Wall clock time and date at job start Tue Mar 31 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47094 * 2 1 4 4 H 1.08996 * 109.46935 * 55.00561 * 3 2 1 5 5 C 1.52993 * 109.47376 * 294.99884 * 3 2 1 6 6 C 1.53004 * 109.46823 * 174.99924 * 3 2 1 7 7 C 1.52989 * 109.47075 * 185.00216 * 6 3 2 8 8 N 1.46504 * 109.47427 * 180.02562 * 7 6 3 9 9 C 1.34775 * 120.00265 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99832 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99973 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.46942 * 60.00023 * 11 9 8 13 13 C 1.50698 * 109.46966 * 300.00021 * 11 9 8 14 14 H 1.08003 * 120.00149 * 324.87748 * 13 11 9 15 15 C 1.37879 * 119.99882 * 144.88240 * 13 11 9 16 16 N 1.31511 * 120.00162 * 5.19240 * 15 13 11 17 17 Si 1.86802 * 119.99713 * 185.18811 * 15 13 11 18 18 H 1.48508 * 109.46801 * 90.00101 * 17 15 13 19 19 H 1.48503 * 109.47220 * 209.99829 * 17 15 13 20 20 H 1.48493 * 109.47415 * 330.00106 * 17 15 13 21 21 C 1.50696 * 109.47037 * 179.97438 * 11 9 8 22 22 C 1.38237 * 120.00097 * 66.01050 * 21 11 9 23 23 C 1.38240 * 120.00135 * 179.80846 * 22 21 11 24 24 C 1.38228 * 119.99844 * 0.39829 * 23 22 21 25 25 C 1.38235 * 120.00148 * 359.85662 * 24 23 22 26 26 C 1.38233 * 120.00097 * 246.28300 * 21 11 9 27 27 H 1.09009 * 109.46992 * 59.99670 * 1 2 3 28 28 H 1.08998 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46728 * 300.00034 * 1 2 3 30 30 H 1.09006 * 109.46485 * 240.00412 * 2 1 3 31 31 H 1.08999 * 109.47004 * 120.00354 * 2 1 3 32 32 H 1.09003 * 109.46929 * 60.00400 * 5 3 2 33 33 H 1.09001 * 109.47339 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47487 * 300.00510 * 5 3 2 35 35 H 1.08995 * 109.47307 * 305.00327 * 6 3 2 36 36 H 1.09007 * 109.46620 * 65.00120 * 6 3 2 37 37 H 1.09005 * 109.47093 * 300.00212 * 7 6 3 38 38 H 1.09003 * 109.47679 * 59.99958 * 7 6 3 39 39 H 0.96993 * 119.99586 * 0.02562 * 8 7 6 40 40 H 0.96999 * 119.99871 * 180.02562 * 16 15 13 41 41 H 1.08006 * 120.00112 * 359.97438 * 22 21 11 42 42 H 1.08000 * 120.00005 * 180.22891 * 23 22 21 43 43 H 1.07997 * 120.00359 * 179.83557 * 24 23 22 44 44 H 1.08001 * 120.00129 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00260 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0646 2.8849 0.2512 8 7 5.5247 2.8867 0.3710 9 6 6.1893 4.0526 0.4944 10 8 5.5787 5.1004 0.5058 11 6 7.6913 4.0544 0.6170 12 1 8.1287 3.5945 -0.2691 13 6 8.0963 3.2732 1.8404 14 1 7.4808 3.3014 2.7274 15 6 9.2528 2.5226 1.8274 16 7 10.0548 2.5683 0.7861 17 14 9.6805 1.4407 3.2889 18 1 9.0963 0.0896 3.0923 19 1 11.1566 1.3293 3.4073 20 1 9.1285 2.0429 4.5290 21 6 8.1835 5.4734 0.7407 22 6 7.8621 6.2216 1.8578 23 6 8.3169 7.5219 1.9731 24 6 9.0861 8.0768 0.9676 25 6 9.4031 7.3304 -0.1519 26 6 8.9516 6.0287 -0.2655 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.5490 2.1254 -1.3968 33 1 1.9991 3.1541 -1.3075 34 1 2.0699 1.5876 -2.1492 35 1 3.8571 0.8800 1.0113 36 1 4.0030 0.9835 -0.7597 37 1 3.7724 3.4492 -0.6344 38 1 3.6265 3.3457 1.1366 39 1 6.0131 2.0487 0.3615 40 1 10.8681 2.0399 0.7768 41 1 7.2579 5.7893 2.6418 42 1 8.0689 8.1052 2.8476 43 1 9.4392 9.0935 1.0564 44 1 10.0038 7.7641 -0.9378 45 1 9.1994 5.4456 -1.1400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586928920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:26 Heat of formation + Delta-G solvation = -64.541676 kcal Electronic energy + Delta-G solvation = -22788.587286 eV Core-core repulsion = 19575.777162 eV Total energy + Delta-G solvation = -3212.810125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85561 -39.42494 -38.24111 -35.53295 -35.37623 -32.90859 -31.84805 -31.53633 -29.49442 -28.48933 -26.29342 -25.42790 -23.23686 -23.00504 -22.23317 -21.20087 -20.50428 -18.66009 -17.73395 -17.57223 -16.87780 -16.55186 -16.25099 -15.86546 -15.77227 -15.37245 -15.09753 -14.60762 -14.56800 -14.18452 -14.04443 -13.89706 -13.62036 -13.35073 -13.29596 -12.83280 -12.81051 -12.76408 -12.70565 -12.52038 -12.20233 -11.96793 -11.95208 -11.70140 -11.53688 -11.38079 -11.32235 -11.27352 -10.68330 -10.41773 -9.85646 -9.55961 -9.25562 -8.21044 -6.33152 0.75539 0.80648 1.42509 1.44944 1.53942 1.95881 2.42920 2.56804 3.08054 3.27208 3.79838 3.93893 4.02670 4.21816 4.28354 4.29976 4.36764 4.42057 4.49916 4.53874 4.59536 4.64703 4.71724 4.76631 4.87049 4.89943 4.97414 5.05672 5.09061 5.11627 5.18037 5.21850 5.25251 5.30741 5.37320 5.44779 5.55188 5.56880 5.64632 5.72258 5.78251 5.83388 5.95298 6.23853 6.40759 6.71143 6.81145 7.34171 7.56001 8.87088 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004358 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.747583 B = 6423.715743 C = 7928.953166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.085 4.085 4 H 0.069 0.931 5 C -0.151 4.151 6 C -0.117 4.117 7 C 0.121 3.879 8 N -0.720 5.720 9 C 0.523 3.477 10 O -0.596 6.596 11 C 0.052 3.948 12 H 0.066 0.934 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.037 4.037 22 C -0.112 4.112 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.143 4.143 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.409 0.591 40 H 0.267 0.733 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 -2.788 -2.364 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.208 4.208 6 C -0.155 4.155 7 C -0.002 4.002 8 N -0.371 5.371 9 C 0.312 3.688 10 O -0.478 6.478 11 C 0.030 3.970 12 H 0.084 0.916 13 C -0.555 4.555 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.542 5.542 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.038 4.038 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.244 0.756 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.665 -2.149 -2.443 12.111 hybrid contribution 0.750 -0.976 0.716 1.424 sum -10.916 -3.126 -1.727 11.485 Atomic orbital electron populations 1.21817 0.95183 1.01951 1.02030 1.21549 0.96468 0.95180 1.02258 1.21070 0.93324 0.97257 0.98762 0.91305 1.21947 1.01896 1.00036 0.96939 1.21806 0.96600 0.93963 1.03134 1.21402 0.79641 0.98622 1.00569 1.45902 1.07643 1.09101 1.74469 1.21445 0.91415 0.82945 0.73008 1.90539 1.71276 1.33040 1.52933 1.18016 0.87376 0.91483 1.00086 0.91594 1.20735 1.08572 1.28180 0.97970 0.93019 1.25606 0.95463 0.97264 0.98428 1.70022 1.12536 1.40570 1.31062 0.85589 0.77183 0.79519 0.79607 1.18911 1.21182 1.19961 1.20133 0.95084 0.95217 0.93382 1.20849 0.99894 0.94885 0.97439 1.21327 0.99077 0.94902 1.00024 1.21272 0.99999 1.00755 0.94131 1.21313 1.00498 0.93821 0.99086 1.21143 1.00034 0.96178 0.98770 0.92199 0.92195 0.92873 0.91637 0.91937 0.91363 0.93613 0.92383 0.90931 0.90680 0.92566 0.93515 0.75556 0.92344 0.88852 0.84647 0.83451 0.84173 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.43 16 2 C -0.12 -1.89 5.40 30.60 0.17 -1.72 16 3 C -0.09 -1.63 2.39 -10.79 -0.03 -1.66 16 4 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 5 C -0.15 -2.82 8.70 71.98 0.63 -2.19 16 6 C -0.12 -2.70 4.80 30.59 0.15 -2.55 16 7 C 0.12 3.79 5.43 86.37 0.47 4.26 16 8 N -0.72 -27.54 5.46 -463.06 -2.53 -30.07 16 9 C 0.52 24.57 7.04 87.66 0.62 25.19 16 10 O -0.60 -30.69 15.42 -3.03 -0.05 -30.74 16 11 C 0.05 2.59 2.37 -13.03 -0.03 2.56 16 12 H 0.07 3.53 7.13 -2.39 -0.02 3.51 16 13 C -0.52 -26.77 7.47 25.60 0.19 -26.57 16 14 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 15 C 0.03 1.77 5.45 84.66 0.46 2.23 16 16 N -0.91 -48.82 12.84 21.45 0.28 -48.54 16 17 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C -0.04 -1.84 4.30 -19.87 -0.09 -1.92 16 22 C -0.11 -5.28 8.31 22.27 0.18 -5.10 16 23 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 24 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 25 C -0.13 -4.89 10.05 22.27 0.22 -4.66 16 26 C -0.14 -6.49 9.67 22.27 0.22 -6.27 16 27 H 0.06 0.79 6.57 -2.38 -0.02 0.78 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.08 6.57 -2.39 -0.02 1.07 16 33 H 0.04 0.98 6.56 -2.39 -0.02 0.96 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.06 1.82 6.56 -2.38 -0.02 1.80 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.41 14.76 8.36 -92.71 -0.77 13.99 16 40 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.09 4.56 7.90 -2.91 -0.02 4.53 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 44 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 45 H 0.11 4.77 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -62.85 366.89 4.21 -58.63 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.18 Total: 37.45 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.30 Total: -29.76 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.25 Total: -78.61 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -62.85 4.21 -58.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.907 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds