Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 N 1.46496 * 109.46996 * 178.55321 * 3 2 1 5 5 C 1.46497 * 119.99913 * 89.20490 * 4 3 2 6 6 C 1.53009 * 109.47067 * 269.99605 * 5 4 3 7 7 C 1.52996 * 109.47246 * 180.02562 * 6 5 4 8 8 C 1.34776 * 120.00257 * 269.20051 * 4 3 2 9 9 O 1.21280 * 120.00338 * 176.88244 * 8 4 3 10 10 C 1.50706 * 119.99789 * 356.88465 * 8 4 3 11 11 H 1.09001 * 109.47116 * 44.03136 * 10 8 4 12 12 C 1.50699 * 109.47172 * 284.03257 * 10 8 4 13 13 H 1.07996 * 119.99878 * 335.23395 * 12 10 8 14 14 C 1.37881 * 119.99972 * 155.23209 * 12 10 8 15 15 N 1.31512 * 120.00018 * 185.21551 * 14 12 10 16 16 Si 1.86791 * 119.99814 * 5.21656 * 14 12 10 17 17 H 1.48503 * 109.47498 * 84.73475 * 16 14 12 18 18 H 1.48505 * 109.46894 * 204.73057 * 16 14 12 19 19 H 1.48503 * 109.47580 * 324.73227 * 16 14 12 20 20 C 1.50703 * 109.46916 * 164.03438 * 10 8 4 21 21 C 1.38234 * 119.99806 * 246.96968 * 20 10 8 22 22 C 1.38235 * 120.00050 * 180.02562 * 21 20 10 23 23 C 1.38234 * 119.99916 * 359.95641 * 22 21 20 24 24 C 1.38237 * 120.00020 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00067 * 66.95266 * 20 10 8 26 26 H 1.08997 * 109.47196 * 59.99272 * 1 2 3 27 27 H 1.08989 * 109.47563 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46779 * 300.00250 * 1 2 3 29 29 H 1.08996 * 109.46705 * 239.99798 * 2 1 3 30 30 H 1.08998 * 109.46903 * 120.00277 * 2 1 3 31 31 H 1.08998 * 109.46847 * 58.55837 * 3 2 1 32 32 H 1.09001 * 109.47019 * 298.55547 * 3 2 1 33 33 H 1.08997 * 109.47409 * 29.99649 * 5 4 3 34 34 H 1.09004 * 109.47119 * 150.00064 * 5 4 3 35 35 H 1.08997 * 109.47042 * 300.00269 * 6 5 4 36 36 H 1.08994 * 109.46684 * 60.00332 * 6 5 4 37 37 H 1.09007 * 109.47207 * 300.00097 * 7 6 5 38 38 H 1.09002 * 109.47382 * 59.99846 * 7 6 5 39 39 H 1.08994 * 109.47644 * 180.02562 * 7 6 5 40 40 H 0.96996 * 120.00282 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.00018 * 359.97438 * 21 20 10 42 42 H 1.07998 * 119.99863 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.00142 * 179.71962 * 23 22 21 44 44 H 1.08000 * 120.00005 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00314 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5046 1.4425 0.0349 5 6 4.2671 1.4143 -1.2157 6 6 4.5319 -0.0378 -1.6189 7 6 5.3287 -0.0673 -2.9247 8 6 4.1506 1.4687 1.2175 9 8 5.3617 1.4116 1.2484 10 6 3.3680 1.5687 2.5015 11 1 2.5144 0.8920 2.4604 12 6 2.8796 2.9828 2.6832 13 1 3.4040 3.8001 2.2106 14 6 1.7632 3.2330 3.4528 15 7 1.2766 4.4524 3.5285 16 14 0.9421 1.8400 4.3879 17 1 1.6283 1.6461 5.6905 18 1 -0.4846 2.1767 4.6254 19 1 1.0297 0.5897 3.5913 20 6 4.2538 1.1904 3.6605 21 6 3.9952 0.0395 4.3811 22 6 4.8074 -0.3073 5.4446 23 6 5.8788 0.4963 5.7868 24 6 6.1383 1.6465 5.0652 25 6 5.3252 1.9940 4.0026 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6558 1.9637 0.8768 32 1 1.6981 1.9488 -0.9027 33 1 3.6965 1.9109 -2.0005 34 1 5.2164 1.9309 -1.0742 35 1 5.1024 -0.5345 -0.8342 36 1 3.5826 -0.5544 -1.7604 37 1 4.7585 0.4295 -3.7097 38 1 6.2780 0.4492 -2.7828 39 1 5.5170 -1.1017 -3.2122 40 1 0.4915 4.6286 4.0701 41 1 3.1580 -0.5883 4.1139 42 1 4.6050 -1.2063 6.0079 43 1 6.5107 0.2278 6.6204 44 1 6.9752 2.2746 5.3328 45 1 5.5277 2.8928 3.4392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532491217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -45.575595 kcal Electronic energy + Delta-G solvation = -24264.699220 eV Core-core repulsion = 21052.711527 eV Total energy + Delta-G solvation = -3211.987694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26526 -39.64020 -37.37365 -35.77992 -34.77622 -33.33649 -33.01762 -31.65288 -29.65181 -27.64840 -26.76458 -25.15417 -23.38933 -23.19459 -22.23812 -21.96352 -19.92170 -19.08780 -18.14872 -17.64277 -17.06398 -16.46601 -15.92818 -15.77399 -15.68231 -15.44523 -15.24080 -14.86132 -14.40241 -14.32808 -14.06881 -13.93067 -13.71490 -13.47027 -13.37819 -13.03647 -12.90833 -12.87034 -12.71685 -12.43547 -12.33258 -12.09172 -11.97782 -11.90771 -11.78367 -11.62032 -11.45098 -11.26071 -10.88346 -10.47212 -9.66261 -9.51344 -9.39343 -8.36193 -6.42348 0.60340 0.67928 1.29152 1.37402 1.40987 1.86387 2.24846 2.28094 2.96006 3.10105 3.84503 4.02783 4.06281 4.11783 4.16460 4.20163 4.27118 4.32125 4.37646 4.38699 4.50994 4.59189 4.60532 4.64685 4.74020 4.79296 4.87114 4.90285 4.95188 5.06277 5.13678 5.18087 5.21088 5.23946 5.26651 5.30596 5.38564 5.42216 5.50864 5.66229 5.71807 5.83969 5.94318 6.18648 6.27341 6.52247 6.60711 7.20585 7.40950 8.78461 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.007591 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.392213 B = 3687.826310 C = 4852.895040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.099 3.901 4 N -0.608 5.608 5 C 0.112 3.888 6 C -0.131 4.131 7 C -0.142 4.142 8 C 0.532 3.468 9 O -0.587 6.587 10 C 0.031 3.969 11 H 0.073 0.927 12 C -0.494 4.494 13 H 0.031 0.969 14 C 0.043 3.957 15 N -0.929 5.929 16 Si 0.912 3.088 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.231 1.231 20 C -0.067 4.067 21 C -0.154 4.154 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.097 4.097 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.270 0.730 41 H 0.121 0.879 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.134 0.866 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -12.078 -6.370 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.024 4.024 4 N -0.339 5.339 5 C -0.010 4.010 6 C -0.170 4.170 7 C -0.199 4.199 8 C 0.322 3.678 9 O -0.467 6.467 10 C 0.009 3.991 11 H 0.091 0.909 12 C -0.531 4.531 13 H 0.049 0.951 14 C -0.157 4.157 15 N -0.567 5.567 16 Si 0.736 3.264 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.154 1.154 20 C -0.068 4.068 21 C -0.172 4.172 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.115 4.115 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.167 0.833 43 H 0.169 0.831 44 H 0.152 0.848 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.081 -11.964 -6.313 13.570 hybrid contribution -0.375 0.396 0.597 0.809 sum 0.707 -11.568 -5.715 12.922 Atomic orbital electron populations 1.21702 0.93960 1.02638 1.02235 1.21976 0.97193 0.96092 1.02163 1.21933 0.78191 0.97892 1.04384 1.47908 1.07635 1.72980 1.05366 1.21613 0.96344 0.97840 0.85184 1.21872 1.01048 0.95989 0.98054 1.21656 0.99733 1.02506 0.96051 1.20942 0.87435 0.73125 0.86252 1.90540 1.15819 1.52327 1.88056 1.18424 0.94318 0.98075 0.88235 0.90911 1.20311 1.11304 0.89648 1.31864 0.95068 1.25546 0.96617 0.97537 0.96007 1.69983 1.24060 1.22026 1.40616 0.86257 0.77765 0.81648 0.80697 1.19687 1.20721 1.15378 1.20233 0.95299 0.93863 0.97372 1.21261 1.01201 0.96698 0.98069 1.21374 0.95316 1.00718 0.97023 1.21362 0.98478 0.94757 1.00610 1.21382 0.99872 0.98333 0.95777 1.20849 0.95205 0.98588 0.96905 0.91008 0.91033 0.93924 0.90107 0.93661 0.90521 0.88990 0.88532 0.92788 0.94494 0.90493 0.91014 0.93371 0.91507 0.92040 0.86108 0.83261 0.83072 0.84803 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.66 16 2 C -0.14 -3.65 6.15 30.59 0.19 -3.47 16 3 C 0.10 3.25 5.06 86.38 0.44 3.68 16 4 N -0.61 -22.78 2.47 -821.80 -2.03 -24.81 16 5 C 0.11 3.46 5.43 86.38 0.47 3.93 16 6 C -0.13 -3.40 6.26 30.60 0.19 -3.21 16 7 C -0.14 -2.82 9.91 71.98 0.71 -2.10 16 8 C 0.53 24.47 6.82 87.66 0.60 25.07 16 9 O -0.59 -29.77 14.84 -3.03 -0.04 -29.82 16 10 C 0.03 1.46 1.05 -13.03 -0.01 1.45 16 11 H 0.07 3.27 3.88 -2.39 -0.01 3.27 16 12 C -0.49 -27.04 6.76 25.60 0.17 -26.87 16 13 H 0.03 1.97 8.05 -2.91 -0.02 1.94 16 14 C 0.04 2.38 5.47 84.66 0.46 2.84 16 15 N -0.93 -54.79 13.96 21.45 0.30 -54.49 16 16 Si 0.91 41.56 25.92 68.60 1.78 43.34 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.23 -9.30 6.14 99.48 0.61 -8.68 16 20 C -0.07 -3.09 3.71 -19.87 -0.07 -3.16 16 21 C -0.15 -6.14 8.54 22.27 0.19 -5.95 16 22 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 23 C -0.13 -4.37 10.05 22.27 0.22 -4.15 16 24 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 25 C -0.10 -4.53 8.06 22.27 0.18 -4.35 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.11 8.14 -2.38 -0.02 1.10 16 29 H 0.08 1.84 6.26 -2.39 -0.01 1.83 16 30 H 0.04 1.37 7.46 -2.39 -0.02 1.35 16 31 H 0.08 3.10 5.48 -2.39 -0.01 3.09 16 32 H 0.09 2.55 7.90 -2.39 -0.02 2.53 16 33 H 0.10 2.40 7.90 -2.39 -0.02 2.38 16 34 H 0.05 1.91 7.47 -2.38 -0.02 1.89 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.76 6.26 -2.39 -0.01 1.74 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.12 4.37 7.96 -2.91 -0.02 4.34 16 42 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 44 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.09 4.53 7.82 -2.91 -0.02 4.51 16 Total: -1.00 -68.88 356.71 5.75 -63.12 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.85 Total: 30.55 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.90 Total: -27.89 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -1.73 Total: -79.30 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.04 Total: -29.82 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.78 Total: 43.34 kcal Total: -68.88 5.75 -63.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532491217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.548 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds