Wall clock time and date at job start Tue Mar 31 2020 06:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35903 * 116.99743 * 2 1 4 4 C 1.38752 * 120.02142 * 0.02562 * 3 2 1 5 5 C 1.38221 * 120.00770 * 179.97438 * 4 3 2 6 6 C 1.38316 * 119.69205 * 359.97438 * 5 4 3 7 7 C 1.37356 * 120.40809 * 0.07461 * 6 5 4 8 8 C 1.38196 * 120.35448 * 359.88175 * 7 6 5 9 9 C 1.51468 * 119.88360 * 179.87302 * 7 6 5 10 10 C 1.53204 * 108.30051 * 69.46568 * 9 7 6 11 11 N 1.45362 * 110.86125 * 275.24888 * 10 9 7 12 12 C 1.46896 * 110.99456 * 198.18638 * 11 10 9 13 13 C 1.53000 * 109.47480 * 294.56844 * 12 11 10 14 14 C 1.53000 * 109.47572 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47388 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99821 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00359 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99893 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46888 * 59.99820 * 19 17 15 21 21 H 1.48497 * 109.47380 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47074 * 300.00335 * 19 17 15 23 23 C 1.45377 * 116.67213 * 69.70137 * 11 10 9 24 24 C 1.51493 * 119.75660 * 180.02562 * 6 5 4 25 25 H 1.08995 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46873 * 299.99971 * 1 2 3 27 27 H 1.08997 * 109.47344 * 59.99721 * 1 2 3 28 28 H 1.07995 * 119.99592 * 359.97220 * 4 3 2 29 29 H 1.08005 * 120.15268 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.20987 * 180.10750 * 8 7 6 31 31 H 1.08995 * 109.70138 * 189.17018 * 9 7 6 32 32 H 1.08999 * 109.70185 * 309.76759 * 9 7 6 33 33 H 1.08997 * 109.19862 * 35.58622 * 10 9 7 34 34 H 1.08997 * 109.20047 * 154.92275 * 10 9 7 35 35 H 1.09005 * 109.47074 * 54.56924 * 12 11 10 36 36 H 1.08995 * 109.47145 * 174.57087 * 12 11 10 37 37 H 1.09005 * 109.47032 * 300.00105 * 13 12 11 38 38 H 1.09006 * 109.47151 * 59.99806 * 13 12 11 39 39 H 1.09005 * 109.47035 * 300.00113 * 14 13 12 40 40 H 1.08997 * 109.46911 * 59.99703 * 14 13 12 41 41 H 0.97002 * 120.00285 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.19811 * 169.90370 * 23 11 10 43 43 H 1.08998 * 109.20095 * 50.57279 * 23 11 10 44 44 H 1.09001 * 109.69773 * 350.94308 * 24 6 5 45 45 H 1.09001 * 109.73104 * 230.36481 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3749 0.0005 5 6 1.9184 3.6063 0.0011 6 6 3.3001 3.6710 0.0016 7 6 4.0500 2.5202 0.0001 8 6 3.4321 1.2840 0.0004 9 6 5.5623 2.6049 -0.0022 10 6 6.0162 3.1407 1.3594 11 7 5.9795 4.5937 1.3822 12 6 6.7962 5.1236 2.4822 13 6 6.1802 4.7096 3.8202 14 6 7.0312 5.2609 4.9659 15 6 6.4248 4.8527 6.2837 16 1 5.5224 4.2596 6.3022 17 6 7.0221 5.2362 7.4657 18 7 8.1212 5.9579 7.4432 19 14 6.2700 4.7307 9.0992 20 1 6.2232 3.2490 9.1851 21 1 7.0960 5.2657 10.2112 22 1 4.8924 5.2761 9.1998 23 6 4.6646 5.2136 1.3642 24 6 3.9896 5.0199 0.0028 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2122 2.3186 0.0005 29 1 1.3328 4.5138 0.0011 30 1 4.0240 0.3807 0.0010 31 1 5.9855 1.6140 -0.1668 32 1 5.8912 3.2811 -0.7913 33 1 5.3557 2.7535 2.1352 34 1 7.0345 2.8052 1.5553 35 1 7.8077 4.7240 2.4088 36 1 6.8296 6.2112 2.4187 37 1 5.1687 5.1092 3.8936 38 1 6.1467 3.6219 3.8838 39 1 8.0426 4.8610 4.8923 40 1 7.0651 6.3485 4.9025 41 1 8.5412 6.2281 8.2748 42 1 4.7684 6.2801 1.5643 43 1 4.0448 4.7624 2.1390 44 1 3.2546 5.8084 -0.1585 45 1 4.7402 5.0502 -0.7871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374323942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:33 Heat of formation + Delta-G solvation = -27.933048 kcal Electronic energy + Delta-G solvation = -22878.319718 eV Core-core repulsion = 19667.097063 eV Total energy + Delta-G solvation = -3211.222655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55725 -38.97297 -37.10953 -33.92666 -33.09241 -32.49349 -30.64837 -29.98342 -27.67683 -27.20595 -25.43837 -24.00946 -23.08032 -22.41150 -20.96878 -20.25126 -19.42875 -17.83848 -16.67570 -16.25787 -15.91633 -15.63886 -15.17054 -15.02937 -14.80047 -14.40422 -14.05696 -13.79992 -13.49829 -13.32541 -13.06407 -12.78944 -12.37603 -12.27653 -11.92066 -11.76843 -11.66021 -11.39401 -11.30438 -11.00468 -10.94078 -10.76713 -10.69394 -10.68716 -10.49193 -10.46814 -9.60895 -9.41846 -9.15523 -8.85778 -8.33232 -8.12023 -7.70416 -5.98211 -4.00711 1.25913 1.37301 3.10423 3.33710 3.37868 3.40726 3.65777 4.17881 4.47200 4.62056 4.65665 4.80319 4.86968 4.89697 5.11966 5.16066 5.20733 5.24290 5.37017 5.37835 5.41858 5.56693 5.57536 5.59663 5.74494 5.82705 5.95079 6.00616 6.03986 6.05070 6.16358 6.25957 6.26680 6.32723 6.41611 6.64298 6.67599 6.72761 6.82828 7.09075 7.27116 7.51297 7.62719 7.68537 7.84500 8.01600 8.45402 9.06110 9.63250 11.12793 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.003426 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.470021 B = 8169.948082 C = 9094.485032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.038 4.038 8 C -0.148 4.148 9 C -0.080 4.080 10 C 0.077 3.923 11 N -0.567 5.567 12 C 0.063 3.937 13 C -0.143 4.143 14 C 0.025 3.975 15 C -0.521 4.521 16 H 0.052 0.948 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.076 3.924 24 C -0.075 4.075 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 -7.210 -19.292 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.231 4.231 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.039 4.039 8 C -0.167 4.167 9 C -0.117 4.117 10 C -0.051 4.051 11 N -0.291 5.291 12 C -0.064 4.064 13 C -0.182 4.182 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.052 4.052 24 C -0.112 4.112 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.122 -7.200 -19.577 24.126 hybrid contribution -1.201 -0.433 1.840 2.240 sum -13.323 -7.633 -17.737 23.460 Atomic orbital electron populations 1.23020 0.78645 1.03723 1.01269 1.86059 1.21185 1.27162 1.88967 1.19016 0.92296 0.84012 0.97233 1.21175 0.99730 0.92434 1.09793 1.20880 0.93875 0.96901 0.97898 1.19727 0.93196 0.95492 1.02938 1.19593 0.96220 0.91533 0.96508 1.20352 0.91193 0.98058 1.07079 1.20970 0.89941 1.01812 0.99014 1.21579 1.01112 0.87282 0.95134 1.59325 1.15158 1.07269 1.47338 1.22280 0.96280 0.99700 0.88145 1.22220 1.00028 1.00105 0.95859 1.19012 0.94730 0.96098 0.91395 1.21229 1.10261 1.33151 0.91270 0.93015 1.25013 0.94988 0.95209 0.99181 1.69948 1.19062 1.37300 1.27209 0.86685 0.79184 0.78903 0.83398 1.20269 1.21232 1.20293 1.21606 0.88962 0.99228 0.95403 1.20874 0.98963 0.92728 0.98677 0.88409 0.92696 0.92820 0.85816 0.85795 0.85265 0.90619 0.89422 0.94617 0.90425 0.91185 0.91202 0.93580 0.93545 0.96638 0.96659 0.92962 0.90628 0.94708 0.90975 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.70 10.50 -19.44 -0.20 -3.91 16 3 C 0.12 1.48 6.69 -39.18 -0.26 1.21 16 4 C -0.21 -2.38 9.04 -39.40 -0.36 -2.74 16 5 C -0.08 -0.88 9.69 -39.56 -0.38 -1.26 16 6 C -0.11 -1.39 5.01 -104.52 -0.52 -1.92 16 7 C -0.04 -0.48 5.00 -104.58 -0.52 -1.01 16 8 C -0.15 -1.87 9.63 -39.39 -0.38 -2.25 16 9 C -0.08 -0.93 5.52 -27.40 -0.15 -1.08 16 10 C 0.08 1.08 4.56 -4.55 -0.02 1.06 16 11 N -0.57 -8.36 4.26 -236.95 -1.01 -9.37 16 12 C 0.06 1.08 5.18 -3.83 -0.02 1.06 16 13 C -0.14 -2.99 4.69 -26.73 -0.13 -3.12 16 14 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.08 1.06 4.58 -4.55 -0.02 1.04 16 24 C -0.07 -0.86 5.52 -27.40 -0.15 -1.01 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.38 7.66 -51.92 -0.40 -0.02 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 28 H 0.12 1.10 6.29 -52.49 -0.33 0.77 16 29 H 0.12 1.15 7.98 -52.48 -0.42 0.73 16 30 H 0.13 1.48 7.98 -52.49 -0.42 1.06 16 31 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 32 H 0.09 0.99 7.23 -51.93 -0.38 0.62 16 33 H 0.04 0.57 7.09 -51.93 -0.37 0.20 16 34 H 0.08 1.06 7.78 -51.93 -0.40 0.66 16 35 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 36 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 37 H 0.05 0.98 6.97 -51.93 -0.36 0.61 16 38 H 0.05 0.99 6.95 -51.93 -0.36 0.63 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.03 7.77 -51.93 -0.40 0.63 16 43 H 0.03 0.55 7.10 -51.93 -0.37 0.18 16 44 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 45 H 0.08 0.94 7.23 -51.93 -0.38 0.57 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -31.72 351.21 -10.12 -41.83 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.44 Total: -2.21 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.48 Total: -22.13 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.27 Total: -35.91 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.20 Total: -3.91 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.72 -10.12 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374323942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.900 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds