Wall clock time and date at job start Tue Mar 31 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 H 1.09001 * 109.47074 * 305.00194 * 3 2 1 5 5 C 1.52999 * 109.47174 * 64.99949 * 3 2 1 6 6 C 1.53002 * 109.47364 * 185.00384 * 3 2 1 7 7 C 1.52991 * 109.46986 * 174.99897 * 6 3 2 8 8 N 1.46503 * 109.46962 * 179.97438 * 7 6 3 9 9 C 1.34779 * 120.00328 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99419 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00080 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47295 * 299.99387 * 11 9 8 13 13 C 1.50696 * 109.47530 * 59.99483 * 11 9 8 14 14 H 1.07997 * 120.00260 * 235.33651 * 13 11 9 15 15 C 1.37879 * 119.99977 * 55.33425 * 13 11 9 16 16 N 1.31516 * 119.99735 * 1.97120 * 15 13 11 17 17 Si 1.86800 * 120.00111 * 181.96775 * 15 13 11 18 18 H 1.48500 * 109.47037 * 60.00267 * 17 15 13 19 19 H 1.48499 * 109.46987 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47204 * 299.99860 * 17 15 13 21 21 C 1.50707 * 109.46942 * 179.97438 * 11 9 8 22 22 C 1.38230 * 120.00383 * 47.22241 * 21 11 9 23 23 C 1.38230 * 120.00043 * 180.02562 * 22 21 11 24 24 C 1.38229 * 120.00376 * 359.95097 * 23 22 21 25 25 C 1.38236 * 119.99772 * 359.97438 * 24 23 22 26 26 C 1.38235 * 120.00185 * 0.06932 * 25 24 23 27 27 H 1.09002 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47073 * 299.99199 * 1 2 3 29 29 H 1.08995 * 109.47486 * 60.00430 * 1 2 3 30 30 H 1.09009 * 109.47080 * 240.00526 * 2 1 3 31 31 H 1.08995 * 109.47745 * 120.00309 * 2 1 3 32 32 H 1.09001 * 109.46920 * 60.00150 * 5 3 2 33 33 H 1.08999 * 109.47411 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47266 * 300.00258 * 5 3 2 35 35 H 1.09003 * 109.46980 * 54.99408 * 6 3 2 36 36 H 1.09001 * 109.46550 * 295.00131 * 6 3 2 37 37 H 1.09006 * 109.47405 * 60.00385 * 7 6 3 38 38 H 1.09001 * 109.47667 * 299.99550 * 7 6 3 39 39 H 0.97004 * 120.00070 * 0.02562 * 8 7 6 40 40 H 0.97003 * 120.00319 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99547 * 359.97438 * 22 21 11 42 42 H 1.08001 * 119.99875 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.00421 * 179.72884 * 24 23 22 44 44 H 1.07996 * 120.00326 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00212 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4445 -0.1258 7 6 4.0642 2.8851 -0.2512 8 7 5.5244 2.8870 -0.3711 9 6 6.1890 4.0531 -0.4934 10 8 5.5782 5.1009 -0.5048 11 6 7.6909 4.0550 -0.6173 12 1 8.1290 3.5939 0.2679 13 6 8.0950 3.2754 -1.8420 14 1 8.7871 2.4511 -1.7534 15 6 7.5809 3.6143 -3.0756 16 7 6.7683 4.6421 -3.1895 17 14 8.0388 2.6138 -4.5852 18 1 7.6114 1.2047 -4.3934 19 1 7.3588 3.1788 -5.7784 20 1 9.5096 2.6624 -4.7838 21 6 8.1830 5.4741 -0.7407 22 6 7.7152 6.4456 0.1242 23 6 8.1662 7.7473 0.0106 24 6 9.0857 8.0774 -0.9673 25 6 9.5547 7.1055 -1.8312 26 6 9.1031 5.8040 -1.7183 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0698 1.5876 2.1491 33 1 1.9988 3.1541 1.3076 34 1 0.5488 2.1252 1.3969 35 1 3.8570 0.8801 -1.0114 36 1 4.0029 0.9837 0.7595 37 1 3.7721 3.4495 0.6344 38 1 3.6261 3.3459 -1.1366 39 1 6.0128 2.0490 -0.3624 40 1 6.4069 4.8809 -4.0575 41 1 6.9967 6.1877 0.8882 42 1 7.8003 8.5064 0.6861 43 1 9.4348 9.0953 -1.0588 44 1 10.2729 7.3634 -2.5955 45 1 9.4692 5.0448 -2.3936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586928921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:28 Heat of formation + Delta-G solvation = -56.387074 kcal Electronic energy + Delta-G solvation = -23281.799825 eV Core-core repulsion = 20069.343311 eV Total energy + Delta-G solvation = -3212.456515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70634 -39.24503 -38.16117 -35.46796 -35.22579 -32.65437 -31.79159 -31.34348 -29.42229 -28.43036 -26.25300 -25.41765 -23.05121 -22.83148 -22.06112 -21.17085 -20.51914 -18.60113 -17.53103 -17.06176 -16.67800 -16.66903 -16.40733 -15.68605 -15.65097 -15.30264 -14.92014 -14.72948 -14.31871 -14.12369 -13.94296 -13.86558 -13.62030 -13.40165 -13.01670 -12.80467 -12.71332 -12.67929 -12.56265 -12.50594 -12.26564 -11.92893 -11.77692 -11.57641 -11.41799 -11.38069 -11.30627 -11.15028 -10.62425 -10.13195 -9.60676 -9.37208 -9.08977 -8.05887 -6.26164 0.88578 0.93915 1.42985 1.45423 1.51204 2.34224 2.47153 2.82081 3.21230 3.36427 3.83368 3.94741 4.04314 4.31193 4.34489 4.36286 4.41260 4.50965 4.56640 4.61917 4.67650 4.71619 4.75254 4.80771 4.90512 5.00740 5.03000 5.11535 5.13998 5.17359 5.18448 5.23615 5.24060 5.32215 5.46593 5.54852 5.55579 5.57030 5.70971 5.89339 5.93579 5.98789 6.03126 6.43796 6.53870 6.77226 7.13068 7.42854 7.96328 8.92820 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.004570 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.352647 B = 6125.577917 C = 7428.533113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.059 0.941 5 C -0.149 4.149 6 C -0.113 4.113 7 C 0.131 3.869 8 N -0.729 5.729 9 C 0.546 3.454 10 O -0.587 6.587 11 C 0.045 3.955 12 H 0.068 0.932 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.040 3.960 16 N -0.875 5.875 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.036 4.036 22 C -0.119 4.119 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.088 4.088 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.023 0.977 39 H 0.404 0.596 40 H 0.255 0.745 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.127 0.873 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -6.711 6.760 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.106 4.106 4 H 0.077 0.923 5 C -0.206 4.206 6 C -0.151 4.151 7 C 0.007 3.993 8 N -0.381 5.381 9 C 0.335 3.665 10 O -0.467 6.467 11 C 0.024 3.976 12 H 0.086 0.914 13 C -0.572 4.572 14 H 0.091 0.909 15 C -0.165 4.165 16 N -0.509 5.509 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.225 1.225 20 H -0.192 1.192 21 C -0.037 4.037 22 C -0.137 4.137 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.170 4.170 26 C -0.106 4.106 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.239 0.761 40 H 0.064 0.936 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.145 0.855 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.984 -5.855 6.623 10.675 hybrid contribution 0.148 -0.550 -1.330 1.446 sum -5.836 -6.405 5.293 10.154 Atomic orbital electron populations 1.21816 0.95252 1.02006 1.01925 1.21536 0.96417 0.94974 1.02336 1.21079 0.93616 0.97339 0.98594 0.92297 1.21922 1.01820 0.99936 0.96884 1.21765 0.96403 0.93930 1.02952 1.21173 0.80689 0.98170 0.99292 1.45755 1.06917 1.09140 1.76287 1.21047 0.91263 0.82511 0.71660 1.90494 1.71086 1.33357 1.51766 1.18017 0.89112 0.92180 0.98271 0.91392 1.20868 1.29016 1.16584 0.90764 0.90930 1.25590 0.94563 0.95135 1.01188 1.70249 1.30388 1.25993 1.24300 0.85879 0.78698 0.79511 0.79270 1.19137 1.22513 1.19230 1.19956 0.94127 0.95971 0.93639 1.21036 0.98581 0.94098 0.99979 1.21195 0.99110 0.96019 1.00174 1.21180 0.98876 0.99549 0.96362 1.21317 1.01815 0.93528 1.00340 1.21136 0.96669 0.96109 0.96650 0.91975 0.92072 0.93271 0.92174 0.91108 0.91849 0.93917 0.91459 0.91611 0.89952 0.92920 0.95829 0.76103 0.93627 0.88358 0.85250 0.84370 0.85547 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.67 71.98 0.70 -1.68 16 2 C -0.12 -2.03 5.40 30.59 0.17 -1.87 16 3 C -0.09 -1.90 2.39 -10.79 -0.03 -1.93 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.15 -3.04 8.70 71.98 0.63 -2.41 16 6 C -0.11 -2.87 4.80 30.59 0.15 -2.72 16 7 C 0.13 4.63 5.43 86.38 0.47 5.10 16 8 N -0.73 -29.41 5.46 -463.06 -2.53 -31.94 16 9 C 0.55 26.73 5.45 87.66 0.48 27.21 16 10 O -0.59 -32.85 13.95 -3.04 -0.04 -32.89 16 11 C 0.05 2.19 2.78 -13.03 -0.04 2.15 16 12 H 0.07 2.99 8.14 -2.39 -0.02 2.98 16 13 C -0.53 -26.24 7.12 25.60 0.18 -26.06 16 14 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 15 C 0.04 2.02 3.99 84.65 0.34 2.36 16 16 N -0.88 -49.32 10.89 21.45 0.23 -49.08 16 17 Si 0.94 40.92 29.54 68.60 2.03 42.94 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 21 C -0.04 -1.77 4.52 -19.86 -0.09 -1.86 16 22 C -0.12 -5.53 8.21 22.27 0.18 -5.35 16 23 C -0.15 -5.95 10.05 22.27 0.22 -5.72 16 24 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 25 C -0.15 -6.27 10.05 22.27 0.22 -6.05 16 26 C -0.09 -4.18 8.20 22.27 0.18 -4.00 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.89 6.56 -2.39 -0.02 0.87 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.02 6.56 -2.39 -0.02 1.00 16 34 H 0.07 1.19 6.57 -2.39 -0.02 1.17 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.88 6.56 -2.38 -0.02 1.87 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.40 14.49 8.36 -92.70 -0.77 13.71 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.10 4.63 7.01 -2.91 -0.02 4.61 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 45 H 0.11 5.56 6.02 -2.91 -0.02 5.55 16 Total: -1.00 -64.16 357.32 3.87 -60.29 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.19 Total: 38.68 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.99 Total: -27.99 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.29 Total: -81.02 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.04 Total: -32.89 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -64.16 3.87 -60.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.904 kcal (2) G-P(sol) polarization free energy of solvation -64.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds