Wall clock time and date at job start Tue Mar 31 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 H 1.08997 * 109.46787 * 305.00082 * 3 2 1 5 5 C 1.52995 * 109.46801 * 65.00278 * 3 2 1 6 6 C 1.52997 * 109.47105 * 185.00271 * 3 2 1 7 7 C 1.53002 * 109.47043 * 175.00185 * 6 3 2 8 8 N 1.46502 * 109.46927 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99701 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00331 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99681 * 179.97438 * 9 8 7 12 12 H 1.09001 * 109.47188 * 60.00980 * 11 9 8 13 13 C 1.50699 * 109.47544 * 300.00287 * 11 9 8 14 14 H 1.07996 * 120.00008 * 324.88499 * 13 11 9 15 15 C 1.37876 * 119.99868 * 144.88060 * 13 11 9 16 16 N 1.31516 * 120.00046 * 5.19570 * 15 13 11 17 17 Si 1.86800 * 119.99939 * 185.19436 * 15 13 11 18 18 H 1.48495 * 109.47126 * 59.99941 * 17 15 13 19 19 H 1.48504 * 109.47168 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47211 * 299.99836 * 17 15 13 21 21 C 1.50704 * 109.47002 * 180.02562 * 11 9 8 22 22 C 1.38230 * 120.00016 * 66.01658 * 21 11 9 23 23 C 1.38236 * 119.99959 * 179.81394 * 22 21 11 24 24 C 1.38237 * 120.00190 * 0.39368 * 23 22 21 25 25 C 1.38236 * 119.99833 * 359.85756 * 24 23 22 26 26 C 1.38238 * 120.00006 * 359.96026 * 25 24 23 27 27 H 1.08998 * 109.46836 * 59.99515 * 1 2 3 28 28 H 1.08994 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46921 * 300.00432 * 1 2 3 30 30 H 1.09006 * 109.46656 * 240.00095 * 2 1 3 31 31 H 1.08998 * 109.46836 * 120.00485 * 2 1 3 32 32 H 1.09007 * 109.47242 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47314 * 299.99733 * 5 3 2 34 34 H 1.08994 * 109.47862 * 59.99847 * 5 3 2 35 35 H 1.09001 * 109.47609 * 54.99939 * 6 3 2 36 36 H 1.09004 * 109.47215 * 294.99849 * 6 3 2 37 37 H 1.08998 * 109.46933 * 60.00189 * 7 6 3 38 38 H 1.08996 * 109.47445 * 299.99747 * 7 6 3 39 39 H 0.96996 * 120.00554 * 359.97438 * 8 7 6 40 40 H 0.97005 * 120.00023 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99842 * 359.97438 * 22 21 11 42 42 H 1.08005 * 119.99900 * 180.22970 * 23 22 21 43 43 H 1.08001 * 120.00148 * 179.83920 * 24 23 22 44 44 H 1.07990 * 120.00067 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00306 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5649 1.4442 -0.1258 7 6 4.0646 2.8849 -0.2511 8 7 5.5247 2.8865 -0.3710 9 6 6.1894 4.0526 -0.4943 10 8 5.5788 5.1004 -0.5056 11 6 7.6914 4.0543 -0.6170 12 1 7.9843 3.4895 -1.5020 13 6 8.2963 3.4182 0.6080 14 1 7.8319 3.5561 1.5732 15 6 9.4425 2.6601 0.4964 16 7 10.0651 2.5757 -0.6590 17 14 10.1111 1.7530 1.9862 18 1 9.0919 0.7919 2.4790 19 1 11.3426 1.0157 1.6053 20 1 10.4299 2.7296 3.0585 21 6 8.1836 5.4733 -0.7406 22 6 8.0400 6.3495 0.3189 23 6 8.4950 7.6500 0.2069 24 6 9.0863 8.0767 -0.9675 25 6 9.2252 7.2020 -2.0289 26 6 8.7736 5.9004 -1.9156 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.9984 3.1543 1.3072 33 1 0.5491 2.1252 1.3970 34 1 2.0699 1.5874 2.1492 35 1 3.8571 0.8799 -1.0114 36 1 4.0031 0.9834 0.7596 37 1 3.7725 3.4491 0.6345 38 1 3.6266 3.3457 -1.1364 39 1 6.0132 2.0486 -0.3616 40 1 10.8714 2.0421 -0.7376 41 1 7.5746 6.0172 1.2351 42 1 8.3861 8.3335 1.0360 43 1 9.4394 9.0935 -1.0559 44 1 9.6867 7.5354 -2.9465 45 1 8.8825 5.2168 -2.7446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586928922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:30 Heat of formation + Delta-G solvation = -64.424441 kcal Electronic energy + Delta-G solvation = -22801.628150 eV Core-core repulsion = 19588.823109 eV Total energy + Delta-G solvation = -3212.805041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85440 -39.42396 -38.24107 -35.53054 -35.37529 -32.90610 -31.84672 -31.53650 -29.49516 -28.48933 -26.29633 -25.42421 -23.23660 -23.00427 -22.23245 -21.20042 -20.50172 -18.66491 -17.72269 -17.56153 -16.87892 -16.54956 -16.30223 -15.89277 -15.56130 -15.54255 -15.04455 -14.70862 -14.46464 -14.22028 -14.04452 -13.89897 -13.56942 -13.40432 -13.27480 -12.86211 -12.81056 -12.73399 -12.70801 -12.52116 -12.19321 -11.98639 -11.92797 -11.70506 -11.53860 -11.38037 -11.33104 -11.27789 -10.67967 -10.41486 -9.85493 -9.55962 -9.25475 -8.20632 -6.32819 0.75560 0.80714 1.44201 1.45118 1.52613 1.95933 2.43179 2.56941 3.08325 3.27329 3.79842 3.93669 4.02605 4.22068 4.28164 4.29991 4.37162 4.41987 4.50032 4.53949 4.59076 4.64805 4.71550 4.76788 4.87245 4.89640 4.97446 5.05664 5.08986 5.11484 5.17879 5.21853 5.25302 5.30757 5.37318 5.44788 5.55250 5.56756 5.64618 5.72316 5.78250 5.83408 5.95436 6.23947 6.40786 6.71152 6.81174 7.34365 7.56088 8.87255 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.004343 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.065436 B = 6445.801662 C = 7845.636935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.117 4.117 7 C 0.121 3.879 8 N -0.720 5.720 9 C 0.523 3.477 10 O -0.596 6.596 11 C 0.052 3.948 12 H 0.066 0.934 13 C -0.518 4.518 14 H 0.052 0.948 15 C 0.035 3.965 16 N -0.905 5.905 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.279 1.279 21 C -0.037 4.037 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.143 4.143 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.409 0.591 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -2.895 0.458 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.209 4.209 6 C -0.155 4.155 7 C -0.002 4.002 8 N -0.371 5.371 9 C 0.312 3.688 10 O -0.478 6.478 11 C 0.031 3.969 12 H 0.084 0.916 13 C -0.555 4.555 14 H 0.070 0.930 15 C -0.167 4.167 16 N -0.542 5.542 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.205 1.205 21 C -0.038 4.038 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.244 0.756 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.849 -2.271 0.353 12.070 hybrid contribution 0.868 -0.887 0.676 1.413 sum -10.981 -3.158 1.029 11.472 Atomic orbital electron populations 1.21814 0.95170 1.01953 1.02039 1.21548 0.96475 0.95167 1.02260 1.21066 0.93318 0.97263 0.98700 0.91047 1.21951 1.01886 1.00018 0.97038 1.21809 0.96590 0.93976 1.03135 1.21403 0.79632 0.98611 1.00603 1.45904 1.07608 1.09118 1.74489 1.21446 0.91191 0.82977 0.73198 1.90539 1.71193 1.32982 1.53071 1.18013 0.87212 0.91631 1.00080 0.91600 1.20703 1.10881 1.31484 0.92457 0.92992 1.25605 0.96233 0.96444 0.98464 1.70018 1.18561 1.39919 1.25685 0.85655 0.78000 0.78781 0.79533 1.18655 1.20822 1.20485 1.20138 0.95237 0.95420 0.93013 1.20847 0.99990 0.94242 0.97992 1.21329 0.99585 0.95441 0.98985 1.21275 1.01199 1.00482 0.93217 1.21310 1.00397 0.93144 0.99867 1.21145 1.00970 0.96715 0.97307 0.92743 0.92195 0.92314 0.91735 0.91839 0.93681 0.91317 0.92620 0.90601 0.91033 0.92984 0.93063 0.75561 0.92342 0.88824 0.84653 0.83455 0.84177 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 71.98 0.70 -1.42 16 2 C -0.12 -1.88 5.40 30.60 0.17 -1.71 16 3 C -0.08 -1.62 2.39 -10.80 -0.03 -1.64 16 4 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.15 -2.93 8.70 71.98 0.63 -2.30 16 6 C -0.12 -2.70 4.80 30.59 0.15 -2.56 16 7 C 0.12 3.78 5.43 86.38 0.47 4.25 16 8 N -0.72 -27.56 5.46 -463.06 -2.53 -30.08 16 9 C 0.52 24.57 7.04 87.66 0.62 25.18 16 10 O -0.60 -30.68 15.42 -3.04 -0.05 -30.72 16 11 C 0.05 2.60 2.38 -13.03 -0.03 2.57 16 12 H 0.07 3.53 7.13 -2.39 -0.02 3.51 16 13 C -0.52 -26.77 7.47 25.60 0.19 -26.58 16 14 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 15 C 0.03 1.78 5.45 84.65 0.46 2.24 16 16 N -0.91 -48.83 12.84 21.45 0.28 -48.56 16 17 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 C -0.04 -1.83 4.30 -19.86 -0.09 -1.92 16 22 C -0.11 -5.29 8.30 22.27 0.18 -5.10 16 23 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 24 C -0.14 -5.08 10.05 22.27 0.22 -4.85 16 25 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 26 C -0.14 -6.50 9.67 22.27 0.22 -6.28 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.79 6.56 -2.39 -0.02 0.77 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.00 6.57 -2.38 -0.02 0.98 16 33 H 0.07 1.12 6.57 -2.39 -0.02 1.11 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.73 6.57 -2.39 -0.02 1.72 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 14.78 8.36 -92.71 -0.77 14.01 16 40 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 41 H 0.09 4.56 7.89 -2.91 -0.02 4.54 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 44 H 0.14 4.25 8.06 -2.92 -0.02 4.23 16 45 H 0.11 4.77 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -62.75 366.89 4.21 -58.54 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.18 Total: 37.72 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 4.30 Total: -29.87 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.25 Total: -78.64 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -62.75 4.21 -58.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.889 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds