Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47497 * 2 1 4 4 N 1.46497 * 109.47400 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00008 * 270.00023 * 4 3 2 6 6 C 1.53005 * 109.46994 * 268.94635 * 5 4 3 7 7 C 1.52993 * 109.47109 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00140 * 89.99649 * 4 3 2 9 9 O 1.21278 * 120.00246 * 4.41888 * 8 4 3 10 10 C 1.50700 * 119.99987 * 184.42222 * 8 4 3 11 11 H 1.09006 * 109.47093 * 332.83813 * 10 8 4 12 12 C 1.50693 * 109.47395 * 92.84261 * 10 8 4 13 13 H 1.07998 * 119.99866 * 236.66670 * 12 10 8 14 14 C 1.37881 * 120.00276 * 56.39257 * 12 10 8 15 15 N 1.31520 * 119.99576 * 8.36091 * 14 12 10 16 16 Si 1.86797 * 120.00255 * 188.36097 * 14 12 10 17 17 H 1.48493 * 109.47224 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.46923 * 120.00027 * 16 14 12 19 19 H 1.48501 * 109.46854 * 239.99760 * 16 14 12 20 20 C 1.50706 * 109.47138 * 212.84468 * 10 8 4 21 21 C 1.38234 * 120.00052 * 217.33748 * 20 10 8 22 22 C 1.38237 * 119.99928 * 179.81199 * 21 20 10 23 23 C 1.38233 * 119.99897 * 0.39144 * 22 21 20 24 24 C 1.38233 * 119.99872 * 359.85636 * 23 22 21 25 25 C 1.38233 * 119.99700 * 37.60755 * 20 10 8 26 26 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46939 * 300.00122 * 1 2 3 28 28 H 1.09004 * 109.46885 * 59.99997 * 1 2 3 29 29 H 1.09005 * 109.47085 * 239.99349 * 2 1 3 30 30 H 1.09004 * 109.47394 * 120.00137 * 2 1 3 31 31 H 1.08997 * 109.47198 * 59.99394 * 3 2 1 32 32 H 1.09007 * 109.46575 * 299.99742 * 3 2 1 33 33 H 1.08998 * 109.46962 * 28.93883 * 5 4 3 34 34 H 1.08994 * 109.47598 * 148.94303 * 5 4 3 35 35 H 1.09005 * 109.46767 * 299.99826 * 6 5 4 36 36 H 1.08994 * 109.47219 * 59.99435 * 6 5 4 37 37 H 1.09003 * 109.47239 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46871 * 299.99262 * 7 6 5 39 39 H 1.08994 * 109.47575 * 59.99611 * 7 6 5 40 40 H 0.97000 * 120.00008 * 180.02562 * 15 14 12 41 41 H 1.07998 * 119.99847 * 359.97438 * 21 20 10 42 42 H 1.07997 * 119.99843 * 180.23490 * 22 21 20 43 43 H 1.07999 * 119.99624 * 179.83990 * 23 22 21 44 44 H 1.08002 * 119.99329 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00649 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2381 1.4422 1.2678 6 6 4.5163 2.8845 1.6963 7 6 5.2823 2.8843 3.0206 8 6 4.1785 1.4425 -1.1681 9 8 3.5744 1.5236 -2.2166 10 6 5.6821 1.3419 -1.1706 11 1 6.0751 1.7500 -0.2394 12 6 6.0886 -0.1037 -1.2967 13 1 6.7259 -0.5526 -0.5491 14 6 5.6424 -0.8549 -2.3633 15 7 5.0012 -0.2742 -3.3539 16 14 5.9485 -2.6972 -2.4013 17 1 6.6859 -3.1018 -1.1775 18 1 4.6492 -3.4138 -2.4566 19 1 6.7545 -3.0404 -3.6004 20 6 6.2359 2.1228 -2.3345 21 6 7.3331 1.6461 -3.0272 22 6 7.8387 2.3605 -4.0973 23 6 7.2520 3.5555 -4.4696 24 6 6.1579 4.0347 -3.7736 25 6 5.6500 3.3185 -2.7059 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.6412 0.9449 2.0323 34 1 5.1821 0.9121 1.1419 35 1 5.1131 3.3819 0.9318 36 1 3.5723 3.4146 1.8222 37 1 5.4809 3.9117 3.3257 38 1 4.6858 2.3868 3.7853 39 1 6.2263 2.3543 2.8943 40 1 4.6869 -0.8027 -4.1042 41 1 7.7937 0.7144 -2.7340 42 1 8.6935 1.9862 -4.6408 43 1 7.6486 4.1149 -5.3039 44 1 5.6998 4.9685 -4.0643 45 1 4.7952 3.6929 -2.1623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532491216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -34.973962 kcal Electronic energy + Delta-G solvation = -24429.949154 eV Core-core repulsion = 21218.421181 eV Total energy + Delta-G solvation = -3211.527972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92692 -39.33186 -37.01931 -35.59341 -34.88136 -32.86942 -32.53823 -31.38164 -29.27179 -27.59423 -26.53850 -25.25118 -23.05683 -22.78463 -22.54717 -21.73198 -19.74422 -18.54787 -17.62751 -17.44826 -16.72576 -16.56042 -15.60670 -15.57514 -15.51637 -15.40787 -15.19962 -14.52903 -14.17740 -14.17377 -13.94984 -13.82846 -13.36919 -13.04770 -12.99872 -12.98799 -12.83624 -12.80403 -12.52428 -12.40010 -12.20228 -12.14007 -12.00326 -11.76145 -11.61118 -11.49228 -11.35896 -11.18096 -10.56218 -9.99808 -9.42523 -9.21236 -9.06490 -7.97278 -6.19757 0.87398 0.94390 1.35577 1.40661 1.48672 2.34035 2.46317 2.56388 3.24608 3.32176 3.97537 4.10835 4.13495 4.26892 4.30867 4.35360 4.41336 4.42271 4.50621 4.59426 4.63054 4.69158 4.73958 4.81739 4.89185 4.94203 4.97812 5.03130 5.11761 5.14820 5.15339 5.26408 5.29353 5.32920 5.40082 5.47866 5.51357 5.56358 5.71565 5.88289 5.95658 6.01691 6.10508 6.42824 6.53210 6.70525 7.01882 7.45844 8.00239 8.94993 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.007608 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.326975 B = 3679.621050 C = 4634.992326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.122 3.878 4 N -0.632 5.632 5 C 0.112 3.888 6 C -0.135 4.135 7 C -0.142 4.142 8 C 0.526 3.474 9 O -0.552 6.552 10 C 0.058 3.942 11 H 0.063 0.937 12 C -0.541 4.541 13 H 0.066 0.934 14 C 0.036 3.964 15 N -0.841 5.841 16 Si 0.929 3.071 17 H -0.258 1.258 18 H -0.294 1.294 19 H -0.284 1.284 20 C -0.022 4.022 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.249 0.751 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 5.538 9.891 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.001 4.001 4 N -0.366 5.366 5 C -0.011 4.011 6 C -0.174 4.174 7 C -0.200 4.200 8 C 0.317 3.683 9 O -0.428 6.428 10 C 0.037 3.963 11 H 0.081 0.919 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.171 4.171 15 N -0.473 5.473 16 Si 0.756 3.244 17 H -0.182 1.182 18 H -0.221 1.221 19 H -0.210 1.210 20 C -0.023 4.023 21 C -0.110 4.110 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.157 4.157 25 C -0.151 4.151 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.030 5.561 9.121 10.874 hybrid contribution -0.132 -1.443 -0.605 1.570 sum -2.162 4.119 8.516 9.704 Atomic orbital electron populations 1.21632 0.93400 1.02157 1.02369 1.21809 0.97404 0.97459 1.00499 1.21340 0.80342 0.96344 1.02082 1.48162 1.06032 1.75854 1.06560 1.21680 0.97398 0.97344 0.84699 1.21906 1.00841 0.96450 0.98193 1.21656 1.00147 1.02408 0.95796 1.21348 0.91303 0.73268 0.82416 1.90578 1.70872 1.48859 1.32501 1.17993 0.88684 0.95990 0.93665 0.91880 1.20784 1.33219 0.94393 1.09449 0.91581 1.25619 0.95059 1.01026 0.95366 1.70420 1.34625 1.35144 1.07128 0.85940 0.77309 0.82714 0.78432 1.18204 1.22126 1.20970 1.20008 0.93398 0.91947 0.96949 1.20992 0.96531 0.98245 0.95232 1.21305 1.01037 0.96029 0.97739 1.21147 0.97314 0.97041 1.00834 1.21151 0.97666 1.00442 0.96418 1.20909 0.98990 0.96145 0.99065 0.92258 0.90259 0.93518 0.96376 0.91390 0.88290 0.93272 0.89258 0.91113 0.93862 0.91403 0.91739 0.91247 0.92824 0.94141 0.87356 0.85429 0.84370 0.85341 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.13 -4.40 6.26 30.59 0.19 -4.21 16 3 C 0.12 4.12 5.44 86.38 0.47 4.58 16 4 N -0.63 -24.44 2.47 -821.82 -2.03 -26.47 16 5 C 0.11 3.40 5.01 86.38 0.43 3.83 16 6 C -0.14 -3.47 6.10 30.59 0.19 -3.28 16 7 C -0.14 -2.80 9.91 71.98 0.71 -2.09 16 8 C 0.53 25.60 5.29 87.66 0.46 26.06 16 9 O -0.55 -31.51 12.98 -3.02 -0.04 -31.55 16 10 C 0.06 2.81 2.03 -13.03 -0.03 2.78 16 11 H 0.06 2.79 5.67 -2.38 -0.01 2.78 16 12 C -0.54 -27.93 7.03 25.60 0.18 -27.75 16 13 H 0.07 3.30 7.83 -2.91 -0.02 3.28 16 14 C 0.04 1.95 4.50 84.65 0.38 2.33 16 15 N -0.84 -49.27 9.78 21.45 0.21 -49.06 16 16 Si 0.93 43.20 29.55 68.60 2.03 45.22 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 C -0.02 -1.08 4.21 -19.86 -0.08 -1.16 16 21 C -0.09 -4.35 8.34 22.27 0.19 -4.16 16 22 C -0.14 -5.83 10.05 22.27 0.22 -5.61 16 23 C -0.15 -5.47 10.05 22.27 0.22 -5.24 16 24 C -0.14 -5.57 10.05 22.27 0.22 -5.34 16 25 C -0.13 -6.15 8.50 22.27 0.19 -5.96 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.10 2.53 8.07 -2.39 -0.02 2.51 16 32 H 0.05 1.91 7.36 -2.38 -0.02 1.89 16 33 H 0.09 2.22 8.06 -2.39 -0.02 2.21 16 34 H 0.07 2.42 6.21 -2.39 -0.01 2.40 16 35 H 0.04 1.30 7.64 -2.38 -0.02 1.29 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.11 5.34 6.63 -2.91 -0.02 5.32 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.09 4.21 7.12 -2.91 -0.02 4.19 16 Total: -1.00 -67.75 359.13 5.77 -61.98 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.94 Total: 27.86 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 4.67 Total: -27.98 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.82 Total: -75.53 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.04 Total: -31.55 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.75 5.77 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532491216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.002 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds