Wall clock time and date at job start Tue Mar 31 2020 06:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00169 * 2 1 4 4 C 1.50702 * 109.46743 * 293.94842 * 3 2 1 5 5 C 1.38306 * 119.93168 * 269.73293 * 4 3 2 6 6 C 1.38099 * 120.07067 * 179.72696 * 5 4 3 7 7 C 1.38879 * 119.92643 * 0.56182 * 6 5 4 8 8 O 1.35760 * 120.06759 * 179.68383 * 7 6 5 9 9 C 1.34821 * 116.99941 * 174.49141 * 8 7 6 10 10 H 1.08009 * 120.00355 * 5.05110 * 9 8 7 11 11 C 1.38651 * 120.00017 * 185.05839 * 9 8 7 12 12 N 1.31558 * 120.00288 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00342 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46936 * 59.99965 * 13 11 9 15 15 H 1.48493 * 109.47594 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47225 * 300.00321 * 13 11 9 17 17 C 1.38879 * 119.86554 * 359.70817 * 7 6 5 18 18 C 1.38097 * 119.92930 * 0.02562 * 17 7 6 19 19 C 1.46904 * 110.99629 * 123.94951 * 2 1 3 20 20 C 1.52997 * 109.47257 * 66.04623 * 19 2 1 21 21 C 1.54960 * 110.92214 * 71.54215 * 20 19 2 22 22 C 1.54270 * 104.16264 * 156.29771 * 21 20 19 23 23 C 1.53886 * 106.63590 * 336.44167 * 22 21 20 24 24 C 1.54270 * 106.59758 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47286 * 296.05584 * 1 2 3 26 26 H 1.09003 * 109.46582 * 56.05183 * 1 2 3 27 27 H 1.08993 * 109.47211 * 176.04908 * 1 2 3 28 28 H 1.08994 * 109.47629 * 53.94519 * 3 2 1 29 29 H 1.09000 * 109.47032 * 173.95676 * 3 2 1 30 30 H 1.08004 * 119.96276 * 359.97432 * 5 4 3 31 31 H 1.08000 * 120.03495 * 180.27001 * 6 5 4 32 32 H 0.96998 * 120.00642 * 179.97438 * 12 11 9 33 33 H 1.08003 * 120.03622 * 179.97438 * 17 7 6 34 34 H 1.08000 * 119.96640 * 180.02562 * 18 17 7 35 35 H 1.09000 * 109.46799 * 306.04449 * 19 2 1 36 36 H 1.08999 * 109.46950 * 186.04956 * 19 2 1 37 37 H 1.09000 * 110.67356 * 308.23090 * 20 19 2 38 38 H 1.08997 * 110.47935 * 37.63988 * 21 20 19 39 39 H 1.09006 * 110.53071 * 274.97280 * 21 20 19 40 40 H 1.09000 * 110.03430 * 217.13677 * 22 21 20 41 41 H 1.09001 * 110.03480 * 95.74888 * 22 21 20 42 42 H 1.09002 * 110.02705 * 119.25730 * 23 22 21 43 43 H 1.09000 * 110.03226 * 240.64118 * 23 22 21 44 44 H 1.09004 * 110.48284 * 142.28579 * 24 23 22 45 45 H 1.08998 * 110.48493 * 264.80014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2985 5 6 2.4981 1.9684 -2.3780 6 6 2.1699 2.5817 -3.5710 7 6 0.9792 3.2877 -3.6826 8 8 0.6567 3.8970 -4.8521 9 6 -0.5624 4.4675 -4.9292 10 1 -1.2004 4.4983 -4.0582 11 6 -0.9974 5.0146 -6.1266 12 7 -0.2203 4.9774 -7.1876 13 14 -2.6868 5.8044 -6.2337 14 1 -2.7668 6.9342 -5.2732 15 1 -2.9108 6.3093 -7.6121 16 1 -3.7262 4.7972 -5.9010 17 6 0.1192 3.3694 -2.5951 18 6 0.4506 2.7494 -1.4065 19 6 1.9954 -0.7659 1.1377 20 6 1.6314 -2.2425 0.9706 21 6 2.4584 -2.8909 -0.1682 22 6 2.4587 -4.3950 0.1747 23 6 2.2069 -4.5017 1.6890 24 6 2.0629 -3.0584 2.2145 25 1 -0.3633 0.4514 0.9232 26 1 -0.3632 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9274 0.8307 29 1 3.0798 1.3443 0.1082 30 1 3.4264 1.4235 -2.2890 31 1 2.8407 2.5163 -4.4149 32 1 -0.5247 5.3598 -8.0254 33 1 -0.8073 3.9181 -2.6787 34 1 -0.2179 2.8123 -0.5606 35 1 1.5610 -0.3870 2.0628 36 1 3.0796 -0.6610 1.1758 37 1 0.5634 -2.3570 0.7850 38 1 3.4759 -2.5000 -0.1708 39 1 1.9806 -2.7197 -1.1329 40 1 3.4243 -4.8348 -0.0751 41 1 1.6646 -4.9029 -0.3726 42 1 1.2901 -5.0606 1.8766 43 1 3.0499 -4.9940 2.1739 44 1 1.2964 -3.0088 2.9880 45 1 3.0160 -2.6957 2.5994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264556660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:46 Heat of formation + Delta-G solvation = -16.001329 kcal Electronic energy + Delta-G solvation = -22472.207464 eV Core-core repulsion = 19261.502207 eV Total energy + Delta-G solvation = -3210.705257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.29770 -38.68253 -37.18289 -35.66784 -32.32047 -30.89789 -30.14647 -29.14677 -28.73610 -26.85238 -25.59720 -24.52599 -22.01002 -21.85156 -20.45881 -20.11695 -19.81338 -17.94356 -16.91142 -16.26121 -15.49367 -15.21706 -15.15646 -14.56653 -14.47666 -14.26531 -13.70700 -13.57114 -13.47322 -13.34185 -13.01862 -12.65098 -12.47657 -11.98261 -11.74652 -11.59324 -11.46880 -11.39615 -11.25344 -11.17375 -11.11305 -10.82562 -10.69533 -10.61664 -10.57131 -10.50572 -10.42177 -10.33992 -9.30624 -8.80939 -8.19167 -8.09758 -7.13471 -6.42824 -4.01715 2.26073 2.32490 3.13870 3.14967 3.17830 3.97921 4.02410 4.48638 4.52086 4.61218 4.73452 5.01927 5.12317 5.24448 5.26285 5.31762 5.33390 5.40946 5.43970 5.50387 5.53727 5.58123 5.64423 5.68001 5.72970 5.78059 5.82657 5.84813 5.89556 5.94680 5.97823 6.14614 6.17841 6.25258 6.28224 6.36035 6.46495 6.74769 6.94097 7.05060 7.18107 7.22281 7.32161 7.44525 7.48151 7.87089 8.02194 9.02755 9.73741 10.75260 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.002763 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.382049 B =10130.700749 C =10160.936862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.533 5.533 3 C 0.113 3.887 4 C -0.177 4.177 5 C -0.053 4.053 6 C -0.194 4.194 7 C 0.155 3.845 8 O -0.179 6.179 9 C -0.392 4.392 10 H 0.091 0.909 11 C 0.039 3.961 12 N -0.864 5.864 13 Si 0.940 3.060 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.270 1.270 17 C -0.235 4.235 18 C -0.066 4.066 19 C 0.062 3.938 20 C -0.089 4.089 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.120 4.120 25 H 0.018 0.982 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.270 0.730 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -13.530 16.981 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.257 5.257 3 C -0.014 4.014 4 C -0.178 4.178 5 C -0.071 4.071 6 C -0.214 4.214 7 C 0.102 3.898 8 O -0.082 6.082 9 C -0.468 4.468 10 H 0.108 0.892 11 C -0.165 4.165 12 N -0.499 5.499 13 Si 0.765 3.235 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.195 1.195 17 C -0.254 4.254 18 C -0.084 4.084 19 C -0.065 4.065 20 C -0.108 4.108 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.626 -13.645 16.085 21.402 hybrid contribution -1.243 0.790 0.714 1.637 sum 2.384 -12.855 16.798 21.286 Atomic orbital electron populations 1.22471 0.87706 1.01789 1.00767 1.62023 1.07906 1.13778 1.41959 1.20800 0.99139 0.86998 0.94424 1.19066 0.97409 1.05578 0.95772 1.20445 0.98052 0.96944 0.91702 1.20215 0.97832 1.04593 0.98717 1.19396 0.93121 0.90537 0.86790 1.83980 1.34174 1.60952 1.29096 1.21263 0.91094 1.36538 0.97902 0.89196 1.25275 0.99647 0.97360 0.94222 1.70027 1.36389 1.42473 1.00973 0.85798 0.80476 0.79319 0.77928 1.19543 1.20285 1.19524 1.21111 1.02611 1.07872 0.93809 1.20583 0.95305 0.96200 0.96352 1.22132 0.99866 0.93086 0.91463 1.22168 1.00254 0.93381 0.94960 1.22276 1.00048 0.93378 0.98724 1.22185 1.01300 0.97493 0.95644 1.22111 1.01176 0.96823 0.96014 1.22391 1.01111 0.94983 0.97343 0.96356 0.90309 0.91820 0.95195 0.91017 0.87139 0.86625 0.91996 0.85724 0.88021 0.95390 0.91008 0.90558 0.91777 0.91112 0.92183 0.92138 0.92185 0.92182 0.92073 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.99 60.07 0.54 0.81 16 2 N -0.53 -6.89 4.68 -244.37 -1.14 -8.03 16 3 C 0.11 1.56 5.12 -4.98 -0.03 1.53 16 4 C -0.18 -3.03 4.89 -104.57 -0.51 -3.54 16 5 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 6 C -0.19 -4.17 9.99 -39.40 -0.39 -4.56 16 7 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 8 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 9 C -0.39 -11.03 9.49 30.88 0.29 -10.73 16 10 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 11 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 12 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 13 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 18 C -0.07 -1.20 7.89 -39.61 -0.31 -1.51 16 19 C 0.06 0.66 4.40 -3.82 -0.02 0.64 16 20 C -0.09 -0.85 2.83 -88.59 -0.25 -1.10 16 21 C -0.11 -1.06 6.22 -25.03 -0.16 -1.22 16 22 C -0.13 -1.10 6.80 -25.61 -0.17 -1.27 16 23 C -0.12 -0.96 6.80 -25.61 -0.17 -1.13 16 24 C -0.12 -0.97 6.27 -25.07 -0.16 -1.13 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.08 1.17 5.89 -51.93 -0.31 0.86 16 27 H 0.06 0.74 6.34 -51.93 -0.33 0.41 16 28 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 29 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 30 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 34 H 0.10 1.62 7.98 -52.49 -0.42 1.20 16 35 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 37 H 0.08 0.78 6.31 -51.93 -0.33 0.46 16 38 H 0.06 0.65 7.95 -51.93 -0.41 0.24 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.50 8.05 -51.93 -0.42 0.09 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -29.77 356.31 -9.85 -39.63 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.37 Total: 2.86 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.44 Total: -25.53 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: -0.38 Total: -32.79 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.77 -9.85 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264556660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.627 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds