Wall clock time and date at job start Tue Mar 31 2020 06:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00169 * 2 1 4 4 C 1.50702 * 109.46743 * 293.94842 * 3 2 1 5 5 C 1.38306 * 119.93168 * 269.73293 * 4 3 2 6 6 C 1.38099 * 120.07067 * 179.72696 * 5 4 3 7 7 C 1.38879 * 119.92643 * 0.56182 * 6 5 4 8 8 O 1.35760 * 120.06759 * 179.68383 * 7 6 5 9 9 C 1.34821 * 116.99941 * 174.49141 * 8 7 6 10 10 H 1.08009 * 120.00355 * 5.05110 * 9 8 7 11 11 C 1.38651 * 120.00017 * 185.05839 * 9 8 7 12 12 N 1.31558 * 120.00288 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00342 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46936 * 59.99965 * 13 11 9 15 15 H 1.48493 * 109.47594 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47225 * 300.00321 * 13 11 9 17 17 C 1.38879 * 119.86554 * 359.70817 * 7 6 5 18 18 C 1.38097 * 119.92930 * 0.02562 * 17 7 6 19 19 C 1.46904 * 110.99629 * 123.94951 * 2 1 3 20 20 C 1.52997 * 109.47257 * 66.04623 * 19 2 1 21 21 C 1.54960 * 110.92214 * 71.54215 * 20 19 2 22 22 C 1.54270 * 104.16264 * 156.29771 * 21 20 19 23 23 C 1.53886 * 106.63590 * 336.44167 * 22 21 20 24 24 C 1.54270 * 106.59758 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47286 * 296.05584 * 1 2 3 26 26 H 1.09003 * 109.46582 * 56.05183 * 1 2 3 27 27 H 1.08993 * 109.47211 * 176.04908 * 1 2 3 28 28 H 1.08994 * 109.47629 * 53.94519 * 3 2 1 29 29 H 1.09000 * 109.47032 * 173.95676 * 3 2 1 30 30 H 1.08004 * 119.96276 * 359.97432 * 5 4 3 31 31 H 1.08000 * 120.03495 * 180.27001 * 6 5 4 32 32 H 0.96998 * 120.00642 * 179.97438 * 12 11 9 33 33 H 1.08003 * 120.03622 * 179.97438 * 17 7 6 34 34 H 1.08000 * 119.96640 * 180.02562 * 18 17 7 35 35 H 1.09000 * 109.46799 * 306.04449 * 19 2 1 36 36 H 1.08999 * 109.46950 * 186.04956 * 19 2 1 37 37 H 1.09000 * 110.67356 * 308.23090 * 20 19 2 38 38 H 1.08997 * 110.47935 * 37.63988 * 21 20 19 39 39 H 1.09006 * 110.53071 * 274.97280 * 21 20 19 40 40 H 1.09000 * 110.03430 * 217.13677 * 22 21 20 41 41 H 1.09001 * 110.03480 * 95.74888 * 22 21 20 42 42 H 1.09002 * 110.02705 * 119.25730 * 23 22 21 43 43 H 1.09000 * 110.03226 * 240.64118 * 23 22 21 44 44 H 1.09004 * 110.48284 * 142.28579 * 24 23 22 45 45 H 1.08998 * 110.48493 * 264.80014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2985 5 6 2.4981 1.9684 -2.3780 6 6 2.1699 2.5817 -3.5710 7 6 0.9792 3.2877 -3.6826 8 8 0.6567 3.8970 -4.8521 9 6 -0.5624 4.4675 -4.9292 10 1 -1.2004 4.4983 -4.0582 11 6 -0.9974 5.0146 -6.1266 12 7 -0.2203 4.9774 -7.1876 13 14 -2.6868 5.8044 -6.2337 14 1 -2.7668 6.9342 -5.2732 15 1 -2.9108 6.3093 -7.6121 16 1 -3.7262 4.7972 -5.9010 17 6 0.1192 3.3694 -2.5951 18 6 0.4506 2.7494 -1.4065 19 6 1.9954 -0.7659 1.1377 20 6 1.6314 -2.2425 0.9706 21 6 2.4584 -2.8909 -0.1682 22 6 2.4587 -4.3950 0.1747 23 6 2.2069 -4.5017 1.6890 24 6 2.0629 -3.0584 2.2145 25 1 -0.3633 0.4514 0.9232 26 1 -0.3632 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9274 0.8307 29 1 3.0798 1.3443 0.1082 30 1 3.4264 1.4235 -2.2890 31 1 2.8407 2.5163 -4.4149 32 1 -0.5247 5.3598 -8.0254 33 1 -0.8073 3.9181 -2.6787 34 1 -0.2179 2.8123 -0.5606 35 1 1.5610 -0.3870 2.0628 36 1 3.0796 -0.6610 1.1758 37 1 0.5634 -2.3570 0.7850 38 1 3.4759 -2.5000 -0.1708 39 1 1.9806 -2.7197 -1.1329 40 1 3.4243 -4.8348 -0.0751 41 1 1.6646 -4.9029 -0.3726 42 1 1.2901 -5.0606 1.8766 43 1 3.0499 -4.9940 2.1739 44 1 1.2964 -3.0088 2.9880 45 1 3.0160 -2.6957 2.5994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264556660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:45 Heat of formation + Delta-G solvation = -32.504402 kcal Electronic energy + Delta-G solvation = -22472.923091 eV Core-core repulsion = 19261.502207 eV Total energy + Delta-G solvation = -3211.420884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85523 -39.72873 -38.56502 -36.93346 -34.30389 -32.12122 -31.76512 -30.23783 -29.43225 -28.04418 -27.38680 -25.74187 -23.58135 -23.08187 -21.69899 -20.98978 -20.58970 -19.81683 -18.79566 -17.08370 -16.61868 -16.52000 -16.26532 -16.06544 -15.80678 -15.55428 -15.43591 -15.03304 -14.65437 -14.33454 -14.10925 -14.04068 -13.93696 -13.57917 -12.97550 -12.92897 -12.63138 -12.54397 -12.46703 -12.27060 -12.15041 -12.10850 -12.03120 -11.85675 -11.56584 -11.50587 -11.23569 -11.19944 -11.15681 -10.77657 -9.74056 -9.18536 -8.85143 -8.46320 -6.14525 0.62413 0.70307 1.34479 1.45345 1.50928 2.18176 2.76118 3.05614 3.34981 3.54679 3.79391 3.84008 3.91542 4.04166 4.06779 4.23003 4.31587 4.44217 4.47078 4.57494 4.61505 4.64480 4.68286 4.71311 4.81442 4.82237 4.85566 4.90610 4.94102 5.01475 5.11053 5.13723 5.14700 5.16373 5.19796 5.31084 5.33314 5.44282 5.57674 5.60095 5.60629 5.73013 5.83226 6.03798 6.17633 6.22984 6.31714 6.98254 7.80062 8.76900 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.002763 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.382049 B =10130.700749 C =10160.936862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.115 3.885 4 C -0.151 4.151 5 C -0.048 4.048 6 C -0.206 4.206 7 C 0.113 3.887 8 O -0.234 6.234 9 C -0.414 4.414 10 H 0.101 0.899 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.018 2.982 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.258 1.258 17 C -0.243 4.243 18 C -0.061 4.061 19 C 0.066 3.934 20 C -0.087 4.087 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.115 4.115 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.111 0.889 32 H 0.273 0.727 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -14.837 20.527 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.012 4.012 4 C -0.152 4.152 5 C -0.066 4.066 6 C -0.225 4.225 7 C 0.063 3.937 8 O -0.140 6.140 9 C -0.490 4.490 10 H 0.118 0.882 11 C -0.221 4.221 12 N -0.560 5.560 13 Si 0.837 3.163 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.182 1.182 17 C -0.262 4.262 18 C -0.079 4.079 19 C -0.061 4.061 20 C -0.106 4.106 21 C -0.145 4.145 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.153 4.153 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.515 -14.986 19.692 24.995 hybrid contribution -1.029 0.974 -0.114 1.422 sum 2.486 -14.012 19.579 24.204 Atomic orbital electron populations 1.22427 0.87760 1.02082 1.00303 1.61951 1.07994 1.13231 1.43733 1.20817 1.00552 0.87469 0.92330 1.19585 0.95795 1.02919 0.96904 1.20823 0.99395 0.95895 0.90489 1.20459 0.97052 1.04841 1.00192 1.19931 0.94943 0.92118 0.86701 1.83942 1.34987 1.63591 1.31521 1.21770 0.91546 1.36903 0.98759 0.88214 1.26591 1.04252 0.97804 0.93445 1.70179 1.39056 1.44956 1.01828 0.84660 0.74669 0.78601 0.78354 1.18109 1.19594 1.18216 1.21206 1.02069 1.08403 0.94540 1.20897 0.96196 0.95013 0.95811 1.22166 1.00272 0.92975 0.90728 1.22139 0.99693 0.93168 0.95595 1.22247 0.99765 0.94528 0.97948 1.22182 1.01511 0.96486 0.96450 1.22115 1.01807 0.96906 0.95189 1.22367 1.01648 0.94648 0.96679 0.95033 0.92674 0.91052 0.93704 0.89103 0.83839 0.87123 0.91853 0.86543 0.84936 0.94429 0.90183 0.91308 0.91901 0.93183 0.91723 0.92456 0.91838 0.91212 0.91316 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.99 127.69 1.15 1.66 16 2 N -0.55 -12.18 4.68 -927.06 -4.34 -16.51 16 3 C 0.12 2.68 5.12 85.56 0.44 3.12 16 4 C -0.15 -4.74 4.89 -19.83 -0.10 -4.84 16 5 C -0.05 -1.64 9.69 22.25 0.22 -1.43 16 6 C -0.21 -9.03 9.99 22.39 0.22 -8.81 16 7 C 0.11 5.77 6.65 22.58 0.15 5.92 16 8 O -0.23 -14.37 9.76 -22.76 -0.22 -14.59 16 9 C -0.41 -24.51 9.49 67.92 0.64 -23.87 16 10 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 11 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 12 N -0.92 -57.45 13.67 21.61 0.30 -57.16 16 13 Si 1.02 43.38 29.55 68.60 2.03 45.40 16 14 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 17 C -0.24 -10.75 9.17 22.39 0.21 -10.55 16 18 C -0.06 -2.11 7.89 22.25 0.18 -1.93 16 19 C 0.07 1.13 4.40 86.30 0.38 1.51 16 20 C -0.09 -1.42 2.83 -9.48 -0.03 -1.45 16 21 C -0.11 -1.93 6.22 31.70 0.20 -1.73 16 22 C -0.13 -1.95 6.80 31.32 0.21 -1.74 16 23 C -0.12 -1.56 6.80 31.32 0.21 -1.34 16 24 C -0.12 -1.48 6.27 31.67 0.20 -1.28 16 25 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 1.51 5.89 -2.39 -0.01 1.49 16 27 H 0.07 1.50 6.34 -2.39 -0.02 1.48 16 28 H 0.04 0.96 8.06 -2.39 -0.02 0.94 16 29 H 0.09 1.84 7.87 -2.39 -0.02 1.82 16 30 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 34 H 0.13 3.79 7.98 -2.91 -0.02 3.77 16 35 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 36 H 0.08 1.27 7.79 -2.39 -0.02 1.26 16 37 H 0.07 1.24 6.31 -2.39 -0.02 1.22 16 38 H 0.06 1.13 7.95 -2.39 -0.02 1.11 16 39 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.07 0.84 8.05 -2.39 -0.02 0.82 16 Total: -1.00 -69.06 356.31 3.46 -65.60 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.95 Total: 24.91 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 4.74 Total: -47.65 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -4.04 Total: -73.67 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.06 3.46 -65.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264556660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.097 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds