Wall clock time and date at job start Tue Mar 31 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35903 * 116.99743 * 2 1 4 4 C 1.38752 * 120.02142 * 0.02562 * 3 2 1 5 5 C 1.38221 * 120.00770 * 179.97438 * 4 3 2 6 6 C 1.38316 * 119.69205 * 359.97438 * 5 4 3 7 7 C 1.37356 * 120.40809 * 0.07461 * 6 5 4 8 8 C 1.38196 * 120.35448 * 359.88175 * 7 6 5 9 9 C 1.51468 * 119.88360 * 179.87302 * 7 6 5 10 10 C 1.53204 * 108.30051 * 69.46568 * 9 7 6 11 11 N 1.45362 * 110.86125 * 275.24888 * 10 9 7 12 12 C 1.46896 * 110.99456 * 198.18638 * 11 10 9 13 13 C 1.53000 * 109.47480 * 294.56844 * 12 11 10 14 14 C 1.53000 * 109.47572 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47388 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99821 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00359 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99893 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46888 * 59.99820 * 19 17 15 21 21 H 1.48497 * 109.47380 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47074 * 300.00335 * 19 17 15 23 23 C 1.45377 * 116.67213 * 69.70137 * 11 10 9 24 24 C 1.51493 * 119.75660 * 180.02562 * 6 5 4 25 25 H 1.08995 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46873 * 299.99971 * 1 2 3 27 27 H 1.08997 * 109.47344 * 59.99721 * 1 2 3 28 28 H 1.07995 * 119.99592 * 359.97220 * 4 3 2 29 29 H 1.08005 * 120.15268 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.20987 * 180.10750 * 8 7 6 31 31 H 1.08995 * 109.70138 * 189.17018 * 9 7 6 32 32 H 1.08999 * 109.70185 * 309.76759 * 9 7 6 33 33 H 1.08997 * 109.19862 * 35.58622 * 10 9 7 34 34 H 1.08997 * 109.20047 * 154.92275 * 10 9 7 35 35 H 1.09005 * 109.47074 * 54.56924 * 12 11 10 36 36 H 1.08995 * 109.47145 * 174.57087 * 12 11 10 37 37 H 1.09005 * 109.47032 * 300.00105 * 13 12 11 38 38 H 1.09006 * 109.47151 * 59.99806 * 13 12 11 39 39 H 1.09005 * 109.47035 * 300.00113 * 14 13 12 40 40 H 1.08997 * 109.46911 * 59.99703 * 14 13 12 41 41 H 0.97002 * 120.00285 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.19811 * 169.90370 * 23 11 10 43 43 H 1.08998 * 109.20095 * 50.57279 * 23 11 10 44 44 H 1.09001 * 109.69773 * 350.94308 * 24 6 5 45 45 H 1.09001 * 109.73104 * 230.36481 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3749 0.0005 5 6 1.9184 3.6063 0.0011 6 6 3.3001 3.6710 0.0016 7 6 4.0500 2.5202 0.0001 8 6 3.4321 1.2840 0.0004 9 6 5.5623 2.6049 -0.0022 10 6 6.0162 3.1407 1.3594 11 7 5.9795 4.5937 1.3822 12 6 6.7962 5.1236 2.4822 13 6 6.1802 4.7096 3.8202 14 6 7.0312 5.2609 4.9659 15 6 6.4248 4.8527 6.2837 16 1 5.5224 4.2596 6.3022 17 6 7.0221 5.2362 7.4657 18 7 8.1212 5.9579 7.4432 19 14 6.2700 4.7307 9.0992 20 1 6.2232 3.2490 9.1851 21 1 7.0960 5.2657 10.2112 22 1 4.8924 5.2761 9.1998 23 6 4.6646 5.2136 1.3642 24 6 3.9896 5.0199 0.0028 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2122 2.3186 0.0005 29 1 1.3328 4.5138 0.0011 30 1 4.0240 0.3807 0.0010 31 1 5.9855 1.6140 -0.1668 32 1 5.8912 3.2811 -0.7913 33 1 5.3557 2.7535 2.1352 34 1 7.0345 2.8052 1.5553 35 1 7.8077 4.7240 2.4088 36 1 6.8296 6.2112 2.4187 37 1 5.1687 5.1092 3.8936 38 1 6.1467 3.6219 3.8838 39 1 8.0426 4.8610 4.8923 40 1 7.0651 6.3485 4.9025 41 1 8.5412 6.2281 8.2748 42 1 4.7684 6.2801 1.5643 43 1 4.0448 4.7624 2.1390 44 1 3.2546 5.8084 -0.1585 45 1 4.7402 5.0502 -0.7871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374323942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:32 Heat of formation + Delta-G solvation = -45.905452 kcal Electronic energy + Delta-G solvation = -22879.099060 eV Core-core repulsion = 19667.097063 eV Total energy + Delta-G solvation = -3212.001997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45043 -39.96400 -38.20240 -35.75715 -34.15926 -33.92827 -32.24152 -30.89396 -28.95485 -28.06713 -27.01562 -24.99959 -24.58139 -23.45986 -22.63240 -21.13021 -20.78820 -18.68095 -18.53526 -17.47487 -16.68441 -16.62382 -16.57749 -16.42938 -16.07890 -15.72038 -15.38208 -14.96019 -14.64298 -14.39615 -14.16769 -13.99054 -13.82438 -13.54288 -13.15899 -13.01834 -12.77585 -12.73927 -12.57488 -12.50183 -12.46681 -12.22768 -12.04397 -11.77302 -11.61146 -11.58436 -11.36956 -11.30678 -11.29088 -10.57576 -9.75878 -9.09870 -8.94834 -8.21817 -6.34137 0.37284 0.47242 1.36280 1.39125 1.47415 2.37690 2.38000 2.75986 2.97776 3.09731 3.70954 3.82149 3.95233 4.11966 4.17863 4.21590 4.24934 4.37045 4.37196 4.43155 4.45238 4.49132 4.57051 4.57194 4.66864 4.69658 4.72682 4.80599 4.92114 4.97794 5.00844 5.09318 5.15342 5.21204 5.23455 5.29285 5.36981 5.46954 5.47628 5.70185 5.77517 5.82424 5.85738 6.15834 6.26372 6.44240 6.46481 6.81903 7.34969 8.88656 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.003426 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.470021 B = 8169.948082 C = 9094.485032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.107 3.893 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.129 4.129 7 C -0.051 4.051 8 C -0.166 4.166 9 C -0.070 4.070 10 C 0.077 3.923 11 N -0.557 5.557 12 C 0.073 3.927 13 C -0.125 4.125 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.268 1.268 23 C 0.075 3.925 24 C -0.064 4.064 25 H 0.118 0.882 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.012 0.988 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.039 0.961 39 H -0.006 1.006 40 H -0.006 1.006 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.012 0.988 44 H 0.094 0.906 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.116 -7.539 -19.931 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.062 3.938 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.129 4.129 7 C -0.051 4.051 8 C -0.185 4.185 9 C -0.107 4.107 10 C -0.051 4.051 11 N -0.280 5.280 12 C -0.055 4.055 13 C -0.164 4.164 14 C -0.008 4.008 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.193 1.193 23 C -0.053 4.053 24 C -0.102 4.102 25 H 0.136 0.864 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.150 0.850 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.030 0.970 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.012 0.988 40 H 0.013 0.987 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.741 -7.538 -20.238 25.597 hybrid contribution -0.750 -0.364 2.034 2.198 sum -14.491 -7.902 -18.204 24.573 Atomic orbital electron populations 1.23309 0.76619 1.05438 1.02108 1.86034 1.23368 1.27004 1.88890 1.19222 0.92514 0.84793 0.97245 1.21463 1.00945 0.91992 1.08992 1.21198 0.93774 0.97910 0.97068 1.19925 0.93882 0.95645 1.03470 1.19731 0.96595 0.91819 0.96952 1.20532 0.91846 0.98337 1.07764 1.20899 0.89728 1.02686 0.97436 1.21626 1.00757 0.86640 0.96066 1.59431 1.15541 1.07755 1.45273 1.22109 0.96529 0.99983 0.86847 1.21998 0.98945 0.99232 0.96212 1.18904 0.94377 0.94726 0.92754 1.21651 1.10577 1.33532 0.92857 0.93096 1.25940 0.95360 0.94970 1.03280 1.70070 1.20318 1.38131 1.28484 0.85555 0.78591 0.78855 0.78393 1.19377 1.20360 1.19297 1.21687 0.88102 0.99022 0.96503 1.20809 0.99314 0.93146 0.96899 0.86419 0.92225 0.91507 0.83578 0.83611 0.84951 0.89039 0.88665 0.97014 0.90243 0.90985 0.90869 0.94081 0.94205 0.98800 0.98729 0.92627 0.90324 0.96973 0.88787 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.51 10.50 -92.46 -0.97 -8.48 16 3 C 0.11 2.56 6.69 22.53 0.15 2.71 16 4 C -0.22 -4.45 9.04 22.39 0.20 -4.25 16 5 C -0.08 -1.70 9.69 22.28 0.22 -1.48 16 6 C -0.13 -3.00 5.01 -19.80 -0.10 -3.10 16 7 C -0.05 -1.24 5.00 -19.84 -0.10 -1.34 16 8 C -0.17 -4.12 9.63 22.40 0.22 -3.91 16 9 C -0.07 -1.56 5.52 30.16 0.17 -1.40 16 10 C 0.08 2.14 4.56 86.66 0.40 2.53 16 11 N -0.56 -16.11 4.26 -903.56 -3.85 -19.97 16 12 C 0.07 2.51 5.18 86.30 0.45 2.95 16 13 C -0.12 -5.33 4.69 30.59 0.14 -5.19 16 14 C 0.03 1.63 4.97 29.85 0.15 1.77 16 15 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -57.35 13.29 21.44 0.28 -57.07 16 19 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.07 2.02 4.58 86.65 0.40 2.41 16 24 C -0.06 -1.36 5.52 30.16 0.17 -1.19 16 25 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 0.71 7.66 -2.38 -0.02 0.69 16 27 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 28 H 0.15 2.23 6.29 -2.91 -0.02 2.21 16 29 H 0.15 2.29 7.98 -2.91 -0.02 2.27 16 30 H 0.13 3.02 7.98 -2.91 -0.02 3.00 16 31 H 0.09 1.73 7.92 -2.39 -0.02 1.71 16 32 H 0.10 1.99 7.23 -2.39 -0.02 1.97 16 33 H 0.01 0.38 7.09 -2.39 -0.02 0.36 16 34 H 0.08 2.15 7.78 -2.39 -0.02 2.13 16 35 H 0.07 2.45 7.92 -2.38 -0.02 2.44 16 36 H 0.07 2.48 7.91 -2.39 -0.02 2.46 16 37 H 0.04 1.77 6.97 -2.38 -0.02 1.76 16 38 H 0.04 1.73 6.95 -2.38 -0.02 1.72 16 39 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 42 H 0.08 2.06 7.77 -2.39 -0.02 2.04 16 43 H 0.01 0.38 7.10 -2.39 -0.02 0.36 16 44 H 0.09 1.57 7.92 -2.39 -0.02 1.56 16 45 H 0.09 1.80 7.23 -2.39 -0.02 1.78 16 Total: -1.00 -68.58 351.21 2.70 -65.88 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.95 Total: 11.99 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 4.26 Total: -39.60 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -3.57 Total: -77.03 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.97 Total: -8.48 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.58 2.70 -65.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374323942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.976 kcal (2) G-P(sol) polarization free energy of solvation -68.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds