Wall clock time and date at job start Tue Mar 31 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 H 1.09001 * 109.47074 * 305.00194 * 3 2 1 5 5 C 1.52999 * 109.47174 * 64.99949 * 3 2 1 6 6 C 1.53002 * 109.47364 * 185.00384 * 3 2 1 7 7 C 1.52991 * 109.46986 * 174.99897 * 6 3 2 8 8 N 1.46503 * 109.46962 * 179.97438 * 7 6 3 9 9 C 1.34779 * 120.00328 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99419 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00080 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47295 * 299.99387 * 11 9 8 13 13 C 1.50696 * 109.47530 * 59.99483 * 11 9 8 14 14 H 1.07997 * 120.00260 * 235.33651 * 13 11 9 15 15 C 1.37879 * 119.99977 * 55.33425 * 13 11 9 16 16 N 1.31516 * 119.99735 * 1.97120 * 15 13 11 17 17 Si 1.86800 * 120.00111 * 181.96775 * 15 13 11 18 18 H 1.48500 * 109.47037 * 60.00267 * 17 15 13 19 19 H 1.48499 * 109.46987 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47204 * 299.99860 * 17 15 13 21 21 C 1.50707 * 109.46942 * 179.97438 * 11 9 8 22 22 C 1.38230 * 120.00383 * 47.22241 * 21 11 9 23 23 C 1.38230 * 120.00043 * 180.02562 * 22 21 11 24 24 C 1.38229 * 120.00376 * 359.95097 * 23 22 21 25 25 C 1.38236 * 119.99772 * 359.97438 * 24 23 22 26 26 C 1.38235 * 120.00185 * 0.06932 * 25 24 23 27 27 H 1.09002 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47073 * 299.99199 * 1 2 3 29 29 H 1.08995 * 109.47486 * 60.00430 * 1 2 3 30 30 H 1.09009 * 109.47080 * 240.00526 * 2 1 3 31 31 H 1.08995 * 109.47745 * 120.00309 * 2 1 3 32 32 H 1.09001 * 109.46920 * 60.00150 * 5 3 2 33 33 H 1.08999 * 109.47411 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47266 * 300.00258 * 5 3 2 35 35 H 1.09003 * 109.46980 * 54.99408 * 6 3 2 36 36 H 1.09001 * 109.46550 * 295.00131 * 6 3 2 37 37 H 1.09006 * 109.47405 * 60.00385 * 7 6 3 38 38 H 1.09001 * 109.47667 * 299.99550 * 7 6 3 39 39 H 0.97004 * 120.00070 * 0.02562 * 8 7 6 40 40 H 0.97003 * 120.00319 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99547 * 359.97438 * 22 21 11 42 42 H 1.08001 * 119.99875 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00421 * 179.72884 * 24 23 22 44 44 H 1.07996 * 120.00326 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00212 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4445 -0.1258 7 6 4.0642 2.8851 -0.2512 8 7 5.5244 2.8870 -0.3711 9 6 6.1890 4.0531 -0.4934 10 8 5.5782 5.1009 -0.5048 11 6 7.6909 4.0550 -0.6173 12 1 8.1290 3.5939 0.2679 13 6 8.0950 3.2754 -1.8420 14 1 8.7871 2.4511 -1.7534 15 6 7.5809 3.6143 -3.0756 16 7 6.7683 4.6421 -3.1895 17 14 8.0388 2.6138 -4.5852 18 1 7.6114 1.2047 -4.3934 19 1 7.3588 3.1788 -5.7784 20 1 9.5096 2.6624 -4.7838 21 6 8.1830 5.4741 -0.7407 22 6 7.7152 6.4456 0.1242 23 6 8.1662 7.7473 0.0106 24 6 9.0857 8.0774 -0.9673 25 6 9.5547 7.1055 -1.8312 26 6 9.1031 5.8040 -1.7183 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0698 1.5876 2.1491 33 1 1.9988 3.1541 1.3076 34 1 0.5488 2.1252 1.3969 35 1 3.8570 0.8801 -1.0114 36 1 4.0029 0.9837 0.7595 37 1 3.7721 3.4495 0.6344 38 1 3.6261 3.3459 -1.1366 39 1 6.0128 2.0490 -0.3624 40 1 6.4069 4.8809 -4.0575 41 1 6.9967 6.1877 0.8882 42 1 7.8003 8.5064 0.6861 43 1 9.4348 9.0953 -1.0588 44 1 10.2729 7.3634 -2.5955 45 1 9.4692 5.0448 -2.3936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586928921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:28 Heat of formation + Delta-G solvation = -41.074646 kcal Electronic energy + Delta-G solvation = -23281.135829 eV Core-core repulsion = 20069.343311 eV Total energy + Delta-G solvation = -3211.792518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.93244 -37.73101 -36.90564 -33.75544 -33.53602 -30.85173 -30.63445 -29.63004 -28.06474 -26.96545 -24.98462 -23.74892 -21.77020 -21.20030 -20.40026 -19.95948 -18.97610 -16.73919 -15.89455 -15.43251 -15.30925 -15.03127 -14.80957 -14.42615 -14.12595 -13.65124 -13.57869 -13.49839 -12.95619 -12.69104 -12.38258 -12.13901 -12.08390 -12.00747 -11.84768 -11.59566 -11.44331 -11.26162 -10.94355 -10.89380 -10.75577 -10.61227 -10.46587 -10.40436 -10.32753 -10.01304 -9.62093 -9.33842 -8.67547 -8.24063 -7.88592 -7.64542 -7.35096 -6.10092 -4.26612 2.59197 2.65718 3.21804 3.29574 3.30248 4.18099 4.28777 4.45112 4.81362 4.86899 4.96838 5.09165 5.17772 5.25238 5.41180 5.48596 5.59897 5.66800 5.76644 5.86690 5.89287 5.92377 6.00276 6.02066 6.02727 6.09677 6.14965 6.24915 6.31712 6.42762 6.50336 6.55639 6.67435 6.72375 6.86391 6.96200 7.17980 7.26082 7.58228 7.63907 7.69395 7.71912 7.84387 8.21058 8.31931 8.66793 8.87658 9.39710 9.77941 10.90234 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.004570 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.352647 B = 6125.577917 C = 7428.533113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.125 4.125 7 C 0.127 3.873 8 N -0.738 5.738 9 C 0.549 3.451 10 O -0.549 6.549 11 C 0.056 3.944 12 H 0.056 0.944 13 C -0.541 4.541 14 H 0.066 0.934 15 C 0.075 3.925 16 N -0.841 5.841 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.013 4.013 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.065 4.065 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.395 0.605 40 H 0.265 0.735 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -5.988 6.310 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.089 0.911 5 C -0.208 4.208 6 C -0.163 4.163 7 C 0.003 3.997 8 N -0.390 5.390 9 C 0.338 3.662 10 O -0.426 6.426 11 C 0.034 3.966 12 H 0.074 0.926 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.474 5.474 17 Si 0.714 3.286 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.014 4.014 22 C -0.118 4.118 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.166 4.166 26 C -0.083 4.083 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.225 -5.075 6.157 10.119 hybrid contribution 0.193 -0.808 -1.246 1.498 sum -6.032 -5.883 4.910 9.752 Atomic orbital electron populations 1.21822 0.96150 1.01217 1.01889 1.21573 0.95651 0.96529 1.01903 1.21095 0.95126 0.95955 0.98646 0.91060 1.21944 1.00861 1.01022 0.96967 1.21834 0.95058 0.97158 1.02243 1.21102 0.82410 0.95350 1.00871 1.45810 1.05736 1.09752 1.77751 1.20978 0.91045 0.82113 0.72027 1.90529 1.70431 1.31847 1.49805 1.17886 0.88955 0.91772 0.97960 0.92635 1.20650 1.29764 1.16940 0.90510 0.91625 1.25049 0.94727 0.94607 0.98939 1.70070 1.28581 1.24046 1.24678 0.86742 0.78871 0.80501 0.82532 1.20133 1.21318 1.19968 1.19831 0.93343 0.95522 0.92744 1.20969 0.98093 0.92960 0.99808 1.20815 0.99488 0.96351 0.99649 1.20764 0.99964 0.97996 0.97644 1.20985 1.01710 0.94284 0.99667 1.21151 0.95663 0.95070 0.96443 0.93125 0.92550 0.92818 0.92048 0.92103 0.92847 0.92135 0.92818 0.91480 0.91696 0.92796 0.92756 0.77241 0.92498 0.87531 0.88141 0.88247 0.88086 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.12 -1.17 5.40 -26.73 -0.14 -1.31 16 3 C -0.09 -1.02 2.39 -90.62 -0.22 -1.23 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -1.63 8.70 37.16 0.32 -1.30 16 6 C -0.13 -1.64 4.80 -26.73 -0.13 -1.77 16 7 C 0.13 2.21 5.43 -4.04 -0.02 2.18 16 8 N -0.74 -14.71 5.46 -60.30 -0.33 -15.04 16 9 C 0.55 13.15 5.45 -10.99 -0.06 13.09 16 10 O -0.55 -14.87 13.95 5.55 0.08 -14.79 16 11 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.54 -13.25 7.12 -34.44 -0.25 -13.49 16 14 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.90 3.99 -17.82 -0.07 1.83 16 16 N -0.84 -23.19 10.89 55.43 0.60 -22.58 16 17 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.01 -0.33 4.52 -104.62 -0.47 -0.80 16 22 C -0.10 -2.31 8.21 -39.59 -0.33 -2.64 16 23 C -0.14 -3.03 10.05 -39.59 -0.40 -3.43 16 24 C -0.15 -2.94 10.05 -39.59 -0.40 -3.34 16 25 C -0.15 -3.16 10.05 -39.58 -0.40 -3.56 16 26 C -0.07 -1.55 8.20 -39.58 -0.32 -1.88 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 34 H 0.05 0.52 6.57 -51.93 -0.34 0.17 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.94 6.56 -51.93 -0.34 0.60 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.39 7.13 8.36 -40.82 -0.34 6.79 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.11 2.44 7.01 -52.49 -0.37 2.07 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.13 3.12 6.02 -52.49 -0.32 2.80 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -29.49 357.32 -9.50 -38.98 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.43 Total: 10.73 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.78 Total: -17.58 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.27 Total: -37.62 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.49 -9.50 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.091 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds