3327 -3.2345 45 1 6.8527 3.2868 -2.4424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522466692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -49.405090 kcal Electronic energy + Delta-G solvation = -24055.684396 eV Core-core repulsion = 20843.530643 eV Total energy + Delta-G solvation = -3212.153753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81136 -39.47102 -38.01872 -35.43891 -34.52395 -32.64011 -31.34391 -31.14656 -30.16256 -28.82051 -25.82092 -25.28782 -23.62267 -22.92417 -21.92612 -21.05910 -20.55281 -18.59251 -17.52304 -17.05721 -16.74288 -16.68561 -15.83650 -15.61406 -15.47251 -15.28980 -14.71373 -14.56024 -14.26267 -14.07064 -13.92833 -13.88901 -13.69817 -13.22481 -13.01909 -12.89100 -12.79186 -12.63241 -12.50091 -12.44413 -12.27947 -12.14569 -11.75557 -11.56456 -11.44264 -11.33290 -11.27433 -11.11821 -10.61968 -10.06574 -9.53992 -9.36095 -9.07662 -8.04066 -6.23326 0.89393 0.94574 1.39220 1.45646 1.53211 2.37237 2.50542 2.85076 3.23203 3.37515 3.79038 4.01362 4.11424 4.34907 4.36473 4.39871 4.46017 4.51131 4.57768 4.67502 4.70604 4.74852 4.81112 4.85427 4.93997 5.01846 5.03725 5.10817 5.13051 5.18317 5.18811 5.24238 5.32961 5.41890 5.47411 5.55389 5.57397 5.58926 5.73102 5.90155 5.95662 6.00341 6.12398 6.45108 6.54694 6.79457 7.19045 7.45115 8.03733 8.94455 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.005796 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.653604 B = 4829.492025 C = 6015.120847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.078 0.922 5 C -0.142 4.142 6 C 0.155 3.845 7 H 0.053 0.947 8 C -0.150 4.150 9 N -0.721 5.721 10 C 0.552 3.448 11 O -0.586 6.586 12 C 0.045 3.955 13 H 0.065 0.935 14 C -0.532 4.532 15 H 0.070 0.930 16 C 0.043 3.957 17 N -0.869 5.869 18 Si 0.936 3.064 19 H -0.259 1.259 20 H -0.290 1.290 21 H -0.289 1.289 22 C -0.033 4.033 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.118 4.118 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.019 0.981 38 H 0.050 0.950 39 H 0.401 0.599 40 H 0.253 0.747 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.129 0.871 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 -1.756 -3.951 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.097 0.903 5 C -0.199 4.199 6 C 0.050 3.950 7 H 0.072 0.928 8 C -0.208 4.208 9 N -0.372 5.372 10 C 0.341 3.659 11 O -0.465 6.465 12 C 0.024 3.976 13 H 0.083 0.917 14 C -0.570 4.570 15 H 0.088 0.912 16 C -0.162 4.162 17 N -0.503 5.503 18 Si 0.763 3.237 19 H -0.183 1.183 20 H -0.216 1.216 21 H -0.215 1.215 22 C -0.034 4.034 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.165 4.165 27 C -0.136 4.136 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.235 0.765 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.677 -2.549 -4.128 9.942 hybrid contribution 0.197 0.306 1.488 1.532 sum -8.480 -2.243 -2.640 9.161 Atomic orbital electron populations 1.21778 0.94283 1.02113 1.02264 1.21593 0.97037 0.94766 1.02191 1.21360 0.91904 0.97986 0.99413 0.90322 1.21816 1.01870 1.00145 0.96087 1.20784 0.94482 0.83054 0.96701 0.92839 1.22094 0.99844 1.00877 0.98008 1.45770 1.14090 1.08572 1.68744 1.20885 0.80231 0.91753 0.73037 1.90493 1.56188 1.49466 1.50393 1.18019 0.91041 0.91045 0.97534 0.91734 1.20878 1.35205 1.10196 0.90719 0.91234 1.25518 0.94306 0.94845 1.01512 1.70245 1.30652 1.17407 1.32000 0.85834 0.77611 0.78714 0.81550 1.18306 1.21607 1.21518 1.19943 0.96899 0.94153 0.92391 1.21124 0.92642 0.98626 0.98225 1.21308 0.96225 1.01654 0.97854 1.21166 0.99600 0.98983 0.96275 1.21187 0.93279 1.00964 1.01039 1.21029 0.96742 0.98594 0.97255 0.92037 0.92503 0.91985 0.92195 0.91643 0.93590 0.90542 0.93171 0.90305 0.96178 0.93110 0.76456 0.93739 0.87068 0.85679 0.84474 0.85338 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 71.98 0.70 -1.69 16 2 C -0.12 -2.45 5.19 30.59 0.16 -2.29 16 3 C -0.09 -2.16 2.02 -10.79 -0.02 -2.18 16 4 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.14 -3.24 8.79 71.98 0.63 -2.60 16 6 C 0.15 5.30 2.16 44.99 0.10 5.40 16 7 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 8 C -0.15 -5.38 9.14 71.98 0.66 -4.72 16 9 N -0.72 -28.27 4.28 -442.53 -1.90 -30.16 16 10 C 0.55 26.34 5.42 87.66 0.48 26.82 16 11 O -0.59 -32.01 13.62 -3.02 -0.04 -32.05 16 12 C 0.04 2.14 2.78 -13.03 -0.04 2.10 16 13 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.53 -25.99 7.11 25.60 0.18 -25.81 16 15 H 0.07 3.28 7.81 -2.91 -0.02 3.25 16 16 C 0.04 2.17 4.00 84.65 0.34 2.51 16 17 N -0.87 -48.26 10.89 21.44 0.23 -48.02 16 18 Si 0.94 40.97 29.54 68.60 2.03 43.00 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.03 -1.61 4.51 -19.86 -0.09 -1.70 16 23 C -0.09 -4.19 8.20 22.27 0.18 -4.01 16 24 C -0.15 -6.30 10.05 22.27 0.22 -6.07 16 25 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16 26 C -0.15 -5.92 10.05 22.27 0.22 -5.70 16 27 C -0.12 -5.46 8.21 22.27 0.18 -5.28 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.94 6.57 -2.38 -0.02 0.92 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.38 6.17 -2.38 -0.01 1.36 16 33 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.38 6.57 -2.38 -0.02 1.37 16 35 H 0.05 1.23 7.45 -2.39 -0.02 1.21 16 36 H 0.08 2.32 6.32 -2.39 -0.02 2.31 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.40 14.30 8.27 -92.71 -0.77 13.54 16 40 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.11 5.52 6.04 -2.91 -0.02 5.50 16 42 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 44 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 45 H 0.10 4.60 7.01 -2.91 -0.02 4.58 16 Total: -1.00 -63.05 354.40 4.65 -58.40 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: 0.20 Total: 39.25 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.13 Total: -30.40 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.66 Total: -78.19 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.04 Total: -32.05 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -63.05 4.65 -58.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522466692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.993 kcal (2) G-P(sol) polarization free energy of solvation -63.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds