Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47247 * 2 1 4 4 C 1.36936 * 120.00036 * 84.42321 * 3 2 1 5 5 H 1.07995 * 119.99969 * 170.02738 * 4 3 2 6 6 C 1.38819 * 119.99529 * 350.02946 * 4 3 2 7 7 N 1.31613 * 120.00560 * 1.29074 * 6 4 3 8 8 Si 1.86804 * 119.99497 * 181.29289 * 6 4 3 9 9 H 1.48506 * 109.47374 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47523 * 119.99966 * 8 6 4 11 11 H 1.48502 * 109.46936 * 240.00035 * 8 6 4 12 12 C 1.46494 * 119.99983 * 264.42785 * 3 2 1 13 13 C 1.50708 * 109.47099 * 270.95488 * 12 3 2 14 14 C 1.38416 * 119.91196 * 279.33170 * 13 12 3 15 15 C 1.50704 * 119.82782 * 0.02562 * 14 13 12 16 16 C 1.38389 * 120.34951 * 179.97438 * 14 13 12 17 17 C 1.37906 * 120.16999 * 359.71572 * 16 14 13 18 18 C 1.50700 * 120.08713 * 180.27790 * 17 16 14 19 19 C 1.39836 * 119.82152 * 0.53930 * 17 16 14 20 20 C 1.47163 * 120.16980 * 179.73887 * 19 17 16 21 21 C 1.50706 * 120.00233 * 274.58819 * 20 19 17 22 22 O 1.21253 * 120.00345 * 94.58537 * 20 19 17 23 23 C 1.37862 * 119.91398 * 99.30968 * 13 12 3 24 24 C 1.50707 * 120.08510 * 359.97438 * 23 13 12 25 25 H 1.09000 * 109.46818 * 305.90204 * 1 2 3 26 26 H 1.08997 * 109.47199 * 65.89745 * 1 2 3 27 27 H 1.08998 * 109.47022 * 185.90442 * 1 2 3 28 28 H 1.08996 * 109.46988 * 240.00439 * 2 1 3 29 29 H 1.08997 * 109.47154 * 120.00230 * 2 1 3 30 30 H 0.96994 * 120.00526 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47301 * 150.95948 * 12 3 2 32 32 H 1.09005 * 109.47596 * 30.95131 * 12 3 2 33 33 H 1.08996 * 109.47382 * 89.99957 * 15 14 13 34 34 H 1.09005 * 109.47092 * 210.00098 * 15 14 13 35 35 H 1.09002 * 109.47175 * 329.99714 * 15 14 13 36 36 H 1.08002 * 119.91514 * 179.97438 * 16 14 13 37 37 H 1.09004 * 109.47262 * 274.78944 * 18 17 16 38 38 H 1.08995 * 109.47283 * 34.79479 * 18 17 16 39 39 H 1.09002 * 109.46457 * 154.79672 * 18 17 16 40 40 H 1.09001 * 109.47103 * 234.99373 * 21 20 19 41 41 H 1.08995 * 109.47055 * 114.99150 * 21 20 19 42 42 H 1.09005 * 109.46420 * 354.99120 * 21 20 19 43 43 H 1.09005 * 109.47221 * 263.36568 * 24 23 13 44 44 H 1.08991 * 109.47268 * 23.37112 * 24 23 13 45 45 H 1.09002 * 109.46994 * 143.37611 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1380 2.0652 1.1803 5 1 2.6453 3.0183 1.2030 6 6 1.6072 1.5332 2.3475 7 7 1.0114 0.3599 2.3246 8 14 1.7386 2.4829 3.9507 9 1 2.4490 3.7647 3.7101 10 1 0.3772 2.7617 4.4740 11 1 2.4948 1.6771 4.9428 12 6 2.3787 2.0308 -1.2627 13 6 3.8296 1.7624 -1.5695 14 6 4.8157 2.5149 -0.9552 15 6 4.4334 3.5995 0.0188 16 6 6.1508 2.2758 -1.2299 17 6 6.5090 1.2806 -2.1148 18 6 7.9636 1.0177 -2.4078 19 6 5.5185 0.5196 -2.7435 20 6 5.8918 -0.5405 -3.6934 21 6 6.1428 -0.2018 -5.1403 22 8 5.9976 -1.6867 -3.3121 23 6 4.1713 0.7678 -2.4609 24 6 3.0961 -0.0510 -3.1278 25 1 -0.3633 0.6026 0.8324 26 1 -0.3633 0.4197 -0.9380 27 1 -0.3633 -1.0222 0.1057 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.6402 -0.0116 3.1401 31 1 2.2183 3.1055 -1.1772 32 1 1.7581 1.6334 -2.0658 33 1 4.3791 3.1823 1.0243 34 1 5.1826 4.3909 -0.0062 35 1 3.4621 4.0099 -0.2572 36 1 6.9144 2.8675 -0.7469 37 1 8.3030 1.6905 -3.1954 38 1 8.5523 1.1874 -1.5063 39 1 8.0876 -0.0150 -2.7337 40 1 5.5060 -0.8193 -5.7738 41 1 7.1887 -0.3913 -5.3817 42 1 5.9151 0.8503 -5.3118 43 1 2.9578 -0.9837 -2.5808 44 1 2.1618 0.5101 -3.1314 45 1 3.3913 -0.2719 -4.1536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = 14.025763 kcal Electronic energy + Delta-G solvation = -24232.112571 eV Core-core repulsion = 21022.709386 eV Total energy + Delta-G solvation = -3209.403185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18465 -38.44906 -36.06000 -33.60842 -33.33900 -30.95422 -30.23516 -29.38354 -27.71472 -27.39612 -26.58017 -24.49056 -22.91738 -21.58471 -20.53519 -19.92224 -18.60352 -16.79171 -16.20305 -15.95300 -15.36074 -15.04942 -14.32935 -14.19194 -13.90461 -13.60408 -13.41136 -13.21396 -12.89966 -12.81338 -12.62995 -12.51481 -12.36655 -12.27720 -12.11430 -11.82053 -11.66385 -11.33765 -11.06991 -11.02806 -10.85404 -10.80764 -10.54933 -10.47174 -10.21392 -9.75539 -9.55952 -9.47209 -9.34193 -8.29669 -8.12374 -7.94738 -6.77415 -5.55696 -3.06420 1.56796 1.78309 1.98421 3.38620 3.43886 3.47061 3.97782 4.18072 4.53118 4.94159 5.02560 5.09014 5.24636 5.28113 5.42905 5.44116 5.51026 5.58530 5.61212 5.65077 5.76714 5.79245 5.85606 5.91445 5.97275 5.99589 6.06221 6.18643 6.34946 6.41433 6.54537 6.70365 6.73996 6.75513 6.78160 6.90288 7.07978 7.17618 7.27015 7.36119 7.42538 7.52771 7.71409 8.00836 8.23054 8.52072 9.33501 9.93050 10.36158 11.35920 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.005500 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.623335 B = 5089.683811 C = 5881.078544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.165 3.835 3 N -0.590 5.590 4 C -0.243 4.243 5 H 0.087 0.913 6 C -0.012 4.012 7 N -0.907 5.907 8 Si 0.903 3.097 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.293 1.293 12 C 0.178 3.822 13 C -0.088 4.088 14 C -0.040 4.040 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.067 4.067 18 C -0.114 4.114 19 C -0.172 4.172 20 C 0.413 3.587 21 C -0.199 4.199 22 O -0.454 6.454 23 C -0.042 4.042 24 C -0.121 4.121 25 H 0.085 0.915 26 H -0.003 1.003 27 H 0.018 0.982 28 H 0.000 1.000 29 H 0.100 0.900 30 H 0.247 0.753 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 3.501 -12.626 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 N -0.311 5.311 4 C -0.372 4.372 5 H 0.104 0.896 6 C -0.207 4.207 7 N -0.556 5.556 8 Si 0.735 3.265 9 H -0.206 1.206 10 H -0.219 1.219 11 H -0.220 1.220 12 C 0.050 3.950 13 C -0.091 4.091 14 C -0.041 4.041 15 C -0.175 4.175 16 C -0.151 4.151 17 C -0.067 4.067 18 C -0.171 4.171 19 C -0.173 4.173 20 C 0.289 3.711 21 C -0.256 4.256 22 O -0.328 6.328 23 C -0.043 4.043 24 C -0.177 4.177 25 H 0.103 0.897 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.018 0.982 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.902 2.808 -12.248 15.400 hybrid contribution 0.092 0.414 0.966 1.055 sum 8.994 3.222 -11.282 14.784 Atomic orbital electron populations 1.22368 0.99311 0.98733 0.98797 1.21074 0.92330 0.84141 0.98406 1.44161 1.74614 1.11560 1.00732 1.19765 1.29351 1.02462 0.85590 0.89590 1.24849 1.00215 0.97534 0.98088 1.70233 1.42753 1.17138 1.25505 0.86175 0.77194 0.78963 0.84199 1.20588 1.21871 1.21999 1.19856 0.88082 0.97258 0.89761 1.20823 0.99407 0.94593 0.94293 1.19868 0.92259 0.96504 0.95451 1.21140 1.01313 0.95555 0.99471 1.20699 0.95749 0.98967 0.99701 1.19565 0.94153 0.95727 0.97267 1.20788 0.92589 1.01477 1.02207 1.19986 0.94079 1.00448 1.02777 1.22525 0.70501 0.87594 0.90513 1.22278 1.04105 1.04377 0.94840 1.90553 1.38380 1.22684 1.81160 1.19603 0.91914 0.95969 0.96806 1.20973 0.97856 1.00103 0.98779 0.89681 0.98388 0.96303 0.98202 0.88272 0.94206 0.92460 0.93042 0.89160 0.93187 0.90769 0.86412 0.91196 0.91239 0.92352 0.89105 0.88997 0.89816 0.90647 0.90201 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.34 37.16 0.35 -2.80 16 2 C 0.16 4.03 5.70 -4.04 -0.02 4.00 16 3 N -0.59 -14.02 2.52 -174.60 -0.44 -14.46 16 4 C -0.24 -6.16 8.85 -15.06 -0.13 -6.30 16 5 H 0.09 2.06 4.28 -52.49 -0.22 1.83 16 6 C -0.01 -0.31 5.24 -17.43 -0.09 -0.40 16 7 N -0.91 -25.07 7.31 55.49 0.41 -24.67 16 8 Si 0.90 21.31 29.55 -169.99 -5.02 16.28 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C 0.18 3.51 5.06 -5.19 -0.03 3.49 16 13 C -0.09 -1.63 5.46 -104.69 -0.57 -2.20 16 14 C -0.04 -0.71 5.89 -104.50 -0.62 -1.32 16 15 C -0.12 -1.99 7.93 36.01 0.29 -1.70 16 16 C -0.13 -2.10 9.35 -39.65 -0.37 -2.47 16 17 C -0.07 -1.01 5.92 -104.15 -0.62 -1.63 16 18 C -0.11 -1.34 9.69 36.01 0.35 -0.99 16 19 C -0.17 -2.79 5.46 -105.07 -0.57 -3.36 16 20 C 0.41 6.05 3.68 -30.68 -0.11 5.94 16 21 C -0.20 -1.95 10.32 36.01 0.37 -1.58 16 22 O -0.45 -8.20 17.86 5.58 0.10 -8.10 16 23 C -0.04 -0.73 5.92 -104.15 -0.62 -1.35 16 24 C -0.12 -1.90 8.27 36.01 0.30 -1.61 16 25 H 0.08 2.26 6.12 -51.93 -0.32 1.95 16 26 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.00 0.00 6.04 -51.93 -0.31 -0.32 16 29 H 0.10 2.77 5.88 -51.93 -0.31 2.46 16 30 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.06 1.10 6.25 -51.93 -0.32 0.77 16 32 H 0.05 0.96 5.47 -51.93 -0.28 0.68 16 33 H 0.09 1.72 6.51 -51.93 -0.34 1.38 16 34 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.07 1.26 5.42 -51.93 -0.28 0.98 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.06 0.71 6.93 -51.93 -0.36 0.35 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.72 7.99 -51.93 -0.42 0.31 16 43 H 0.07 1.30 7.22 -51.93 -0.37 0.93 16 44 H 0.08 1.22 5.59 -51.93 -0.29 0.93 16 45 H 0.05 0.72 7.35 -51.93 -0.38 0.34 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -29.56 344.95 -8.58 -38.14 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.72 Total: 1.90 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.10 Total: -14.29 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.04 Total: -39.13 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.10 Total: -8.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.56 -8.58 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.168 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds