Wall clock time and date at job start Tue Mar 31 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 H 1.08997 * 109.46787 * 305.00082 * 3 2 1 5 5 C 1.52995 * 109.46801 * 65.00278 * 3 2 1 6 6 C 1.52997 * 109.47105 * 185.00271 * 3 2 1 7 7 C 1.53002 * 109.47043 * 175.00185 * 6 3 2 8 8 N 1.46502 * 109.46927 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99701 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00331 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99681 * 179.97438 * 9 8 7 12 12 H 1.09001 * 109.47188 * 60.00980 * 11 9 8 13 13 C 1.50699 * 109.47544 * 300.00287 * 11 9 8 14 14 H 1.07996 * 120.00008 * 324.88499 * 13 11 9 15 15 C 1.37876 * 119.99868 * 144.88060 * 13 11 9 16 16 N 1.31516 * 120.00046 * 5.19570 * 15 13 11 17 17 Si 1.86800 * 119.99939 * 185.19436 * 15 13 11 18 18 H 1.48495 * 109.47126 * 59.99941 * 17 15 13 19 19 H 1.48504 * 109.47168 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47211 * 299.99836 * 17 15 13 21 21 C 1.50704 * 109.47002 * 180.02562 * 11 9 8 22 22 C 1.38230 * 120.00016 * 66.01658 * 21 11 9 23 23 C 1.38236 * 119.99959 * 179.81394 * 22 21 11 24 24 C 1.38237 * 120.00190 * 0.39368 * 23 22 21 25 25 C 1.38236 * 119.99833 * 359.85756 * 24 23 22 26 26 C 1.38238 * 120.00006 * 359.96026 * 25 24 23 27 27 H 1.08998 * 109.46836 * 59.99515 * 1 2 3 28 28 H 1.08994 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46921 * 300.00432 * 1 2 3 30 30 H 1.09006 * 109.46656 * 240.00095 * 2 1 3 31 31 H 1.08998 * 109.46836 * 120.00485 * 2 1 3 32 32 H 1.09007 * 109.47242 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47314 * 299.99733 * 5 3 2 34 34 H 1.08994 * 109.47862 * 59.99847 * 5 3 2 35 35 H 1.09001 * 109.47609 * 54.99939 * 6 3 2 36 36 H 1.09004 * 109.47215 * 294.99849 * 6 3 2 37 37 H 1.08998 * 109.46933 * 60.00189 * 7 6 3 38 38 H 1.08996 * 109.47445 * 299.99747 * 7 6 3 39 39 H 0.96996 * 120.00554 * 359.97438 * 8 7 6 40 40 H 0.97005 * 120.00023 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99842 * 359.97438 * 22 21 11 42 42 H 1.08005 * 119.99900 * 180.22970 * 23 22 21 43 43 H 1.08001 * 120.00148 * 179.83920 * 24 23 22 44 44 H 1.07990 * 120.00067 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00306 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5649 1.4442 -0.1258 7 6 4.0646 2.8849 -0.2511 8 7 5.5247 2.8865 -0.3710 9 6 6.1894 4.0526 -0.4943 10 8 5.5788 5.1004 -0.5056 11 6 7.6914 4.0543 -0.6170 12 1 7.9843 3.4895 -1.5020 13 6 8.2963 3.4182 0.6080 14 1 7.8319 3.5561 1.5732 15 6 9.4425 2.6601 0.4964 16 7 10.0651 2.5757 -0.6590 17 14 10.1111 1.7530 1.9862 18 1 9.0919 0.7919 2.4790 19 1 11.3426 1.0157 1.6053 20 1 10.4299 2.7296 3.0585 21 6 8.1836 5.4733 -0.7406 22 6 8.0400 6.3495 0.3189 23 6 8.4950 7.6500 0.2069 24 6 9.0863 8.0767 -0.9675 25 6 9.2252 7.2020 -2.0289 26 6 8.7736 5.9004 -1.9156 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.9984 3.1543 1.3072 33 1 0.5491 2.1252 1.3970 34 1 2.0699 1.5874 2.1492 35 1 3.8571 0.8799 -1.0114 36 1 4.0031 0.9834 0.7596 37 1 3.7725 3.4491 0.6345 38 1 3.6266 3.3457 -1.1364 39 1 6.0132 2.0486 -0.3616 40 1 10.8714 2.0421 -0.7376 41 1 7.5746 6.0172 1.2351 42 1 8.3861 8.3335 1.0360 43 1 9.4394 9.0935 -1.0559 44 1 9.6867 7.5354 -2.9465 45 1 8.8825 5.2168 -2.7446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586928922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:30 Heat of formation + Delta-G solvation = -50.071893 kcal Electronic energy + Delta-G solvation = -22801.005777 eV Core-core repulsion = 19588.823109 eV Total energy + Delta-G solvation = -3212.182668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.13721 -37.91106 -37.13324 -33.99039 -33.61156 -31.12521 -30.78293 -29.89474 -28.19362 -27.07175 -25.09659 -23.76558 -21.91708 -21.54376 -20.67652 -20.06541 -19.05549 -16.75591 -16.10531 -15.81163 -15.48535 -15.44433 -14.70375 -14.49268 -14.16894 -14.00359 -13.75002 -13.53438 -13.14828 -12.76988 -12.56581 -12.38920 -12.23341 -12.01444 -11.82482 -11.62687 -11.60380 -11.50782 -11.07027 -11.00191 -10.97256 -10.70999 -10.56707 -10.45786 -10.38854 -10.23277 -9.96288 -9.41074 -8.75737 -8.57202 -8.25209 -7.90333 -7.56152 -6.25847 -4.32230 2.42075 2.44950 3.20963 3.26686 3.28497 3.76987 4.07284 4.29366 4.70919 4.78945 4.84406 4.92085 5.10938 5.17748 5.30499 5.41596 5.49838 5.56154 5.66859 5.75642 5.77947 5.82743 5.85715 5.90650 5.94219 5.95846 6.05503 6.13724 6.13816 6.26002 6.34232 6.42544 6.47163 6.54693 6.64647 6.89562 7.01729 7.19452 7.29951 7.40868 7.49082 7.64232 7.79268 7.99662 8.11064 8.44673 8.71907 9.28923 9.34792 10.82404 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.004343 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.065436 B = 6445.801662 C = 7845.636935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.127 4.127 7 C 0.121 3.879 8 N -0.731 5.731 9 C 0.526 3.474 10 O -0.569 6.569 11 C 0.050 3.950 12 H 0.088 0.912 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.878 5.878 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.008 4.008 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.118 4.118 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.404 0.596 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 -3.056 0.100 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.089 0.911 5 C -0.210 4.210 6 C -0.165 4.165 7 C -0.004 4.004 8 N -0.383 5.383 9 C 0.315 3.685 10 O -0.449 6.449 11 C 0.029 3.971 12 H 0.106 0.894 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.514 5.514 17 Si 0.725 3.275 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.009 4.009 22 C -0.104 4.104 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.137 4.137 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.239 0.761 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.557 -2.398 -0.008 11.803 hybrid contribution 0.810 -0.911 0.822 1.470 sum -10.746 -3.309 0.814 11.274 Atomic orbital electron populations 1.21822 0.96092 1.01294 1.01874 1.21577 0.95693 0.96422 1.02030 1.21085 0.94878 0.96096 0.98659 0.91078 1.21958 1.00949 1.01008 0.97047 1.21856 0.95263 0.96709 1.02687 1.21235 0.81826 0.96068 1.01237 1.45938 1.06120 1.10108 1.76184 1.21632 0.91503 0.82322 0.73022 1.90574 1.70915 1.31893 1.51476 1.18116 0.86217 0.91314 1.01459 0.89431 1.20647 1.10696 1.31295 0.92565 0.92022 1.24969 0.96126 0.95832 0.96182 1.69914 1.18198 1.39159 1.24082 0.86552 0.78358 0.79864 0.82724 1.19965 1.21112 1.19988 1.20024 0.93829 0.95252 0.91766 1.20814 0.98316 0.92617 0.98606 1.20947 1.00700 0.96304 0.97344 1.20787 1.02847 0.98732 0.94422 1.20894 1.01630 0.94335 0.98173 1.20985 0.99847 0.95109 0.97719 0.92849 0.93064 0.92517 0.92016 0.91984 0.92159 0.92737 0.92678 0.91400 0.91208 0.92173 0.92625 0.76111 0.92322 0.87195 0.87643 0.87754 0.87598 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -1.07 5.40 -26.73 -0.14 -1.21 16 3 C -0.09 -0.90 2.39 -90.62 -0.22 -1.11 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.54 8.70 37.15 0.32 -1.22 16 6 C -0.13 -1.51 4.80 -26.73 -0.13 -1.64 16 7 C 0.12 1.87 5.43 -4.04 -0.02 1.84 16 8 N -0.73 -13.63 5.46 -60.29 -0.33 -13.96 16 9 C 0.53 11.89 7.04 -10.99 -0.08 11.81 16 10 O -0.57 -14.15 15.42 5.56 0.09 -14.06 16 11 C 0.05 1.20 2.38 -94.08 -0.22 0.98 16 12 H 0.09 2.22 7.13 -51.93 -0.37 1.85 16 13 C -0.51 -12.93 7.47 -34.44 -0.26 -13.19 16 14 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 15 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 16 N -0.88 -23.23 12.84 55.43 0.71 -22.52 16 17 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.01 -0.18 4.30 -104.62 -0.45 -0.63 16 22 C -0.09 -1.97 8.30 -39.59 -0.33 -2.30 16 23 C -0.13 -2.74 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.67 6.57 -51.92 -0.34 0.33 16 33 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 7.16 8.36 -40.82 -0.34 6.82 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.11 2.57 7.89 -52.49 -0.41 2.15 16 42 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 2.40 7.96 -52.49 -0.42 1.98 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -28.71 366.89 -9.39 -38.10 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.53 Total: 10.24 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.84 Total: -18.20 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.38 Total: -36.48 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.71 -9.39 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.973 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds