Wall clock time and date at job start Tue Mar 31 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47094 * 2 1 4 4 H 1.08996 * 109.46935 * 55.00561 * 3 2 1 5 5 C 1.52993 * 109.47376 * 294.99884 * 3 2 1 6 6 C 1.53004 * 109.46823 * 174.99924 * 3 2 1 7 7 C 1.52989 * 109.47075 * 185.00216 * 6 3 2 8 8 N 1.46504 * 109.47427 * 180.02562 * 7 6 3 9 9 C 1.34775 * 120.00265 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99832 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99973 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.46942 * 60.00023 * 11 9 8 13 13 C 1.50698 * 109.46966 * 300.00021 * 11 9 8 14 14 H 1.08003 * 120.00149 * 324.87748 * 13 11 9 15 15 C 1.37879 * 119.99882 * 144.88240 * 13 11 9 16 16 N 1.31511 * 120.00162 * 5.19240 * 15 13 11 17 17 Si 1.86802 * 119.99713 * 185.18811 * 15 13 11 18 18 H 1.48508 * 109.46801 * 90.00101 * 17 15 13 19 19 H 1.48503 * 109.47220 * 209.99829 * 17 15 13 20 20 H 1.48493 * 109.47415 * 330.00106 * 17 15 13 21 21 C 1.50696 * 109.47037 * 179.97438 * 11 9 8 22 22 C 1.38237 * 120.00097 * 66.01050 * 21 11 9 23 23 C 1.38240 * 120.00135 * 179.80846 * 22 21 11 24 24 C 1.38228 * 119.99844 * 0.39829 * 23 22 21 25 25 C 1.38235 * 120.00148 * 359.85662 * 24 23 22 26 26 C 1.38233 * 120.00097 * 246.28300 * 21 11 9 27 27 H 1.09009 * 109.46992 * 59.99670 * 1 2 3 28 28 H 1.08998 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46728 * 300.00034 * 1 2 3 30 30 H 1.09006 * 109.46485 * 240.00412 * 2 1 3 31 31 H 1.08999 * 109.47004 * 120.00354 * 2 1 3 32 32 H 1.09003 * 109.46929 * 60.00400 * 5 3 2 33 33 H 1.09001 * 109.47339 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47487 * 300.00510 * 5 3 2 35 35 H 1.08995 * 109.47307 * 305.00327 * 6 3 2 36 36 H 1.09007 * 109.46620 * 65.00120 * 6 3 2 37 37 H 1.09005 * 109.47093 * 300.00212 * 7 6 3 38 38 H 1.09003 * 109.47679 * 59.99958 * 7 6 3 39 39 H 0.96993 * 119.99586 * 0.02562 * 8 7 6 40 40 H 0.96999 * 119.99871 * 180.02562 * 16 15 13 41 41 H 1.08006 * 120.00112 * 359.97438 * 22 21 11 42 42 H 1.08000 * 120.00005 * 180.22891 * 23 22 21 43 43 H 1.07997 * 120.00359 * 179.83557 * 24 23 22 44 44 H 1.08001 * 120.00129 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00260 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0646 2.8849 0.2512 8 7 5.5247 2.8867 0.3710 9 6 6.1893 4.0526 0.4944 10 8 5.5787 5.1004 0.5058 11 6 7.6913 4.0544 0.6170 12 1 8.1287 3.5945 -0.2691 13 6 8.0963 3.2732 1.8404 14 1 7.4808 3.3014 2.7274 15 6 9.2528 2.5226 1.8274 16 7 10.0548 2.5683 0.7861 17 14 9.6805 1.4407 3.2889 18 1 9.0963 0.0896 3.0923 19 1 11.1566 1.3293 3.4073 20 1 9.1285 2.0429 4.5290 21 6 8.1835 5.4734 0.7407 22 6 7.8621 6.2216 1.8578 23 6 8.3169 7.5219 1.9731 24 6 9.0861 8.0768 0.9676 25 6 9.4031 7.3304 -0.1519 26 6 8.9516 6.0287 -0.2655 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.5490 2.1254 -1.3968 33 1 1.9991 3.1541 -1.3075 34 1 2.0699 1.5876 -2.1492 35 1 3.8571 0.8800 1.0113 36 1 4.0030 0.9835 -0.7597 37 1 3.7724 3.4492 -0.6344 38 1 3.6265 3.3457 1.1366 39 1 6.0131 2.0487 0.3615 40 1 10.8681 2.0399 0.7768 41 1 7.2579 5.7893 2.6418 42 1 8.0689 8.1052 2.8476 43 1 9.4392 9.0935 1.0564 44 1 10.0038 7.7641 -0.9378 45 1 9.1994 5.4456 -1.1400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586928920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:26 Heat of formation + Delta-G solvation = -50.148231 kcal Electronic energy + Delta-G solvation = -22787.963140 eV Core-core repulsion = 19575.777162 eV Total energy + Delta-G solvation = -3212.185978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.13862 -37.91304 -37.13551 -33.99144 -33.61320 -31.12717 -30.78469 -29.89499 -28.19863 -27.07715 -25.09706 -23.76860 -21.91741 -21.54451 -20.67751 -20.06888 -19.05832 -16.74486 -16.11167 -15.86577 -15.48980 -15.39377 -14.65867 -14.48749 -14.31241 -13.86221 -13.82897 -13.48254 -13.21292 -12.70694 -12.60002 -12.39094 -12.25062 -12.02418 -11.82671 -11.62443 -11.59610 -11.51970 -11.07010 -11.03001 -10.94863 -10.71597 -10.56879 -10.46164 -10.38448 -10.23082 -9.96385 -9.39827 -8.76103 -8.57680 -8.25378 -7.90388 -7.56267 -6.26158 -4.32438 2.42001 2.44837 3.18740 3.27220 3.30196 3.76955 4.07084 4.29251 4.70689 4.78718 4.84350 4.92003 5.10746 5.17564 5.30384 5.40835 5.49415 5.55190 5.66997 5.75579 5.77399 5.82646 5.85254 5.90363 5.94027 5.95673 6.04843 6.13339 6.14079 6.25947 6.33908 6.41692 6.46945 6.54612 6.64570 6.89489 7.01679 7.19400 7.29804 7.40814 7.49034 7.64371 7.79138 7.99559 8.10966 8.44545 8.72095 9.28811 9.34718 10.82174 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004358 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.747583 B = 6423.715743 C = 7928.953166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.127 4.127 7 C 0.121 3.879 8 N -0.731 5.731 9 C 0.526 3.474 10 O -0.569 6.569 11 C 0.050 3.950 12 H 0.088 0.912 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.073 3.927 16 N -0.878 5.878 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.008 4.008 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.118 4.118 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.404 0.596 40 H 0.266 0.734 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -2.897 -2.646 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.209 4.209 6 C -0.165 4.165 7 C -0.004 4.004 8 N -0.384 5.384 9 C 0.315 3.685 10 O -0.449 6.449 11 C 0.029 3.971 12 H 0.106 0.894 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.513 5.513 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.009 4.009 22 C -0.104 4.104 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.136 4.136 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.239 0.761 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.351 -2.223 -2.719 11.882 hybrid contribution 0.679 -1.019 0.834 1.482 sum -10.673 -3.243 -1.885 11.313 Atomic orbital electron populations 1.21826 0.96092 1.01297 1.01871 1.21578 0.95694 0.96415 1.02033 1.21091 0.94894 0.96111 0.98660 0.91035 1.21957 1.00979 1.00967 0.97026 1.21853 0.95245 0.96731 1.02675 1.21235 0.81860 0.96045 1.01225 1.45937 1.06159 1.10089 1.76168 1.21630 0.91723 0.82283 0.72837 1.90574 1.70996 1.31948 1.51336 1.18119 0.86479 0.91062 1.01480 0.89434 1.20693 1.08551 1.27867 0.98032 0.91959 1.24972 0.95687 0.96254 0.96226 1.69921 1.12176 1.39736 1.29509 0.86491 0.77710 0.80595 0.82711 1.20358 1.21066 1.19661 1.20019 0.93725 0.94986 0.92147 1.20820 0.98589 0.93210 0.97733 1.20946 0.99831 0.95950 0.98571 1.20784 1.01538 0.99066 0.95391 1.20897 1.01238 0.95005 0.97896 1.20983 0.99178 0.94557 0.98932 0.92537 0.93063 0.92828 0.92013 0.91977 0.92718 0.92178 0.92731 0.91238 0.91369 0.92256 0.92543 0.76117 0.92379 0.87191 0.87638 0.87754 0.87596 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -1.07 5.40 -26.73 -0.14 -1.21 16 3 C -0.09 -0.90 2.39 -90.62 -0.22 -1.11 16 4 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.50 8.70 37.15 0.32 -1.17 16 6 C -0.13 -1.51 4.80 -26.73 -0.13 -1.64 16 7 C 0.12 1.86 5.43 -4.05 -0.02 1.84 16 8 N -0.73 -13.62 5.46 -60.29 -0.33 -13.95 16 9 C 0.53 11.89 7.04 -10.99 -0.08 11.81 16 10 O -0.57 -14.14 15.42 5.56 0.09 -14.06 16 11 C 0.05 1.20 2.37 -94.08 -0.22 0.97 16 12 H 0.09 2.22 7.13 -51.93 -0.37 1.85 16 13 C -0.51 -12.92 7.47 -34.44 -0.26 -13.18 16 14 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 15 C 0.07 1.86 5.45 -17.82 -0.10 1.77 16 16 N -0.88 -23.23 12.84 55.43 0.71 -22.52 16 17 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.01 -0.19 4.30 -104.63 -0.45 -0.64 16 22 C -0.09 -1.97 8.31 -39.58 -0.33 -2.30 16 23 C -0.13 -2.74 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.86 10.05 -39.59 -0.40 -3.25 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 27 H 0.06 0.43 6.57 -51.92 -0.34 0.09 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 33 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.40 7.14 8.36 -40.82 -0.34 6.80 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.11 2.57 7.90 -52.48 -0.41 2.16 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 2.40 7.96 -52.49 -0.42 1.98 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -28.75 366.89 -9.39 -38.14 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.53 Total: 10.13 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.84 Total: -18.17 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.38 Total: -36.46 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.75 -9.39 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.008 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds