Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 N 1.46496 * 109.46996 * 178.55321 * 3 2 1 5 5 C 1.46497 * 119.99913 * 89.20490 * 4 3 2 6 6 C 1.53009 * 109.47067 * 269.99605 * 5 4 3 7 7 C 1.52996 * 109.47246 * 180.02562 * 6 5 4 8 8 C 1.34776 * 120.00257 * 269.20051 * 4 3 2 9 9 O 1.21280 * 120.00338 * 176.88244 * 8 4 3 10 10 C 1.50706 * 119.99789 * 356.88465 * 8 4 3 11 11 H 1.09001 * 109.47116 * 44.03136 * 10 8 4 12 12 C 1.50699 * 109.47172 * 284.03257 * 10 8 4 13 13 H 1.07996 * 119.99878 * 335.23395 * 12 10 8 14 14 C 1.37881 * 119.99972 * 155.23209 * 12 10 8 15 15 N 1.31512 * 120.00018 * 185.21551 * 14 12 10 16 16 Si 1.86791 * 119.99814 * 5.21656 * 14 12 10 17 17 H 1.48503 * 109.47498 * 84.73475 * 16 14 12 18 18 H 1.48505 * 109.46894 * 204.73057 * 16 14 12 19 19 H 1.48503 * 109.47580 * 324.73227 * 16 14 12 20 20 C 1.50703 * 109.46916 * 164.03438 * 10 8 4 21 21 C 1.38234 * 119.99806 * 246.96968 * 20 10 8 22 22 C 1.38235 * 120.00050 * 180.02562 * 21 20 10 23 23 C 1.38234 * 119.99916 * 359.95641 * 22 21 20 24 24 C 1.38237 * 120.00020 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00067 * 66.95266 * 20 10 8 26 26 H 1.08997 * 109.47196 * 59.99272 * 1 2 3 27 27 H 1.08989 * 109.47563 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46779 * 300.00250 * 1 2 3 29 29 H 1.08996 * 109.46705 * 239.99798 * 2 1 3 30 30 H 1.08998 * 109.46903 * 120.00277 * 2 1 3 31 31 H 1.08998 * 109.46847 * 58.55837 * 3 2 1 32 32 H 1.09001 * 109.47019 * 298.55547 * 3 2 1 33 33 H 1.08997 * 109.47409 * 29.99649 * 5 4 3 34 34 H 1.09004 * 109.47119 * 150.00064 * 5 4 3 35 35 H 1.08997 * 109.47042 * 300.00269 * 6 5 4 36 36 H 1.08994 * 109.46684 * 60.00332 * 6 5 4 37 37 H 1.09007 * 109.47207 * 300.00097 * 7 6 5 38 38 H 1.09002 * 109.47382 * 59.99846 * 7 6 5 39 39 H 1.08994 * 109.47644 * 180.02562 * 7 6 5 40 40 H 0.96996 * 120.00282 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.00018 * 359.97438 * 21 20 10 42 42 H 1.07998 * 119.99863 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.00142 * 179.71962 * 23 22 21 44 44 H 1.08000 * 120.00005 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00314 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5046 1.4425 0.0349 5 6 4.2671 1.4143 -1.2157 6 6 4.5319 -0.0378 -1.6189 7 6 5.3287 -0.0673 -2.9247 8 6 4.1506 1.4687 1.2175 9 8 5.3617 1.4116 1.2484 10 6 3.3680 1.5687 2.5015 11 1 2.5144 0.8920 2.4604 12 6 2.8796 2.9828 2.6832 13 1 3.4040 3.8001 2.2106 14 6 1.7632 3.2330 3.4528 15 7 1.2766 4.4524 3.5285 16 14 0.9421 1.8400 4.3879 17 1 1.6283 1.6461 5.6905 18 1 -0.4846 2.1767 4.6254 19 1 1.0297 0.5897 3.5913 20 6 4.2538 1.1904 3.6605 21 6 3.9952 0.0395 4.3811 22 6 4.8074 -0.3073 5.4446 23 6 5.8788 0.4963 5.7868 24 6 6.1383 1.6465 5.0652 25 6 5.3252 1.9940 4.0026 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6558 1.9637 0.8768 32 1 1.6981 1.9488 -0.9027 33 1 3.6965 1.9109 -2.0005 34 1 5.2164 1.9309 -1.0742 35 1 5.1024 -0.5345 -0.8342 36 1 3.5826 -0.5544 -1.7604 37 1 4.7585 0.4295 -3.7097 38 1 6.2780 0.4492 -2.7828 39 1 5.5170 -1.1017 -3.2122 40 1 0.4915 4.6286 4.0701 41 1 3.1580 -0.5883 4.1139 42 1 4.6050 -1.2063 6.0079 43 1 6.5107 0.2278 6.6204 44 1 6.9752 2.2746 5.3328 45 1 5.5277 2.8928 3.4392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532491217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -30.232164 kcal Electronic energy + Delta-G solvation = -24264.033879 eV Core-core repulsion = 21052.711527 eV Total energy + Delta-G solvation = -3211.322353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63682 -38.11603 -35.86070 -34.22778 -33.28328 -31.83684 -31.44178 -30.10699 -28.02049 -26.39615 -25.29602 -23.43660 -21.91981 -21.80665 -20.99526 -20.54615 -18.33261 -17.09650 -16.51148 -16.14703 -15.55751 -14.78488 -14.46283 -14.38153 -14.21456 -14.12992 -13.79685 -13.17380 -12.93492 -12.75980 -12.66999 -12.52000 -12.25126 -12.07562 -11.92594 -11.77015 -11.68198 -11.37819 -11.15121 -11.05779 -10.96807 -10.80598 -10.62179 -10.46525 -10.23368 -10.08499 -9.89800 -9.51620 -8.90212 -8.65540 -8.10226 -8.03038 -7.79124 -6.29251 -4.32199 2.16032 2.23877 3.16645 3.24620 3.30645 3.59625 3.69988 4.23829 4.63774 5.01258 5.08147 5.15780 5.28714 5.33809 5.43612 5.45798 5.56723 5.62820 5.65450 5.74099 5.78476 5.85817 5.93465 5.97898 5.98977 6.07984 6.10206 6.12849 6.30067 6.33036 6.35209 6.37864 6.38613 6.49529 6.51818 6.69595 6.76377 6.89430 7.18081 7.23684 7.29518 7.32434 7.63573 7.82359 8.09243 8.27513 8.71834 9.09364 9.28292 10.81463 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.007591 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.392213 B = 3687.826310 C = 4852.895040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.103 3.897 4 N -0.612 5.612 5 C 0.118 3.882 6 C -0.141 4.141 7 C -0.147 4.147 8 C 0.541 3.459 9 O -0.557 6.557 10 C 0.023 3.977 11 H 0.067 0.933 12 C -0.505 4.505 13 H 0.081 0.919 14 C 0.088 3.912 15 N -0.882 5.882 16 Si 0.860 3.140 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.259 1.259 20 C -0.038 4.038 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.064 4.064 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.269 0.731 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -8.907 -6.312 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C -0.020 4.020 4 N -0.344 5.344 5 C -0.005 4.005 6 C -0.179 4.179 7 C -0.205 4.205 8 C 0.332 3.668 9 O -0.435 6.435 10 C 0.002 3.998 11 H 0.085 0.915 12 C -0.543 4.543 13 H 0.099 0.901 14 C -0.117 4.117 15 N -0.518 5.518 16 Si 0.686 3.314 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.184 1.184 20 C -0.039 4.039 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.082 4.082 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.642 -8.776 -6.211 10.876 hybrid contribution -0.651 -0.653 0.625 1.114 sum 0.992 -9.429 -5.587 11.005 Atomic orbital electron populations 1.21701 0.95556 1.01318 1.02189 1.22051 0.95916 0.98280 1.01981 1.21827 0.79434 0.95976 1.04802 1.47807 1.06627 1.74529 1.05386 1.21373 0.97236 0.96050 0.85889 1.21974 1.00324 0.98038 0.97604 1.21688 1.00279 1.01340 0.97183 1.20989 0.87761 0.72816 0.85255 1.90575 1.14755 1.50638 1.87494 1.18574 0.93884 1.00290 0.87081 0.91536 1.20439 1.11941 0.89124 1.32771 0.90089 1.24894 0.96088 0.95428 0.95294 1.69859 1.23078 1.19806 1.39056 0.87116 0.78862 0.83204 0.82184 1.19078 1.21235 1.18422 1.20197 0.94602 0.92204 0.96865 1.21007 1.00081 0.97233 0.97426 1.20870 0.96334 0.99658 0.98083 1.20870 0.98504 0.96208 1.00390 1.21067 0.99922 0.97207 0.96800 1.20906 0.93376 0.98853 0.95103 0.92711 0.93009 0.92236 0.92207 0.91976 0.87094 0.91446 0.91441 0.90487 0.91672 0.92006 0.92914 0.92644 0.92968 0.92132 0.87439 0.87316 0.87342 0.87089 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.14 -2.07 6.15 -26.73 -0.16 -2.24 16 3 C 0.10 1.71 5.06 -4.04 -0.02 1.69 16 4 N -0.61 -11.25 2.47 -173.68 -0.43 -11.68 16 5 C 0.12 1.83 5.43 -4.04 -0.02 1.81 16 6 C -0.14 -1.92 6.26 -26.73 -0.17 -2.08 16 7 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 8 C 0.54 11.89 6.82 -10.98 -0.07 11.82 16 9 O -0.56 -13.37 14.84 5.56 0.08 -13.29 16 10 C 0.02 0.53 1.05 -94.07 -0.10 0.43 16 11 H 0.07 1.48 3.88 -51.93 -0.20 1.28 16 12 C -0.51 -13.04 6.76 -34.44 -0.23 -13.28 16 13 H 0.08 2.34 8.05 -52.49 -0.42 1.91 16 14 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 15 N -0.88 -24.87 13.96 55.43 0.77 -24.10 16 16 Si 0.86 20.04 25.92 -169.99 -4.41 15.64 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.26 -5.56 6.14 56.52 0.35 -5.21 16 20 C -0.04 -0.86 3.71 -104.63 -0.39 -1.24 16 21 C -0.14 -2.88 8.54 -39.58 -0.34 -3.22 16 22 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 23 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 24 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.06 -1.44 8.06 -39.58 -0.32 -1.76 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.58 8.14 -51.94 -0.42 0.16 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.78 6.26 -51.93 -0.33 0.45 16 30 H 0.06 0.99 7.46 -51.93 -0.39 0.60 16 31 H 0.11 2.19 5.48 -51.93 -0.28 1.90 16 32 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.07 0.90 7.90 -51.93 -0.41 0.49 16 34 H 0.08 1.31 7.47 -51.93 -0.39 0.93 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.79 6.26 -51.93 -0.32 0.46 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.11 2.07 7.96 -52.49 -0.42 1.65 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.12 2.83 7.82 -52.49 -0.41 2.42 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -29.40 356.71 -8.38 -37.78 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.40 Total: 7.63 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.38 Total: -17.35 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.34 Total: -35.78 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.41 Total: 15.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.40 -8.38 -37.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532491217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.546 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds