Wall clock time and date at job start Tue Mar 31 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 H 1.09007 * 109.47307 * 54.99992 * 3 2 1 5 5 C 1.53001 * 109.47150 * 295.00366 * 3 2 1 6 6 C 1.52999 * 109.47425 * 175.00276 * 3 2 1 7 7 C 1.52998 * 109.47197 * 185.00286 * 6 3 2 8 8 N 1.46499 * 109.47483 * 179.97438 * 7 6 3 9 9 C 1.34775 * 120.00489 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99791 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00184 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.46759 * 322.42946 * 11 9 8 13 13 C 1.50699 * 109.47465 * 82.42979 * 11 9 8 14 14 H 1.07996 * 119.99697 * 54.78520 * 13 11 9 15 15 C 1.37878 * 120.00176 * 234.78247 * 13 11 9 16 16 N 1.31513 * 119.99918 * 175.92086 * 15 13 11 17 17 Si 1.86803 * 119.99996 * 355.91882 * 15 13 11 18 18 H 1.48494 * 109.47095 * 83.73332 * 17 15 13 19 19 H 1.48493 * 109.46938 * 203.73764 * 17 15 13 20 20 H 1.48506 * 109.46889 * 323.73079 * 17 15 13 21 21 C 1.50699 * 109.46852 * 202.43410 * 11 9 8 22 22 C 1.38238 * 119.99787 * 112.25410 * 21 11 9 23 23 C 1.38242 * 119.99726 * 179.97438 * 22 21 11 24 24 C 1.38236 * 119.99747 * 359.95714 * 23 22 21 25 25 C 1.38225 * 120.00356 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99852 * 292.22546 * 21 11 9 27 27 H 1.08996 * 109.47585 * 59.99785 * 1 2 3 28 28 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46975 * 299.99798 * 1 2 3 30 30 H 1.08998 * 109.47303 * 240.00464 * 2 1 3 31 31 H 1.08996 * 109.47585 * 120.00215 * 2 1 3 32 32 H 1.09003 * 109.47270 * 299.99538 * 5 3 2 33 33 H 1.09000 * 109.47414 * 60.00083 * 5 3 2 34 34 H 1.09004 * 109.47249 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47064 * 65.00186 * 6 3 2 36 36 H 1.08997 * 109.46950 * 304.99682 * 6 3 2 37 37 H 1.08997 * 109.47443 * 59.99504 * 7 6 3 38 38 H 1.09007 * 109.47223 * 299.99675 * 7 6 3 39 39 H 0.97006 * 119.99494 * 0.02562 * 8 7 6 40 40 H 0.96993 * 119.99949 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.00552 * 359.97438 * 22 21 11 42 42 H 1.07995 * 119.99820 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99352 * 179.71526 * 24 23 22 44 44 H 1.07995 * 120.00434 * 179.97438 * 25 24 23 45 45 H 1.07994 * 120.00275 * 0.02562 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 6 4.0644 2.8850 0.2511 8 7 5.5244 2.8869 0.3720 9 6 6.1890 4.0529 0.4946 10 8 5.5785 5.1008 0.5043 11 6 7.6910 4.0547 0.6184 12 1 8.0065 3.2057 1.2249 13 6 8.3082 3.9500 -0.7524 14 1 8.0411 4.6606 -1.5205 15 6 9.2140 2.9471 -1.0258 16 7 9.6917 2.8065 -2.2430 17 14 9.7626 1.7882 0.3327 18 1 8.7702 0.6934 0.4801 19 1 11.0871 1.2125 -0.0127 20 1 9.8666 2.5375 1.6106 21 6 8.1392 5.3351 1.2748 22 6 8.6950 5.3053 2.5402 23 6 9.1067 6.4797 3.1420 24 6 8.9634 7.6837 2.4781 25 6 8.4090 7.7133 1.2123 26 6 7.9952 6.5392 0.6112 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5876 -2.1492 33 1 0.5488 2.1253 -1.3969 34 1 1.9981 3.1544 -1.3071 35 1 4.0028 0.9837 -0.7598 36 1 3.8570 0.8801 1.0112 37 1 3.6263 3.3458 1.1364 38 1 3.7721 3.4494 -0.6345 39 1 6.0128 2.0488 0.3632 40 1 10.3287 2.1007 -2.4354 41 1 8.8076 4.3646 3.0586 42 1 9.5405 6.4565 4.1308 43 1 9.2809 8.6017 2.9502 44 1 8.2967 8.6540 0.6938 45 1 7.5611 6.5624 -0.3773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586928923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:32 Heat of formation + Delta-G solvation = -63.883402 kcal Electronic energy + Delta-G solvation = -22854.151331 eV Core-core repulsion = 19641.369751 eV Total energy + Delta-G solvation = -3212.781580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98211 -39.52219 -38.27247 -35.52218 -35.46246 -33.39913 -31.89509 -31.62386 -29.70922 -28.69647 -26.31731 -25.22685 -23.37298 -23.06597 -22.30948 -21.22827 -20.52486 -19.14095 -17.88392 -17.69121 -16.94150 -16.62039 -16.35786 -15.88507 -15.63279 -15.45183 -15.09290 -14.80665 -14.57002 -14.44268 -14.19798 -14.08746 -13.72874 -13.60720 -13.33742 -12.90436 -12.82806 -12.76770 -12.73502 -12.53605 -12.06640 -11.97369 -11.92405 -11.71938 -11.57292 -11.42754 -11.37325 -11.33568 -10.90480 -10.56152 -9.94173 -9.64084 -9.37664 -8.36302 -6.45630 0.63466 0.70417 1.32328 1.39285 1.48056 1.88639 2.29528 2.45534 2.98977 3.15916 3.77122 3.91704 3.99294 4.07696 4.21791 4.24514 4.31167 4.36410 4.41721 4.42634 4.48090 4.57519 4.59853 4.69622 4.75472 4.83356 4.87956 4.89219 5.02687 5.08167 5.16352 5.19851 5.21313 5.24469 5.29237 5.32891 5.38766 5.53522 5.55459 5.65019 5.69822 5.74927 5.94924 6.19219 6.31044 6.57212 6.69928 7.18487 7.45571 8.79358 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.004393 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.797198 B = 6372.067903 C = 7479.531377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.074 0.926 5 C -0.153 4.153 6 C -0.119 4.119 7 C 0.120 3.880 8 N -0.726 5.726 9 C 0.525 3.475 10 O -0.589 6.589 11 C 0.035 3.965 12 H 0.075 0.925 13 C -0.506 4.506 14 H 0.028 0.972 15 C 0.029 3.971 16 N -0.934 5.934 17 Si 0.931 3.069 18 H -0.240 1.240 19 H -0.286 1.286 20 H -0.243 1.243 21 C -0.064 4.064 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.102 4.102 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.406 0.594 40 H 0.272 0.728 41 H 0.127 0.873 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.132 0.868 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.015 -4.797 10.102 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.093 0.907 5 C -0.211 4.211 6 C -0.157 4.157 7 C -0.003 4.003 8 N -0.377 5.377 9 C 0.313 3.687 10 O -0.470 6.470 11 C 0.013 3.987 12 H 0.093 0.907 13 C -0.544 4.544 14 H 0.046 0.954 15 C -0.171 4.171 16 N -0.571 5.571 17 Si 0.752 3.248 18 H -0.164 1.164 19 H -0.212 1.212 20 H -0.167 1.167 21 C -0.065 4.065 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.120 4.120 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.241 0.759 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.150 0.850 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.362 -4.174 9.968 15.681 hybrid contribution 0.690 -0.660 -0.597 1.126 sum -10.672 -4.834 9.370 15.002 Atomic orbital electron populations 1.21815 0.95183 1.01968 1.02033 1.21544 0.96474 0.95093 1.02308 1.21068 0.93306 0.97321 0.98588 0.90719 1.21966 1.01911 0.99977 0.97204 1.21832 0.96665 0.93918 1.03253 1.21422 0.79373 0.98737 1.00755 1.45956 1.08005 1.08786 1.74966 1.21386 0.90841 0.83196 0.73255 1.90536 1.70813 1.32901 1.52787 1.18290 0.89172 0.94455 0.96786 0.90729 1.20486 1.25615 1.14038 0.94261 0.95413 1.25939 0.94903 0.98397 0.97853 1.70014 1.31422 1.33869 1.21812 0.85968 0.79010 0.79625 0.80170 1.16359 1.21170 1.16682 1.20054 0.97358 0.95125 0.93944 1.21283 1.01030 0.99660 0.94427 1.21383 1.00053 0.91909 1.00827 1.21367 1.00187 0.99005 0.94587 1.21354 0.99792 0.97578 0.96724 1.20856 0.98949 0.93344 0.98893 0.92490 0.92169 0.92595 0.92032 0.91414 0.92896 0.91241 0.93836 0.91372 0.89935 0.92338 0.93484 0.75925 0.91893 0.85523 0.83058 0.83092 0.84987 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 71.98 0.70 -1.40 16 2 C -0.12 -1.84 5.40 30.59 0.17 -1.67 16 3 C -0.08 -1.59 2.39 -10.79 -0.03 -1.62 16 4 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 5 C -0.15 -3.11 8.70 71.98 0.63 -2.48 16 6 C -0.12 -2.69 4.80 30.59 0.15 -2.54 16 7 C 0.12 3.73 5.43 86.38 0.47 4.20 16 8 N -0.73 -27.03 5.56 -463.06 -2.57 -29.60 16 9 C 0.52 24.15 6.93 87.66 0.61 24.76 16 10 O -0.59 -30.26 15.23 -3.03 -0.05 -30.30 16 11 C 0.03 1.63 2.22 -13.03 -0.03 1.60 16 12 H 0.07 3.20 4.57 -2.38 -0.01 3.19 16 13 C -0.51 -28.30 8.24 25.60 0.21 -28.09 16 14 H 0.03 1.80 7.69 -2.91 -0.02 1.78 16 15 C 0.03 1.58 5.47 84.66 0.46 2.04 16 16 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 17 Si 0.93 39.40 26.93 68.60 1.85 41.25 16 18 H -0.24 -8.94 7.11 99.48 0.71 -8.24 16 19 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.24 -9.58 6.81 99.48 0.68 -8.90 16 21 C -0.06 -2.92 4.53 -19.87 -0.09 -3.01 16 22 C -0.15 -5.58 9.67 22.27 0.22 -5.36 16 23 C -0.12 -3.93 10.05 22.27 0.22 -3.70 16 24 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 25 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 26 C -0.10 -4.73 8.05 22.27 0.18 -4.55 16 27 H 0.06 0.78 6.56 -2.39 -0.02 0.76 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.19 6.57 -2.39 -0.02 1.17 16 34 H 0.04 1.02 6.57 -2.38 -0.02 1.00 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.63 6.57 -2.38 -0.02 1.61 16 39 H 0.41 13.59 8.47 -92.70 -0.79 12.80 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.13 4.29 7.96 -2.91 -0.02 4.26 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 43 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 45 H 0.08 4.39 7.44 -2.91 -0.02 4.36 16 Total: -1.00 -70.03 362.49 3.98 -66.05 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.15 Total: 38.47 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 4.31 Total: -30.66 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.27 Total: -84.80 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.85 Total: 41.25 kcal Total: -70.03 3.98 -66.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586928923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.164 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds