Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47252 * 2 1 4 4 H 1.09004 * 109.46934 * 304.99404 * 3 2 1 5 5 C 1.52998 * 109.47206 * 64.99512 * 3 2 1 6 6 C 1.50696 * 109.47301 * 184.99851 * 3 2 1 7 7 C 1.38284 * 119.93035 * 119.99432 * 6 3 2 8 8 C 1.38105 * 120.07189 * 179.97438 * 7 6 3 9 9 C 1.38884 * 119.92810 * 0.02813 * 8 7 6 10 10 N 1.39881 * 120.06867 * 179.97438 * 9 8 7 11 11 C 1.37663 * 119.99517 * 146.82878 * 10 9 8 12 12 N 1.30337 * 119.99993 * 354.44474 * 11 10 9 13 13 N 1.37503 * 119.99594 * 174.43954 * 11 10 9 14 14 C 1.46498 * 119.99651 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47087 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47531 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99333 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00474 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99503 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46965 * 60.00074 * 20 18 16 22 22 H 1.48499 * 109.46744 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47139 * 299.99910 * 20 18 16 24 24 C 1.38877 * 119.85750 * 0.24841 * 9 8 7 25 25 C 1.38108 * 119.92914 * 359.47525 * 24 9 8 26 26 H 1.09006 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47540 * 300.00643 * 1 2 3 28 28 H 1.09007 * 109.46995 * 60.00622 * 1 2 3 29 29 H 1.09001 * 109.47540 * 239.99357 * 2 1 3 30 30 H 1.09007 * 109.46995 * 119.99378 * 2 1 3 31 31 H 1.08998 * 109.46835 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46791 * 299.99936 * 5 3 2 33 33 H 1.08997 * 109.47103 * 60.00438 * 5 3 2 34 34 H 1.07996 * 119.96319 * 359.97438 * 7 6 3 35 35 H 1.08008 * 120.03633 * 180.02562 * 8 7 6 36 36 H 0.96996 * 120.00222 * 327.10749 * 10 9 8 37 37 H 0.96992 * 119.99577 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00148 * 0.02562 * 13 11 10 39 39 H 1.08997 * 109.47489 * 300.00575 * 14 13 11 40 40 H 1.09002 * 109.47146 * 60.00336 * 14 13 11 41 41 H 1.09000 * 109.47510 * 300.00123 * 15 14 13 42 42 H 1.09002 * 109.47203 * 59.99943 * 15 14 13 43 43 H 0.97004 * 119.99643 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.03785 * 179.75139 * 24 9 8 45 45 H 1.07995 * 119.96769 * 180.30063 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 6 4.1450 2.0742 -1.1970 8 6 5.5211 2.0781 -1.3131 9 6 6.2994 1.4480 -0.3507 10 7 7.6935 1.4497 -0.4657 11 6 8.4773 1.4820 0.6656 12 7 7.9244 1.6201 1.8378 13 7 9.8435 1.3683 0.5589 14 6 10.6776 1.4032 1.7627 15 6 12.1487 1.2586 1.3681 16 6 13.0068 1.2938 2.6065 17 1 12.5487 1.4084 3.5777 18 6 14.3767 1.1798 2.4996 19 7 14.9345 1.0408 1.3167 20 14 15.4403 1.2242 4.0345 21 1 15.0566 0.1075 4.9351 22 1 16.8682 1.0837 3.6515 23 1 15.2418 2.5173 4.7371 24 6 5.6904 0.8114 0.7228 25 6 4.3140 0.8160 0.8361 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.9982 3.1544 1.3070 32 1 0.5488 2.1253 1.3967 33 1 2.0698 1.5877 2.1491 34 1 3.5391 2.5635 -1.9453 35 1 5.9916 2.5705 -2.1514 36 1 8.1079 1.4322 -1.3425 37 1 8.4766 1.6424 2.6348 38 1 10.2549 1.2659 -0.3135 39 1 10.5317 2.3523 2.2785 40 1 10.3960 0.5835 2.4237 41 1 12.2950 0.3096 0.8522 42 1 12.4300 2.0785 0.7073 43 1 15.8983 0.9602 1.2415 44 1 6.2927 0.3172 1.4707 45 1 3.8400 0.3254 1.6733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849017607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = 31.671647 kcal Electronic energy + Delta-G solvation = -21739.647267 eV Core-core repulsion = 18563.302016 eV Total energy + Delta-G solvation = -3176.345251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92990 -38.28287 -36.38066 -34.51746 -33.03662 -31.41968 -30.70033 -30.34393 -29.19908 -27.96154 -25.09470 -24.40162 -22.91646 -22.27668 -21.07207 -19.94857 -19.88177 -18.05208 -17.03049 -16.34529 -15.83166 -15.46834 -14.99897 -14.70313 -14.57997 -14.29004 -14.15269 -13.93787 -13.56181 -13.29060 -13.26203 -12.69780 -12.67267 -12.31577 -12.18868 -11.98507 -11.81532 -11.29308 -11.28202 -11.06154 -10.93586 -10.75392 -10.70991 -10.57513 -10.39218 -9.71540 -9.44512 -9.43473 -9.05868 -8.67858 -8.50116 -7.87873 -7.46015 -6.15299 -4.19085 1.46659 1.59945 2.95316 3.26708 3.31151 3.31806 3.33948 3.99465 4.26876 4.43098 4.55678 4.65868 4.86357 5.03835 5.11782 5.21695 5.22706 5.25254 5.34204 5.42570 5.50761 5.58414 5.67448 5.72935 5.78180 5.83130 5.88728 5.99891 6.12559 6.14370 6.15402 6.15629 6.32046 6.50134 6.55262 6.59229 6.76440 6.87978 7.13820 7.24520 7.45757 7.52928 7.64970 7.82342 8.15258 8.35512 8.86209 9.05175 9.46094 10.96111 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041653 B = 0.002230 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.059992 B =12552.345783 C =12915.721100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.046 4.046 4 H 0.072 0.928 5 C -0.145 4.145 6 C -0.108 4.108 7 C -0.100 4.100 8 C -0.160 4.160 9 C 0.187 3.813 10 N -0.671 5.671 11 C 0.625 3.375 12 N -0.822 5.822 13 N -0.764 5.764 14 C 0.133 3.867 15 C 0.017 3.983 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.107 4.107 25 C -0.097 4.097 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.409 0.591 37 H 0.342 0.658 38 H 0.389 0.611 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.143 0.857 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.125 -0.295 -6.322 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.065 4.065 4 H 0.091 0.909 5 C -0.203 4.203 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.182 4.182 9 C 0.091 3.909 10 N -0.304 5.304 11 C 0.258 3.742 12 N -0.471 5.471 13 N -0.408 5.408 14 C 0.010 3.990 15 C -0.021 4.021 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.128 4.128 25 C -0.116 4.116 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.245 0.755 37 H 0.160 0.840 38 H 0.222 0.778 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.160 0.840 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.873 -0.207 -5.834 26.523 hybrid contribution 2.249 0.020 0.171 2.256 sum -23.624 -0.187 -5.664 24.294 Atomic orbital electron populations 1.21840 0.96028 1.01457 1.01794 1.21594 0.95417 0.96055 1.02324 1.20083 0.91368 0.96345 0.98687 0.90931 1.21898 1.00788 1.00678 0.96891 1.19699 0.94857 1.00635 0.95763 1.20665 0.93641 0.99833 0.97736 1.20771 0.93931 1.02423 1.01049 1.17467 0.81384 0.95815 0.96258 1.41334 1.03279 1.79793 1.05959 1.18794 0.79412 0.88151 0.87888 1.69675 1.39685 1.39640 0.98062 1.45852 1.03305 1.80511 1.11107 1.21616 0.92782 0.99627 0.84997 1.19250 0.87164 0.97850 0.97799 1.20982 0.91433 1.51150 0.92786 0.92330 1.25003 0.98129 0.94884 0.96257 1.69946 1.11085 1.49344 1.22736 0.86552 0.79154 0.78767 0.82948 1.20077 1.21195 1.20091 1.21255 0.94174 0.98769 0.98570 1.20801 0.93079 0.99430 0.98272 0.92927 0.92493 0.92892 0.91940 0.91787 0.92628 0.92545 0.92420 0.86484 0.86367 0.75480 0.83993 0.77826 0.93203 0.93164 0.95901 0.95922 0.92719 0.83986 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.89 5.14 -26.73 -0.14 -1.03 16 3 C -0.05 -0.39 2.56 -91.77 -0.23 -0.62 16 4 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 5 C -0.15 -1.18 8.76 37.16 0.33 -0.85 16 6 C -0.11 -1.16 4.78 -104.59 -0.50 -1.66 16 7 C -0.10 -1.06 9.66 -39.61 -0.38 -1.45 16 8 C -0.16 -1.85 9.96 -39.39 -0.39 -2.24 16 9 C 0.19 2.53 6.28 -83.71 -0.53 2.01 16 10 N -0.67 -8.98 5.46 -11.15 -0.06 -9.04 16 11 C 0.62 10.18 8.45 -319.81 -2.70 7.47 16 12 N -0.82 -14.46 10.77 30.19 0.33 -14.14 16 13 N -0.76 -12.82 5.67 -61.74 -0.35 -13.17 16 14 C 0.13 2.64 4.96 -4.04 -0.02 2.62 16 15 C 0.02 0.41 5.09 -27.88 -0.14 0.27 16 16 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.11 -1.50 8.58 -39.39 -0.34 -1.84 16 25 C -0.10 -1.16 8.75 -39.61 -0.35 -1.51 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 28 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 7.56 -51.92 -0.39 0.11 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 34 H 0.12 0.99 7.94 -52.49 -0.42 0.58 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.41 4.33 8.92 -40.82 -0.36 3.97 16 37 H 0.34 6.16 7.14 -40.82 -0.29 5.87 16 38 H 0.39 5.93 8.58 -40.82 -0.35 5.58 16 39 H 0.05 1.01 7.97 -51.93 -0.41 0.60 16 40 H 0.05 1.01 7.97 -51.93 -0.41 0.60 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.14 2.23 6.30 -52.49 -0.33 1.90 16 45 H 0.12 1.24 7.15 -52.49 -0.38 0.87 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -29.50 364.15 -11.66 -41.16 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.32 Total: 11.15 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -5.45 Total: -12.42 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.65 Total: -61.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.50 -11.66 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849017607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.829 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds